NO22G00020.1, NO22G00020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00020.1
Unique NameNO22G00020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length606
Alignment locationchr22:4963..5881 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:4963..5881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00020.1 vs.
Match: XP_005852806.1 (hypothetical protein NGA_0391902 [Nannochloropsis gaditana CCMP526]; XP_005855006.1 hypothetical protein NGA_0391901 [Nannochloropsis gaditana CCMP526]; EKU21360.1 hypothetical protein NGA_0391901 [Nannochloropsis gaditana CCMP526]; EKU23027.1 hypothetical protein NGA_0391902 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 163.7 bits (413), Expect = 4.500e-37
Identity = 77/101 (76.24%), Postives = 89/101 (88.12%), Query Frame = 0 
Query:   51 MSSTVAVTPTTLWMLQYHYVPDILEKRTPHRAGHLAGLNQAAADGTMVLGGALADPVDMGILVFTDKAVAEAFPAEDPYVKAGLVREWKVRPWTVVAGSKL 152
            MSS  A+TPTTLW+LQYHYV DIL++R PHRA HLAGL QAA +G++VLGGALADPVDMG+LVFTDK+VAE F A D YVKAGLV+EW+VR WTVVAGSK+
Sbjct:    9 MSSAQAITPTTLWLLQYHYVNDILDRRGPHRAEHLAGLTQAAKEGSLVLGGALADPVDMGVLVFTDKSVAENFAAADAYVKAGLVKEWQVRQWTVVAGSKI 109
The following BLAST results are available for this feature:
BLAST of NO22G00020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852806.14.500e-3776.24hypothetical protein NGA_0391902 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00020NO22G00020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00020.1NO22G00020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00020.1.cds1NO22G00020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00020.1.cds2NO22G00020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00020.1.cds3NO22G00020.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00020.1 ID=NO22G00020.1|Name=NO22G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=606bp
ACAGTTCACCTGCATGCTACGTTTTGCACCCGTCGCTGTACTCGCTGCAC
GGACCGCTTTTTCGTGCTGCGCGCATTCGGTTGCTGTTGCGAGAGACTTT
GCTGCTTCCTCGCCCTTCAAGTTCTCTTCTCTTCTGTTCCTAAGAGTCGT
GCCCAGGCGAGCCATGTCGTCCACCGTCGCCGTCACTCCCACCACCCTGT
GGATGCTGCAATATCACTATGTCCCTGATATCCTGGAGAAGCGCACACCT
CACCGCGCAGGGCATCTGGCGGGCTTGAATCAGGCAGCGGCCGACGGGAC
GATGGTCTTAGGCGGAGCCCTGGCCGACCCCGTGGACATGGGCATCTTGG
TGTTCACTGACAAGGCCGTAGCCGAGGCCTTCCCGGCTGAGGATCCATAT
GTAAAGGCGGGATTAGTCAGGGAATGGAAAGTCCGGCCGTGGACCGTGGT
GGCGGGTAGCAAGTTGTGAGGGAGGGAAGGAGGGAGGTGGGGAAGGGTGG
GATAGTCGTCAGGGGCCGGGTATGGATGGGAAAGGGCGGGAGACCAGAGA
TAGAAAGAGAGGTGTCTGCGAACGACAAGGAAAGGAAATAAATGACTAAA
GCGTGT
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protein sequence of NO22G00020.1

>NO22G00020.1-protein ID=NO22G00020.1-protein|Name=NO22G00020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MLRFAPVAVLAARTAFSCCAHSVAVARDFAASSPFKFSSLLFLRVVPRRA
MSSTVAVTPTTLWMLQYHYVPDILEKRTPHRAGHLAGLNQAAADGTMVLG
GALADPVDMGILVFTDKAVAEAFPAEDPYVKAGLVREWKVRPWTVVAGSK
L*
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mRNA from alignment at chr22:4963..5881-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00020.1 ID=NO22G00020.1|Name=NO22G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=919bp|location=Sequence derived from alignment at chr22:4963..5881- (Nannochloropsis oceanica)
ACAGTTCACCTGCATGCTACGTTTTGCACCCGTCGCTGTACTCGCTGCAC
GGACCGCTTTTTCGTGCTGCGCGCATTCGGTTGCTGTTGCGAGAGACTTT
GCTGCTTCCTCGCCCTTCAAGTTCTCTTCTCTTCTGTTCCTAAGAGTCGT
GCCCAGGCGAGGTAAGTACGCTTTCTAGCTGTGTAATGTATGTTTGACAA
TGCTATGTGTGGTGGATAAACAGAATGAAAATAGCATGAACATTCATACA
GATTCAAGGAAATAAATCTCGTCTTTATCAACCTCCCCCTCACTCACCAT
ATCATTCCCGAACCAAGCCATGTCGTCCACCGTCGCCGTCACTCCCACCA
CCCTGTGGATGCTGCAATATCACTATGTCCCTGATATCCTGGAGAAGCGC
ACACCTCACCGCGCAGGGCATCTGGCGGGCTTGAATCAGGCAGCGGCCGA
CGGGACGATGGTCTTAGGTATGACTTGGAGGGGGATTTCGCGCCGCAAAA
GGAGGGAGGAGAAAGAAAGAGATGCAATTAAATAACAGCGAGCTTCTCTC
TTTTCCCCCATCCATCCGCTTCTTCGTTTTCACATACTCACCTAATTCTT
CTTTCTTTTCCCTTCCCCGTGTAGGCGGAGCCCTGGCCGACCCCGTGGAC
ATGGGCATCTTGGTGTTCACTGACAAGGCCGTAGCCGAGGCCTTCCCGGC
TGAGGATCCATATGTAAAGGCGGGATTAGTCAGGGAATGGAAAGTCCGGC
CGTGGACCGTGGTGGCGGGTAGCAAGTTGTGAGGGAGGGAAGGAGGGAGG
TGGGGAAGGGTGGGATAGTCGTCAGGGGCCGGGTATGGATGGGAAAGGGC
GGGAGACCAGAGATAGAAAGAGAGGTGTCTGCGAACGACAAGGAAAGGAA
ATAAATGACTAAAGCGTGT
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Coding sequence (CDS) from alignment at chr22:4963..5881-

>NO22G00020.1 ID=NO22G00020.1|Name=NO22G00020.1|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at chr22:4963..5881- (Nannochloropsis oceanica)
ATGCTACGTTTTGCACCCGTCGCTGTACTCGCTGCACGGACCGCTTTTTC
GTGCTGCGCGCATTCGGTTGCTGTTGCGAGAGACTTTGCTGCTTCCTCGC
CCTTCAAGTTCTCTTCTCTTCTGTTCCTAAGAGTCGTGCCCAGGCGAGCC
ATGTCGTCCACCGTCGCCGTCACTCCCACCACCCTGTGGATGCTGCAATA
TCACTATGTCCCTGATATCCTGGAGAAGCGCACACCTCACCGCGCAGGGC
ATCTGGCGGGCTTGAATCAGGCAGCGGCCGACGGGACGATGGTCTTAGGC
GGAGCCCTGGCCGACCCCGTGGACATGGGCATCTTGGTGTTCACTGACAA
GGCCGTAGCCGAGGCCTTCCCGGCTGAGGATCCATATGTAAAGGCGGGAT
TAGTCAGGGAATGGAAAGTCCGGCCGTGGACCGTGGTGGCGGGTAGCAAG
TTGTGA
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Synonyms
Publications