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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr21 | genome | chr21:821193..824164 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G02670.2 vs.
Match: EWM29462.1 (ubiquitin-conjugating enzyme domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 221.9 bits (564), Expect = 3.000e-54 Identity = 105/165 (63.64%), Postives = 126/165 (76.36%), Query Frame = 0
Query: 129 PSTTTTTPSSSSPSPFLRSWHGVAFIRRAVYGRGVFKFVLSLPPAYNDRDTWPRVRFLTLPLFHPMVHPRTGELDIRSFYPAWDPDRHYIVTVLTLLKKIFYMKPPDFEPFFSAGPGKPALFNPEAAELMKTDPAEYLRRVEECVSRSQENVYCLTDDSPLRFTE 294
P PSS P LR+WHGVAFIRRA YGRG+FKF+L+LP AYND DTWPR+ FLT P++HP+VHP+TGELD+ +FYP WDP+RH+IVTVLTLLKKIFY+KP D++ GPGKP FNPEAA L + AEYLRRVE CV+ SQE+V+ D S +FTE
Sbjct: 13 PPLPPPPPSSQGPPSSLRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLT-PVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLI-VGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTE 175
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G02670.2 ID=NO21G02670.2|Name=NO21G02670.2|organism=Nannochloropsis oceanica|type=mRNA|length=2035bp
AAACACACAGGACCCACACCCACAAGCATCATGCGCAACAGCACAACAAC
AAACACTACCCTCCCTCCCCGGCGCTCTTCTACACAAAGCCATGATGGCG
GCGGCAACGACGAGGAGTTAGACATAAGTGTGCTGTCATTTAGTCACCAG
TACTACGAACAGCAGGGACGAGAACGGGAGGGAGACAAGGGGACGGAAGG
AGAGGGTGAGGAGACCAACCCATCGCCGGTAATTACTGTGGAGGAGCAGG
CAGCAGCAGCGGCTTCAACTTTGGCAGGAGGAATGAAAGGGAAATCTGCA
GCAGCCATGGCACAGGCTGTCAAGGACTACAAGATCATGGTGGAGTACAA
GTGGCTCAAGAGGCAGGCACCGGCAGGTGTGTACCTTCTCCCCTCCTCCC
ATTCTTCCTCTTCTCCCTCCACCACCACCACCACCCCCTCCTCTTCTTCT
CCCTCCCCGTTTCTCCGCTCCTGGCACGGCGTGGCCTTCATCCGACGGGC
CGTGTACGGCCGAGGCGTCTTCAAGTTTGTGCTGTCCCTCCCCCCCGCCT
ACAACGACCGGGACACGTGGCCTCGTGTCCGCTTCCTGACCCTCCCCCTC
TTCCATCCCATGGTCCACCCCCGGACCGGAGAGCTGGACATTCGCTCCTT
CTACCCCGCCTGGGACCCCGACCGGCACTACATCGTCACCGTCCTCACCC
TTTTGAAGAAAATATTCTACATGAAGCCTCCGGACTTTGAACCTTTTTTC
TCCGCAGGCCCCGGAAAGCCCGCGCTTTTCAACCCAGAGGCAGCTGAATT
GATGAAGACCGACCCGGCCGAGTACCTGCGACGGGTGGAGGAGTGTGTGT
CCCGCTCCCAGGAAAACGTCTACTGCCTCACGGACGATTCTCCCCTCCGC
TTCACCGAGGTACGCTCCCCCTCTCCTTCCGCCCTGCTTTCCTCCCCTGC
