NO21G02530.1, NO21G02530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02530.1
Unique NameNO21G02530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1470
Alignment locationchr21:770744..772213 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:770744..772213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02530.1 vs.
Match: EWM29466.1 (Phosphatidylethanolamine-binding protein PEBP [Nannochloropsis gaditana])

HSP 1 Score: 432.6 bits (1111), Expect = 1.300e-117
Identity = 219/383 (57.18%), Postives = 264/383 (68.93%), Query Frame = 0 
Query:    1 MSKTKQQAHTTSQELQSVGLIPSVLPEGFRSTYSINATFGMLNIDCGAEVPLHALDDHSPVYSVLEARDEAYYTFILVDPDSPTPEAPHDRELLLHLVTNVPGKQADSRIGEIVVPYRMPSQNQGQSRGVHRYLLAILEQPQGGQQIVHIARPKYRTNFSIAEYAKLYRFKLVGATFFYSSWDEAHAQGTNATTAMVRLHDSLEYAKSMLEKANLLKELVLEGSVHFIVPLLLRFNGETVCAGDEVPSAVADTTPVITF-----DSEKDQSFYTVVIVDADFPSIHQATDRALLLMLTANIPSSEGDSSVGDVIMHYMSPSSFPGGTGLHRYFVLLLEQHGGILEEGAVDIPDRRRGFQLHEFMKAHASLEAVGATFFLGRRK 379
            M+K K +A T SQEL + GLIP VLP+ FRS YS+NATFG  N D GA+VP   +D   PVY ++EAR  +YYTFILVDPDS   +       LLHLVTNV G+Q DSR G  VVPY++  Q+QG   G HRYLL  LEQPQ GQQ +HIA PKYRT FS+  +  + + K VGAT  + SWD+     +N+T A  R  DSL YA+SM+ K+ LL ELVLEGSVHF VP+ L  N E V AGDEVP+ V D  PV+ F     +  K  + YTV+  DADFPSIHQ TDR++LLML  NIP + GDS +GD ++ Y+SP    G TG+HRYFVLLLEQHGG LEEGA+D P+ RR F  H+F+K H SLEAV ATFFLGRRK
Sbjct:    8 MTKLKHKALTVSQELSAAGLIPDVLPDDFRSAYSVNATFGCNNFDSGAKVPPGEMDHPHPVYKLIEARHGSYYTFILVDPDSSPMQGSRSEVQLLHLVTNVSGQQPDSRNGNEVVPYKISRQDQGHIHGTHRYLLIALEQPQEGQQQLHIAPPKYRTQFSVLNFIHMNKVKPVGATLLHVSWDDYRPSKSNSTNAQAREQDSLAYAESMVRKSKLLNELVLEGSVHFKVPVTLTINEEIVNAGDEVPAQVMDLAPVVQFHPGLEEVRKANALYTVICADADFPSIHQPTDRSMLLMLATNIPGTSGDSRIGDPVVPYVSPLRLAGSTGIHRYFVLLLEQHGGALEEGAIDPPENRRAFSFHDFLKTHTSLEAVNATFFLGRRK 390
The following BLAST results are available for this feature:
BLAST of NO21G02530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29466.11.300e-11757.18Phosphatidylethanolamine-binding protein PEBP [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02530NO21G02530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02530.1NO21G02530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02530.1.cds1NO21G02530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02530.1 ID=NO21G02530.1|Name=NO21G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp
CCACACACCACACACCATTCTTCCGCCAGTCAGACGGATCACAGAGGCGC
GCGTCGTATCGCGGCTGCCGCGAGACGCTAATGCCACCGAAAAGTATACA
AAAACAGTATTTTAAGTCAAACTCAGCTACTTGTATCAGCCTTAGAGCCC
TGACAGCAGAGAAAGCATCATTTCCAAAAAAATATCAAACCATCATTCAT
TTTTCTGAGAAACGACGTGGATAAATCCACGTCATCTTTGCCACGCAACA
TCGTTTATCTACCCTGACCTACTTTTGTAGACCATAGTACAGCATCGATT
