NO21G02320.1, NO21G02320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02320.1
Unique NameNO21G02320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length632
Alignment locationchr21:698565..699673 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:698565..699673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02320.1 vs.
Match: EWM22738.1 (glutaredoxin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 236.1 bits (601), Expect = 8.600e-59
Identity = 128/177 (72.32%), Postives = 140/177 (79.10%), Query Frame = 0 
Query:   11 SSTLILLRLLLSLTTTTTITHAFFL----PSSPSPAPAPRPLPSLSLPSYPLAPLHAVPDGLLDEDGEPQYDAPTRARIENLIQENKIVLFMKGNRLFPSCGFSNTAIRILDQLNVEYETVDVLADERIRGEIKRYSAWPTIPQLYLQGEFVGGSDIILEMYQTGELQEMIEIAAAS 184
            S T  L  LL+     TT++HAF +    P   S A  P     LS P    + L AVP+GLL++DGEPQYDAP RA+IE LI+ NKIVLFMKG RLFPSCGFSNTAIRILDQLNVEYETVDVLADERIRGEIKRYSAWPTIPQLYLQG+F+GGSDIILEMYQTGELQEMIEIAAAS
Sbjct:   22 SRTASLFALLVLGPLATTLSHAFLIFHARPGPSSIARLPASALGLSTPFCLPSSLRAVPEGLLNDDGEPQYDAPARAKIEELIKNNKIVLFMKGTRLFPSCGFSNTAIRILDQLNVEYETVDVLADERIRGEIKRYSAWPTIPQLYLQGDFIGGSDIILEMYQTGELQEMIEIAAAS 198
The following BLAST results are available for this feature:
BLAST of NO21G02320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22738.18.600e-5972.32glutaredoxin-like protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02320NO21G02320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02320.1NO21G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02320.1.cds1NO21G02320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02320.1.cds2NO21G02320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02320.1.cds3NO21G02320.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02320.1.cds4NO21G02320.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02320.1 ID=NO21G02320.1|Name=NO21G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=632bp
ACAGACCGGAACGGTGCCCGCTAAGATCGATCACAAGCGAGCAAGCAAAG
CAATTATGCCTCGTCCGCGCCCTTCAGTCTTCATTTCCTCTACCTTGATC
CTCCTACGCCTGCTCTTATCCCTTACCACCACCACCACCATCACGCACGC
TTTCTTCCTCCCCTCCTCCCCTTCCCCAGCCCCTGCTCCCCGCCCCCTCC
CCTCCCTCTCCCTCCCTTCCTACCCCCTTGCCCCCCTCCATGCCGTTCCC
GATGGCCTCTTGGACGAAGACGGAGAGCCGCAATACGATGCCCCCACCCG
TGCTAGGATTGAAAATTTGATCCAAGAGAACAAAATCGTCCTGTTTATGA
AAGGCAATCGTTTGTTTCCGTCGTGCGGGTTTAGCAACACCGCCATCCGG
ATCTTGGATCAGTTGAATGTAGAATACGAGACAGTGGACGTGTTAGCCGA
CGAACGTATCCGTGGGGAGATTAAAAGGTACAGCGCCTGGCCCACCATCC
CCCAGCTATATCTTCAGGGAGAATTCGTCGGCGGATCAGACATCATCCTC
GAGATGTATCAGACAGGCGAGCTTCAAGAAATGATTGAGATCGCGGCAGC
TTCCTGAGGGAGGGAGGGAGGGGGAGAGGGAG
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protein sequence of NO21G02320.1