CTGCCGCGTTTTCCTTCCGTCTAGATGCTCCACCGTCCCGCAAGCTGCAG
GGGGAGGTCAAGAGGGACGGTCGTTGTGAAGAAAACCCTTTCACCTCCCT
TCGCAACCCGCGCTCTCTCCCTCCTTCCCACCCTTCCCCTCCCCTCCCCA
TAGCCCTCCCCCAAGCATGCAGCCTTCCACCAAGCTCTAAGAGAGATGCA
CGACAAAGGGCTCGAGGCGACACATCCGCCGAAATTCTCCATCCTGGAGA
CCTTGCGAGGGATGGAGGGAGGGATGGAGGGAGGGAAGGAGGGAGGGAAG
GAGGGAGGGAGGGAGGGAGAGCAGGCGGAGGGCAAAAGACGGGCTTGACC
TCTCCAATGCGGTGATTAAGGGTAGAAGGGGGTGGGAAGGAGAAAGATAA
ATGAGGGATGGAGGGAGAGAGGGTGACGGGGAGGTAAAATATGTATCTAT
GTAAAGAACAAACGAGTCAAGTCAGCGGGAACGAAAGCAAGACAGCGGTC
AATGAAGGCTTGCAAGCTTCCTCACGTTGGCTCCCACCACACGACCTCTT
TTTCACCCACCCTCTAACTTCTCCTTCCTCGTTCCCTCTTTCCATTGTTG
AGGAGTGGGGATGACGTCGTGGCTTTCAATGAAACGTATGTATGCTTTGA
CTGCCTGCTGCTGGTCAGTTCGTCCGCACCTGACCTACTTTTCCCCACCA
TTCACCTCTCCCATCACCACCACTGCCCTGCTCGTCTTCCGGGAGCAGCC
CATGGAGAGATTTGTCGGTGAGGCCTATTCTCGGAGGTCCTAATCTCGGG
GGAATAAGCAGGCGACAACGGAAGGTTTACCGTGCAGGAGCTGTCTGAAT
TCCTCCTTGTGGGCGAATGCCACGATGCGGGGACTCTCAAGACGTGGATG
TTGCTGCCTGACGCTCTCTACTGAGTCTTACGGCTGAAATCGACTGTCAA
GATTTGCTGGGAGTGCACTATGAAATCAATACAACACCCGAAACGGGTTC
TTCAAGCTTATAAGACTAGTCAGGGCCACCAAAGGAAATAAGGAAGCAAA
AAAGGAAGCCAAATAAAGCATGGAGAGAAGATGGA back to topprotein sequence of NO21G02670.2 >NO21G02670.2-protein ID=NO21G02670.2-protein|Name=NO21G02670.2|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MRNSTTTNTTLPPRRSSTQSHDGGGNDEELDISVLSFSHQYYEQQGRERE
GDKGTEGEGEETNPSPVITVEEQAAAAASTLAGGMKGKSAAAMAQAVKDY
KIMVEYKWLKRQAPAGVYLLPSSHSSSSPSTTTTTPSSSSPSPFLRSWHG
VAFIRRAVYGRGVFKFVLSLPPAYNDRDTWPRVRFLTLPLFHPMVHPRTG
ELDIRSFYPAWDPDRHYIVTVLTLLKKIFYMKPPDFEPFFSAGPGKPALF
NPEAAELMKTDPAEYLRRVEECVSRSQENVYCLTDDSPLRFTEVRSPSPS
ALLSSPACRVFLPSRCSTVPQAAGGGQEGRSL* back to topmRNA from alignment at chr21:821193..824164- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G02670.2 ID=NO21G02670.2|Name=NO21G02670.2|organism=Nannochloropsis oceanica|type=mRNA|length=2972bp|location=Sequence derived from alignment at chr21:821193..824164- (Nannochloropsis oceanica)
AAACACACAGGACCCACACCCACAAGCATCATGCGCAACAGCACAACAAC
AAACACTACCCTCCCTCCCCGGCGCTCTTCTACACAAAGCCATGATGGCG
GCGGCAACGACGAGGAGTTAGACATAAGTGTGCTGTCATTTAGTCACCAG
TACTACGAACAGCAGGGACGAGAACGGGAGGGAGACAAGGGGACGGAAGG
