NO21G02670.5, NO21G02670.5 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02670.5
Unique NameNO21G02670.5
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1994
Alignment locationchr21:821193..824164 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:821193..824164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO21G02670.5 vs.
Match: EWM29462.1 (ubiquitin-conjugating enzyme domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 160.6 bits (405), Expect = 1.000e-35
Identity = 72/104 (69.23%), Postives = 86/104 (82.69%), Query Frame = 0 
Query:  129 PSTTTTTPSSSSPSPFLRSWHGVAFIRRAVYGRGVFKFVLSLPPAYNDRDTWPRVRFLTLPLFHPMVHPRTGELDIRSFYPAWDPDRHYIVTVLTLLKKIFYMK 233
            P      PSS  P   LR+WHGVAFIRRA YGRG+FKF+L+LP AYND DTWPR+ FLT P++HP+VHP+TGELD+ +FYP WDP+RH+IVTVLTLLKKIFY+K
Sbjct:   13 PPLPPPPPSSQGPPSSLRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLT-PVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLK 115
The following BLAST results are available for this feature:
BLAST of NO21G02670.5 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29462.11.000e-3569.23ubiquitin-conjugating enzyme domain-containing pro... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02670NO21G02670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02670.5NO21G02670.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02670.5.cds1NO21G02670.5.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02670.5.cds2NO21G02670.5.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02670.5.cds3NO21G02670.5.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02670.5.cds4NO21G02670.5.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02670.5.cds5NO21G02670.5.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02670.5.cds6NO21G02670.5.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02670.5.cds7NO21G02670.5.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02670.5 ID=NO21G02670.5|Name=NO21G02670.5|organism=Nannochloropsis oceanica|type=mRNA|length=1994bp
AAACACACAGGACCCACACCCACAAGCATCATGCGCAACAGCACAACAAC
AAACACTACCCTCCCTCCCCGGCGCTCTTCTACACAAAGCCATGATGGCG
GCGGCAACGACGAGGAGTTAGACATAAGTGTGCTGTCATTTAGTCACCAG
TACTACGAACAGCAGGGACGAGAACGGGAGGGAGACAAGGGGACGGAAGG
AGAGGGTGAGGAGACCAACCCATCGCCGGTAATTACTGTGGAGGAGCAGG
CAGCAGCAGCGGCTTCAACTTTGGCAGGAGGAATGAAAGGGAAATCTGCA
GCAGCCATGGCACAGGCTGTCAAGGACTACAAGATCATGGTGGAGTACAA