>NO21G02320.1-protein ID=NO21G02320.1-protein|Name=NO21G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MPRPRPSVFISSTLILLRLLLSLTTTTTITHAFFLPSSPSPAPAPRPLPS
LSLPSYPLAPLHAVPDGLLDEDGEPQYDAPTRARIENLIQENKIVLFMKG
NRLFPSCGFSNTAIRILDQLNVEYETVDVLADERIRGEIKRYSAWPTIPQ
LYLQGEFVGGSDIILEMYQTGELQEMIEIAAAS*
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mRNA from alignment at chr21:698565..699673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02320.1 ID=NO21G02320.1|Name=NO21G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1109bp|location=Sequence derived from alignment at chr21:698565..699673- (Nannochloropsis oceanica)
ACAGACCGGAACGGTGCCCGCTAAGATCGATCACAAGCGAGCAAGCAAAG
CAATTATGCCTCGTCCGCGCCCTTCAGTCTTCATTTCCTCTACCTTGATC
CTCCTACGCCTGCTCTTATCCCTTACCACCACCACCACCATCACGCACGC
TTTCTTCCTCCCCTCCTCCCCTTCCCCAGCCCCTGCTCCCCGCCCCCTCC
CCTCCCTCTCCCTCCCTTCCTACCCCCTTGCCCCCCTCCATGCCGTTCCC
GATGGCCTCTTGGACGAAGACGGAGAGCCGCAATACGATGCCCCCACCCG
TGCTAGGATTGAAAATTTGATCCAAGAGAACAAAATCGTCCTGTTTATGA
AAGGCAATCGTTTGTTTCCGTCGTGCGGGTTTAGCAACACCGCCATCCGG
ATCTTGGATCAGTTGAATGTAAGTGGAAAGAAGAGAGACGACCGGAGAGA
CGGTGGATTCATTGTAAAGTGTGCAGTTTGAGCCCCTCGGTGCGGCCTGC
TCACCCGTCTGTCTCTCCGTACTTATACTCCCAATTCCCTTGCGTGCATC
GCCCCTCACTTTCCCTCCCTCACTCCCTCCCTCCCTCAGGTAGAATACGA
GACAGTGGACGTGTTAGCCGACGAACGTATCCGTGGGGAGATTAAAAGGT
ACCTCTCTTCCTCCCTCCTTTTTTCCCTCCCTCCTTTCCTCTGACTCCAC
TGTCAAGTCAGACGGTTTCTAGAAGCGTGCACTCATCCTCACCGCCCCCC
CCCTCACTCCAGGTACAGCGCCTGGCCCACCATCCCCCAGCTATATCTTC
AGGGAGAATTCGTCGGTACGTCTGACTGTGTGCTCCCTCCCTCCCTCCCT
CCCCTCCTTCCCCTCCTCTTTCCCTTCCCTCCCTCCCCCCTCCTTGAACT
CCTCCCTCCTCCTCCAGGCGGGTCAAACATTATTCTCAGAGCCCACCATC
CTCTTTCTCCCTCCTTTCCTCCTTAACTCCTTTCCTCCCTCCCTCCCCCT
TCCCCAGGCGGATCAGACATCATCCTCGAGATGTATCAGACAGGCGAGCT
TCAAGAAATGATTGAGATCGCGGCAGCTTCCTGAGGGAGGGAGGGAGGGG
GAGAGGGAG
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Coding sequence (CDS) from alignment at chr21:698565..699673-

>NO21G02320.1 ID=NO21G02320.1|Name=NO21G02320.1|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at chr21:698565..699673- (Nannochloropsis oceanica)
ATGCCTCGTCCGCGCCCTTCAGTCTTCATTTCCTCTACCTTGATCCTCCT
ACGCCTGCTCTTATCCCTTACCACCACCACCACCATCACGCACGCTTTCT
TCCTCCCCTCCTCCCCTTCCCCAGCCCCTGCTCCCCGCCCCCTCCCCTCC
CTCTCCCTCCCTTCCTACCCCCTTGCCCCCCTCCATGCCGTTCCCGATGG
CCTCTTGGACGAAGACGGAGAGCCGCAATACGATGCCCCCACCCGTGCTA
GGATTGAAAATTTGATCCAAGAGAACAAAATCGTCCTGTTTATGAAAGGC
AATCGTTTGTTTCCGTCGTGCGGGTTTAGCAACACCGCCATCCGGATCTT
GGATCAGTTGAATGTAGAATACGAGACAGTGGACGTGTTAGCCGACGAAC
GTATCCGTGGGGAGATTAAAAGGTACAGCGCCTGGCCCACCATCCCCCAG
CTATATCTTCAGGGAGAATTCGTCGGCGGATCAGACATCATCCTCGAGAT
GTATCAGACAGGCGAGCTTCAAGAAATGATTGAGATCGCGGCAGCTTCCT
GA
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Synonyms
Publications