ATTTCAAGCCTCGTAAAGCAATCACATCCAATGAGCAAAACAAAGCAGCA
GGCCCACACTACCTCTCAGGAGCTGCAGAGCGTGGGACTGATTCCTTCCG
TCTTGCCCGAGGGCTTTCGAAGCACTTACTCTATCAATGCCACCTTCGGG
ATGCTTAATATAGACTGTGGGGCTGAAGTACCTTTGCATGCCCTGGATGA
CCATTCCCCAGTCTACTCTGTGTTGGAAGCCCGAGATGAAGCCTACTACA
CATTTATCTTGGTGGACCCAGATTCTCCCACTCCGGAAGCGCCCCACGAC
CGCGAGCTCCTTTTGCACCTGGTCACAAACGTACCAGGAAAGCAAGCAGA
CAGTCGAATTGGTGAGATCGTTGTGCCTTACCGCATGCCAAGCCAGAACC
AGGGTCAGAGCCGCGGCGTGCATCGCTATCTCTTGGCCATCCTGGAGCAA
CCCCAGGGAGGGCAGCAAATTGTGCACATTGCCCGCCCAAAATACCGCAC
CAATTTTTCAATAGCCGAATATGCGAAACTTTACAGGTTTAAACTTGTTG
GAGCGACCTTCTTCTACTCGTCGTGGGACGAGGCTCACGCGCAAGGGACC
AACGCTACAACCGCCATGGTACGGCTGCACGATTCCCTTGAGTACGCCAA
ATCCATGCTGGAGAAGGCAAATCTTCTCAAAGAGCTCGTGTTGGAAGGGA
GCGTACATTTTATCGTGCCCCTCTTACTGAGATTCAATGGAGAGACTGTG
TGTGCAGGGGATGAAGTGCCTTCCGCTGTAGCTGATACCACGCCCGTCAT
AACCTTTGACAGTGAAAAGGATCAGTCATTCTATACGGTGGTGATTGTAG
ATGCGGATTTCCCCTCCATCCATCAGGCCACGGATCGCGCCCTGCTATTG
ATGCTCACAGCGAATATTCCAAGCTCTGAGGGTGACAGTAGCGTGGGGGA
CGTGATTATGCATTACATGTCTCCTTCATCCTTTCCAGGGGGCACGGGGT
TGCATCGTTATTTCGTCTTGCTTCTGGAGCAGCACGGTGGTATTTTGGAG
GAAGGTGCTGTCGATATACCGGATCGCCGCCGAGGATTTCAGCTTCACGA
ATTTATGAAGGCACATGCCAGCCTTGAAGCGGTGGGTGCCACATTCTTTT
TGGGGCGACGCAAGGAGTAA
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protein sequence of NO21G02530.1

>NO21G02530.1-protein ID=NO21G02530.1-protein|Name=NO21G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MSKTKQQAHTTSQELQSVGLIPSVLPEGFRSTYSINATFGMLNIDCGAEV
PLHALDDHSPVYSVLEARDEAYYTFILVDPDSPTPEAPHDRELLLHLVTN
VPGKQADSRIGEIVVPYRMPSQNQGQSRGVHRYLLAILEQPQGGQQIVHI
ARPKYRTNFSIAEYAKLYRFKLVGATFFYSSWDEAHAQGTNATTAMVRLH
DSLEYAKSMLEKANLLKELVLEGSVHFIVPLLLRFNGETVCAGDEVPSAV
ADTTPVITFDSEKDQSFYTVVIVDADFPSIHQATDRALLLMLTANIPSSE
GDSSVGDVIMHYMSPSSFPGGTGLHRYFVLLLEQHGGILEEGAVDIPDRR
RGFQLHEFMKAHASLEAVGATFFLGRRKE*
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mRNA from alignment at chr21:770744..772213-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02530.1 ID=NO21G02530.1|Name=NO21G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp|location=Sequence derived from alignment at chr21:770744..772213- (Nannochloropsis oceanica)
CCACACACCACACACCATTCTTCCGCCAGTCAGACGGATCACAGAGGCGC
GCGTCGTATCGCGGCTGCCGCGAGACGCTAATGCCACCGAAAAGTATACA
AAAACAGTATTTTAAGTCAAACTCAGCTACTTGTATCAGCCTTAGAGCCC
TGACAGCAGAGAAAGCATCATTTCCAAAAAAATATCAAACCATCATTCAT
TTTTCTGAGAAACGACGTGGATAAATCCACGTCATCTTTGCCACGCAACA
TCGTTTATCTACCCTGACCTACTTTTGTAGACCATAGTACAGCATCGATT
ATTTCAAGCCTCGTAAAGCAATCACATCCAATGAGCAAAACAAAGCAGCA
GGCCCACACTACCTCTCAGGAGCTGCAGAGCGTGGGACTGATTCCTTCCG
TCTTGCCCGAGGGCTTTCGAAGCACTTACTCTATCAATGCCACCTTCGGG