GTGGCTCAAGAGGCAGGCACCGGCAGGTGTGTACCTTCTCCCCTCCTCCC
ATTCTTCCTCTTCTCCCTCCACCACCACCACCACCCCCTCCTCTTCTTCT
CCCTCCCCGTTTCTCCGCTCCTGGCACGGCGTGGCCTTCATCCGACGGGC
CGTGTACGGCCGAGGCGTCTTCAAGTTTGTGCTGTCCCTCCCCCCCGCCT
ACAACGACCGGGACACGTGGCCTCGTGTCCGCTTCCTGACCCTCCCCCTC
TTCCATCCCATGGTCCACCCCCGGACCGGAGAGCTGGACATTCGCTCCTT
CTACCCCGCCTGGGACCCCGACCGGCACTACATCGTCACCGTCCTCACCC
TTTTGAAGAAAATATTCTACATGAAGGTATGGACGTGTGTCCACCCTCCC
GTCCTCCTTCCCCCCCTTTTTCGCTTACTTCATTTGCGTTGCTCACCCTC
GTCATTTCTCTCCGTCTCCCTCCTCTTTATCTCTGCTGCCTCCTTCCCCG
CCCTCCCTCCCCCTCTGCCCTCTCTCCAGCCTCCGGACTTTGAACCTTTT
TTCTCCGCAGGCCCCGGAAAGCCCGCGCTTTTCAACCCAGAGGCAGCTGA
ATTGATGAAGACCGACCCGGCCGAGTACCTGCGACGGGTGGAGGAGTGTG
TGTCCCGCTCCCAGGAAAACGTCTACTGCCTCACGGACGATTCTCCCCTC
CGCTTCACCGAGCCCTCCCCCAAGCATGCAGCCTTCCACCAAGCTCTAAG
AGAGATGCACGACAAAGGGCTCGAGGCGACACATCCGCCGAAATTCTCCA
TCCTGGAGACCTTGCGAGGGATGGAGGGAGGGATGGAGGGAGGGAAGGAG
GGAGGGAAGGAGGGAGGGAGGGAGGGAGAGCAGGCGGAGGGCAAAAGACG
GGCTTGACCTCTCCAATGCGGTGATTAAGGGTAGAAGGGGGTGGGAAGGA
GAAAGATAAATGAGGGATGGAGGGAGAGAGGGTGACGGGGAGGTAAAATA
TGTATCTATGTAAAGAACAAACGAGTCAAGTCAGCGGGAACGAAAGCAAG
ACAGCGGTCAATGAAGGCTTGCAAGCTTCCTCACGTTGGCTCCCACCACA
CGACCTCTTTTTCACCCACCCTCTAACTTCTCCTTCCTCGTTCCCTCTTT
CCATTGTTGAGGAGTGGGGATGACGTCGTGGCTTTCAATGAAACGTATGT
ATGCTTTGACTGCCTGCTGCTGGTCAGTTCGTCCGCACCTGACCTACTTT
TCCCCACCATTCACCTCTCCCATCACCACCACTGCCCTGCTCGTCTTCCG
GGAGCAGCCCATGGAGAGATTTGTCGGTGAGGCCTATTCTCGGAGGTCCT
AATCTCGGGGGAATAAGCAGGCGACAACGGAAGGTTTACCGTGCAGGAGC
TGTCTGAATTCCTCCTTGTGGGCGAATGCCACGATGCGGGGACTCTCAAG
ACGTGGATGTTGCTGCCTGACGCTCTCTACTGAGTCTTACGGCTGAAATC
GACTGTCAAGATTTGCTGGGAGTGCACTATGAAATCAATACAACACCCGA
AACGGGTTCTTCAAGCTTATAAGACTAGTCAGGGCCACCAAAGGAAATAA
GGAAGCAAAAAAGGAAGCCAAATAAAGCATGGAGAGAAGATGGA
back to top

protein sequence of NO21G02670.5

>NO21G02670.5-protein ID=NO21G02670.5-protein|Name=NO21G02670.5|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MRNSTTTNTTLPPRRSSTQSHDGGGNDEELDISVLSFSHQYYEQQGRERE
GDKGTEGEGEETNPSPVITVEEQAAAAASTLAGGMKGKSAAAMAQAVKDY
KIMVEYKWLKRQAPAGVYLLPSSHSSSSPSTTTTTPSSSSPSPFLRSWHG
VAFIRRAVYGRGVFKFVLSLPPAYNDRDTWPRVRFLTLPLFHPMVHPRTG
ELDIRSFYPAWDPDRHYIVTVLTLLKKIFYMKVWTCVHPPVLLPPLFRLL
HLRCSPSSFLSVSLLFISAASFPALPPPLPSLQPPDFEPFFSAGPGKPAL
FNPEAAELMKTDPAEYLRRVEECVSRSQENVYCLTDDSPLRFTEPSPKHA
AFHQALREMHDKGLEATHPPKFSILETLRGMEGGMEGGKEGGKEGGREGE
QAEGKRRA*
back to top