AGAGGGTGAGGAGACCAACCCATCGCCGGTAATTACTGTGGAGGAGCAGG
CAGCAGCAGCGGCTTCAACTTTGGCAGGAGGAATGAAAGGGAAATCTGCA
GCAGCCATGGCACAGGTAGAGCTTAAACGGTCAGGGTGAAGTGTGTCTGA
TCAGGATGTCTCCTCTTCAGTCCTCCACCCATGTTTTCCTTTTCGATGCT
CAAGACTACGTCTTCCCTTTCTACCCCACTGTACATCCCTGTATTCGCTT
ATCGACCTTTCATTCTTCGTTTCTCCCCTCAGGCTGTCAAGGACTACAAG
ATCATGGTGGAGTACAAGTGGCTCAAGAGGCAGGCACCGGCAGGTTAGAC
AGGGGACAGAAAGAACGAGAGAAGGGGAGAGGAGGATGCGTGAATCCGGG
TGTGCGTGCATGTGTTCCCACGTTCAAATCACATACTTACCCTCCCTCCC
TCTATCCGTCCCCACACATCAGGTGTGTACCTTCTCCCCTCCTCCCATTC
TTCCTCTTCTCCCTCCACCACCACCACCACCCCCTCCTCTTCTTCTCCCT
CCCCGTTTCTCCGCTCCTGGCACGGCGTGGCCTTCATCCGACGGGCCGTG
TACGGCCGAGGCGTCTTCAAGTTTGTGCTGTCCCTCCCCCCCGCCTACAA
CGACCGGGACACGTGGCCTCGTGTCCGCTTCCTGACCCTCCCCCTCTTCC
ATCCCATGGTCCACCCCCGGGTACTGCCACTGCGCCTCCTTCCCTCCTTC
CCTCCTTCCCTCCTTCCCTTCCTTCCCTTATTCCTCCTTCCCTCCATAAC
GGAATAGTGTCAAGAATGAGCCTGACTTTCACTCGGCCCCCTATCCCTCC
CTTCCTCCCTCCCGCCCTTTTCCCATACTCCCTCCCTAGACCGGAGAGCT
GGACATTCGCTCCTTCTACCCCGCCTGGGACCCCGACCGGCACTACATCG
TCACCGTCCTCACCCTTTTGAAGAAAATATTCTACATGAAGGTATGGACG
TGTGTCCACCCTCCCGTCCTCCTTCCCCCCCTTTTTCGCTTACTTCATTT
GCGTTGCTCACCCTCGTCATTTCTCTCCGTCTCCCTCCTCTTTATCTCTG
CTGCCTCCTTCCCCGCCCTCCCTCCCCCTCTGCCCTCTCTCCAGCCTCCG
GACTTTGAACCTTTTTTCTCCGCAGGCCCCGGAAAGCCCGCGCTTTTCAA
CCCAGAGGCAGCTGAATTGTACGAAAGGAGGGAGGGAGGGAGGGAGGGAG
GGAAAGAGAGAGACATCCCGACCAGGATGAGGAGAAGAGGATGAAAAATG
CTCTCCTCTTTCTCAGACGAAAAGTGGTAACACCCAAAGGGAGGGAAAGA
AGGAGGGAGGGAAGGAGGAAGGGAAGTGCTAAGCTCACTTGCACATGCAC
ACAGGATGAAGACCGACCCGGCCGAGTACCTGCGACGGGTGGAGGAGTGT
GTGTCCCGCTCCCAGGTGAGGCGGGAGGGAGGGACGGAGGGAGCAAAGGC
GAAGAGGGCGCTCGATAAGATCCGAGAATAGGGAAAGGGAGGGAGGGAGG
GAGAAGGAAATGTTCTCATGGTGTCAAACATTTACTCACGACTATCAGGA
AAACGTCTACTGCCTCACGGACGATTCTCCCCTCCGCTTCACCGAGGTAC
GCTCCCCCTCTCCTTCCGCCCTGCTTTCCTCCCCTGCCTGCCGCGTTTTC
CTTCCGTCTAGATGCTCCACCGTCCCGCAAGCTGCAGGGGGAGGTCAAGA
GGGACGGTCGTTGTGAAGAAAACCCTTTCACCTCCCTTCGCAACCCGCGC
TCTCTCCCTCCTTCCCACCCTTCCCCTCCCCTCCCCATAGCCCTCCCCCA
AGCATGCAGCCTTCCACCAAGCTCTAAGAGAGATGCACGACAAAGGGCTC
GAGGCGACACATCCGCCGAAATTCTCCATCCTGGAGACCTTGCGAGGGAT
GGAGGGAGGGATGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGGG
AGGGAGAGCAGGCGGAGGGCAAAAGACGGGCTTGACCTCTCCAATGCGGT
GATTAAGGGTAGAAGGGGGTGGGAAGGAGAAAGATAAATGAGGGATGGAG
GGAGAGAGGGTGACGGGGAGGTAAAATATGTATCTATGTAAAGAACAAAC
GAGTCAAGTCAGCGGGAACGAAAGCAAGACAGCGGTCAATGAAGGCTTGC
AAGCTTCCTCACGTTGGCTCCCACCACACGACCTCTTTTTCACCCACCCT
CTAACTTCTCCTTCCTCGTTCCCTCTTTCCATTGTTGAGGAGTGGGGATG
ACGTCGTGGCTTTCAATGAAACGTATGTATGCTTTGACTGCCTGCTGCTG
GTCAGTTCGTCCGCACCTGACCTACTTTTCCCCACCATTCACCTCTCCCA
TCACCACCACTGCCCTGCTCGTCTTCCGGGAGCAGCCCATGGAGAGATTT
GTCGGTGAGGCCTATTCTCGGAGGTCCTAATCTCGGGGGAATAAGCAGGC
GACAACGGAAGGTTTACCGTGCAGGAGCTGTCTGAATTCCTCCTTGTGGG
CGAATGCCACGATGCGGGGACTCTCAAGACGTGGATGTTGCTGCCTGACG
CTCTCTACTGAGTCTTACGGCTGAAATCGACTGTCAAGATTTGCTGGGAG
TGCACTATGAAATCAATACAACACCCGAAACGGGTTCTTCAAGCTTATAA
GACTAGTCAGGGCCACCAAAGGAAATAAGGAAGCAAAAAAGGAAGCCAAA
TAAAGCATGGAGAGAAGATGGA back to topCoding sequence (CDS) from alignment at chr21:821193..824164- >NO21G02670.2 ID=NO21G02670.2|Name=NO21G02670.2|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at chr21:821193..824164- (Nannochloropsis oceanica)
ATGCGCAACAGCACAACAACAAACACTACCCTCCCTCCCCGGCGCTCTTC
TACACAAAGCCATGATGGCGGCGGCAACGACGAGGAGTTAGACATAAGTG
TGCTGTCATTTAGTCACCAGTACTACGAACAGCAGGGACGAGAACGGGAG
GGAGACAAGGGGACGGAAGGAGAGGGTGAGGAGACCAACCCATCGCCGGT
AATTACTGTGGAGGAGCAGGCAGCAGCAGCGGCTTCAACTTTGGCAGGAG
GAATGAAAGGGAAATCTGCAGCAGCCATGGCACAGGCTGTCAAGGACTAC
AAGATCATGGTGGAGTACAAGTGGCTCAAGAGGCAGGCACCGGCAGGTGT
GTACCTTCTCCCCTCCTCCCATTCTTCCTCTTCTCCCTCCACCACCACCA
CCACCCCCTCCTCTTCTTCTCCCTCCCCGTTTCTCCGCTCCTGGCACGGC
GTGGCCTTCATCCGACGGGCCGTGTACGGCCGAGGCGTCTTCAAGTTTGT
GCTGTCCCTCCCCCCCGCCTACAACGACCGGGACACGTGGCCTCGTGTCC
GCTTCCTGACCCTCCCCCTCTTCCATCCCATGGTCCACCCCCGGACCGGA
GAGCTGGACATTCGCTCCTTCTACCCCGCCTGGGACCCCGACCGGCACTA
CATCGTCACCGTCCTCACCCTTTTGAAGAAAATATTCTACATGAAGCCTC
CGGACTTTGAACCTTTTTTCTCCGCAGGCCCCGGAAAGCCCGCGCTTTTC
AACCCAGAGGCAGCTGAATTGATGAAGACCGACCCGGCCGAGTACCTGCG
ACGGGTGGAGGAGTGTGTGTCCCGCTCCCAGGAAAACGTCTACTGCCTCA
CGGACGATTCTCCCCTCCGCTTCACCGAGGTACGCTCCCCCTCTCCTTCC
GCCCTGCTTTCCTCCCCTGCCTGCCGCGTTTTCCTTCCGTCTAGATGCTC
CACCGTCCCGCAAGCTGCAGGGGGAGGTCAAGAGGGACGGTCGTTGTGA back to top
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