ATGCTTAATATAGACTGTGGGGCTGAAGTACCTTTGCATGCCCTGGATGA
CCATTCCCCAGTCTACTCTGTGTTGGAAGCCCGAGATGAAGCCTACTACA
CATTTATCTTGGTGGACCCAGATTCTCCCACTCCGGAAGCGCCCCACGAC
CGCGAGCTCCTTTTGCACCTGGTCACAAACGTACCAGGAAAGCAAGCAGA
CAGTCGAATTGGTGAGATCGTTGTGCCTTACCGCATGCCAAGCCAGAACC
AGGGTCAGAGCCGCGGCGTGCATCGCTATCTCTTGGCCATCCTGGAGCAA
CCCCAGGGAGGGCAGCAAATTGTGCACATTGCCCGCCCAAAATACCGCAC
CAATTTTTCAATAGCCGAATATGCGAAACTTTACAGGTTTAAACTTGTTG
GAGCGACCTTCTTCTACTCGTCGTGGGACGAGGCTCACGCGCAAGGGACC
AACGCTACAACCGCCATGGTACGGCTGCACGATTCCCTTGAGTACGCCAA
ATCCATGCTGGAGAAGGCAAATCTTCTCAAAGAGCTCGTGTTGGAAGGGA
GCGTACATTTTATCGTGCCCCTCTTACTGAGATTCAATGGAGAGACTGTG
TGTGCAGGGGATGAAGTGCCTTCCGCTGTAGCTGATACCACGCCCGTCAT
AACCTTTGACAGTGAAAAGGATCAGTCATTCTATACGGTGGTGATTGTAG
ATGCGGATTTCCCCTCCATCCATCAGGCCACGGATCGCGCCCTGCTATTG
ATGCTCACAGCGAATATTCCAAGCTCTGAGGGTGACAGTAGCGTGGGGGA
CGTGATTATGCATTACATGTCTCCTTCATCCTTTCCAGGGGGCACGGGGT
TGCATCGTTATTTCGTCTTGCTTCTGGAGCAGCACGGTGGTATTTTGGAG
GAAGGTGCTGTCGATATACCGGATCGCCGCCGAGGATTTCAGCTTCACGA
ATTTATGAAGGCACATGCCAGCCTTGAAGCGGTGGGTGCCACATTCTTTT
TGGGGCGACGCAAGGAGTAA
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Coding sequence (CDS) from alignment at chr21:770744..772213-

>NO21G02530.1 ID=NO21G02530.1|Name=NO21G02530.1|organism=Nannochloropsis oceanica|type=CDS|length=1140bp|location=Sequence derived from alignment at chr21:770744..772213- (Nannochloropsis oceanica)
ATGAGCAAAACAAAGCAGCAGGCCCACACTACCTCTCAGGAGCTGCAGAG
CGTGGGACTGATTCCTTCCGTCTTGCCCGAGGGCTTTCGAAGCACTTACT
CTATCAATGCCACCTTCGGGATGCTTAATATAGACTGTGGGGCTGAAGTA
CCTTTGCATGCCCTGGATGACCATTCCCCAGTCTACTCTGTGTTGGAAGC
CCGAGATGAAGCCTACTACACATTTATCTTGGTGGACCCAGATTCTCCCA
CTCCGGAAGCGCCCCACGACCGCGAGCTCCTTTTGCACCTGGTCACAAAC
GTACCAGGAAAGCAAGCAGACAGTCGAATTGGTGAGATCGTTGTGCCTTA
CCGCATGCCAAGCCAGAACCAGGGTCAGAGCCGCGGCGTGCATCGCTATC
TCTTGGCCATCCTGGAGCAACCCCAGGGAGGGCAGCAAATTGTGCACATT
GCCCGCCCAAAATACCGCACCAATTTTTCAATAGCCGAATATGCGAAACT
TTACAGGTTTAAACTTGTTGGAGCGACCTTCTTCTACTCGTCGTGGGACG
AGGCTCACGCGCAAGGGACCAACGCTACAACCGCCATGGTACGGCTGCAC
GATTCCCTTGAGTACGCCAAATCCATGCTGGAGAAGGCAAATCTTCTCAA
AGAGCTCGTGTTGGAAGGGAGCGTACATTTTATCGTGCCCCTCTTACTGA
GATTCAATGGAGAGACTGTGTGTGCAGGGGATGAAGTGCCTTCCGCTGTA
GCTGATACCACGCCCGTCATAACCTTTGACAGTGAAAAGGATCAGTCATT
CTATACGGTGGTGATTGTAGATGCGGATTTCCCCTCCATCCATCAGGCCA
CGGATCGCGCCCTGCTATTGATGCTCACAGCGAATATTCCAAGCTCTGAG
GGTGACAGTAGCGTGGGGGACGTGATTATGCATTACATGTCTCCTTCATC
CTTTCCAGGGGGCACGGGGTTGCATCGTTATTTCGTCTTGCTTCTGGAGC
AGCACGGTGGTATTTTGGAGGAAGGTGCTGTCGATATACCGGATCGCCGC
CGAGGATTTCAGCTTCACGAATTTATGAAGGCACATGCCAGCCTTGAAGC
GGTGGGTGCCACATTCTTTTTGGGGCGACGCAAGGAGTAA
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Synonyms
Publications