mRNA from alignment at chr21:821193..824164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02670.5 ID=NO21G02670.5|Name=NO21G02670.5|organism=Nannochloropsis oceanica|type=mRNA|length=2972bp|location=Sequence derived from alignment at chr21:821193..824164- (Nannochloropsis oceanica)
AAACACACAGGACCCACACCCACAAGCATCATGCGCAACAGCACAACAAC
AAACACTACCCTCCCTCCCCGGCGCTCTTCTACACAAAGCCATGATGGCG
GCGGCAACGACGAGGAGTTAGACATAAGTGTGCTGTCATTTAGTCACCAG
TACTACGAACAGCAGGGACGAGAACGGGAGGGAGACAAGGGGACGGAAGG
AGAGGGTGAGGAGACCAACCCATCGCCGGTAATTACTGTGGAGGAGCAGG
CAGCAGCAGCGGCTTCAACTTTGGCAGGAGGAATGAAAGGGAAATCTGCA
GCAGCCATGGCACAGGTAGAGCTTAAACGGTCAGGGTGAAGTGTGTCTGA
TCAGGATGTCTCCTCTTCAGTCCTCCACCCATGTTTTCCTTTTCGATGCT
CAAGACTACGTCTTCCCTTTCTACCCCACTGTACATCCCTGTATTCGCTT
ATCGACCTTTCATTCTTCGTTTCTCCCCTCAGGCTGTCAAGGACTACAAG
ATCATGGTGGAGTACAAGTGGCTCAAGAGGCAGGCACCGGCAGGTTAGAC
AGGGGACAGAAAGAACGAGAGAAGGGGAGAGGAGGATGCGTGAATCCGGG
TGTGCGTGCATGTGTTCCCACGTTCAAATCACATACTTACCCTCCCTCCC
TCTATCCGTCCCCACACATCAGGTGTGTACCTTCTCCCCTCCTCCCATTC
TTCCTCTTCTCCCTCCACCACCACCACCACCCCCTCCTCTTCTTCTCCCT
CCCCGTTTCTCCGCTCCTGGCACGGCGTGGCCTTCATCCGACGGGCCGTG
TACGGCCGAGGCGTCTTCAAGTTTGTGCTGTCCCTCCCCCCCGCCTACAA
CGACCGGGACACGTGGCCTCGTGTCCGCTTCCTGACCCTCCCCCTCTTCC
ATCCCATGGTCCACCCCCGGGTACTGCCACTGCGCCTCCTTCCCTCCTTC
CCTCCTTCCCTCCTTCCCTTCCTTCCCTTATTCCTCCTTCCCTCCATAAC
GGAATAGTGTCAAGAATGAGCCTGACTTTCACTCGGCCCCCTATCCCTCC
CTTCCTCCCTCCCGCCCTTTTCCCATACTCCCTCCCTAGACCGGAGAGCT
GGACATTCGCTCCTTCTACCCCGCCTGGGACCCCGACCGGCACTACATCG
TCACCGTCCTCACCCTTTTGAAGAAAATATTCTACATGAAGGTATGGACG
TGTGTCCACCCTCCCGTCCTCCTTCCCCCCCTTTTTCGCTTACTTCATTT
GCGTTGCTCACCCTCGTCATTTCTCTCCGTCTCCCTCCTCTTTATCTCTG
CTGCCTCCTTCCCCGCCCTCCCTCCCCCTCTGCCCTCTCTCCAGCCTCCG
GACTTTGAACCTTTTTTCTCCGCAGGCCCCGGAAAGCCCGCGCTTTTCAA
CCCAGAGGCAGCTGAATTGTACGAAAGGAGGGAGGGAGGGAGGGAGGGAG
GGAAAGAGAGAGACATCCCGACCAGGATGAGGAGAAGAGGATGAAAAATG
CTCTCCTCTTTCTCAGACGAAAAGTGGTAACACCCAAAGGGAGGGAAAGA
AGGAGGGAGGGAAGGAGGAAGGGAAGTGCTAAGCTCACTTGCACATGCAC
ACAGGATGAAGACCGACCCGGCCGAGTACCTGCGACGGGTGGAGGAGTGT
GTGTCCCGCTCCCAGGTGAGGCGGGAGGGAGGGACGGAGGGAGCAAAGGC
GAAGAGGGCGCTCGATAAGATCCGAGAATAGGGAAAGGGAGGGAGGGAGG
GAGAAGGAAATGTTCTCATGGTGTCAAACATTTACTCACGACTATCAGGA
AAACGTCTACTGCCTCACGGACGATTCTCCCCTCCGCTTCACCGAGGTAC
GCTCCCCCTCTCCTTCCGCCCTGCTTTCCTCCCCTGCCTGCCGCGTTTTC
CTTCCGTCTAGATGCTCCACCGTCCCGCAAGCTGCAGGGGGAGGTCAAGA
GGGACGGTCGTTGTGAAGAAAACCCTTTCACCTCCCTTCGCAACCCGCGC
TCTCTCCCTCCTTCCCACCCTTCCCCTCCCCTCCCCATAGCCCTCCCCCA
AGCATGCAGCCTTCCACCAAGCTCTAAGAGAGATGCACGACAAAGGGCTC
GAGGCGACACATCCGCCGAAATTCTCCATCCTGGAGACCTTGCGAGGGAT
GGAGGGAGGGATGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGGG
AGGGAGAGCAGGCGGAGGGCAAAAGACGGGCTTGACCTCTCCAATGCGGT
GATTAAGGGTAGAAGGGGGTGGGAAGGAGAAAGATAAATGAGGGATGGAG
GGAGAGAGGGTGACGGGGAGGTAAAATATGTATCTATGTAAAGAACAAAC
GAGTCAAGTCAGCGGGAACGAAAGCAAGACAGCGGTCAATGAAGGCTTGC
AAGCTTCCTCACGTTGGCTCCCACCACACGACCTCTTTTTCACCCACCCT
CTAACTTCTCCTTCCTCGTTCCCTCTTTCCATTGTTGAGGAGTGGGGATG
ACGTCGTGGCTTTCAATGAAACGTATGTATGCTTTGACTGCCTGCTGCTG
GTCAGTTCGTCCGCACCTGACCTACTTTTCCCCACCATTCACCTCTCCCA
TCACCACCACTGCCCTGCTCGTCTTCCGGGAGCAGCCCATGGAGAGATTT
GTCGGTGAGGCCTATTCTCGGAGGTCCTAATCTCGGGGGAATAAGCAGGC
GACAACGGAAGGTTTACCGTGCAGGAGCTGTCTGAATTCCTCCTTGTGGG
CGAATGCCACGATGCGGGGACTCTCAAGACGTGGATGTTGCTGCCTGACG
CTCTCTACTGAGTCTTACGGCTGAAATCGACTGTCAAGATTTGCTGGGAG
TGCACTATGAAATCAATACAACACCCGAAACGGGTTCTTCAAGCTTATAA
GACTAGTCAGGGCCACCAAAGGAAATAAGGAAGCAAAAAAGGAAGCCAAA
TAAAGCATGGAGAGAAGATGGA
back to top

Coding sequence (CDS) from alignment at chr21:821193..824164-

>NO21G02670.5 ID=NO21G02670.5|Name=NO21G02670.5|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at chr21:821193..824164- (Nannochloropsis oceanica)
ATGCGCAACAGCACAACAACAAACACTACCCTCCCTCCCCGGCGCTCTTC
TACACAAAGCCATGATGGCGGCGGCAACGACGAGGAGTTAGACATAAGTG
TGCTGTCATTTAGTCACCAGTACTACGAACAGCAGGGACGAGAACGGGAG
GGAGACAAGGGGACGGAAGGAGAGGGTGAGGAGACCAACCCATCGCCGGT
AATTACTGTGGAGGAGCAGGCAGCAGCAGCGGCTTCAACTTTGGCAGGAG
GAATGAAAGGGAAATCTGCAGCAGCCATGGCACAGGCTGTCAAGGACTAC
AAGATCATGGTGGAGTACAAGTGGCTCAAGAGGCAGGCACCGGCAGGTGT
GTACCTTCTCCCCTCCTCCCATTCTTCCTCTTCTCCCTCCACCACCACCA
CCACCCCCTCCTCTTCTTCTCCCTCCCCGTTTCTCCGCTCCTGGCACGGC
GTGGCCTTCATCCGACGGGCCGTGTACGGCCGAGGCGTCTTCAAGTTTGT
GCTGTCCCTCCCCCCCGCCTACAACGACCGGGACACGTGGCCTCGTGTCC
GCTTCCTGACCCTCCCCCTCTTCCATCCCATGGTCCACCCCCGGACCGGA
GAGCTGGACATTCGCTCCTTCTACCCCGCCTGGGACCCCGACCGGCACTA
CATCGTCACCGTCCTCACCCTTTTGAAGAAAATATTCTACATGAAGGTAT
GGACGTGTGTCCACCCTCCCGTCCTCCTTCCCCCCCTTTTTCGCTTACTT
CATTTGCGTTGCTCACCCTCGTCATTTCTCTCCGTCTCCCTCCTCTTTAT
CTCTGCTGCCTCCTTCCCCGCCCTCCCTCCCCCTCTGCCCTCTCTCCAGC
CTCCGGACTTTGAACCTTTTTTCTCCGCAGGCCCCGGAAAGCCCGCGCTT
TTCAACCCAGAGGCAGCTGAATTGATGAAGACCGACCCGGCCGAGTACCT
GCGACGGGTGGAGGAGTGTGTGTCCCGCTCCCAGGAAAACGTCTACTGCC
TCACGGACGATTCTCCCCTCCGCTTCACCGAGCCCTCCCCCAAGCATGCA
GCCTTCCACCAAGCTCTAAGAGAGATGCACGACAAAGGGCTCGAGGCGAC
ACATCCGCCGAAATTCTCCATCCTGGAGACCTTGCGAGGGATGGAGGGAG
GGATGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGAG
CAGGCGGAGGGCAAAAGACGGGCTTGA
back to top
Synonyms
Publications