NO21G02180.1, NO21G02180.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO21G02180.1
Unique Name	NO21G02180.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1050
Alignment location	chr21:643645..644944 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr21	genome	chr21:643645..644944 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO21G02180.1 vs.

BLAST of NO21G02180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO21G02180	NO21G02180	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO21G02180.1	NO21G02180.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO21G02180.1.cds1	NO21G02180.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G02180.1.cds2	NO21G02180.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr21:643645..644944+
coding sequence from alignment at chr21:643645..644944+

mRNA sequence

>NO21G02180.1 ID=NO21G02180.1|Name=NO21G02180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp
GGGAGGGAGAGTTTTCAATAGAAGACAGAGGTCGCTCCTTGGTACAAGCT
TTTTATTCTCATCCTGCTGCTTCTACTGCTGCTGCTGCTGAGTATGGTGG
TCGTAGTGGAGGGCTTACAACATCTCATTGCACGGAGTTCGATGGATCGG
TGTCGGTGTGTGGGGGCGTTAGGAAATGCTTCCTTACTTGCGCGACACTC
AAAGCCTTGCCTTGTGTGTTCTCACATCAATCCCTCACCTTCACCATATG
CATAGGCGACTACGTGCGACAGTACTCCCCCCCACCTTCGATCTATTTGT
TGGGTACAATACCAACCTGCACGGCACAAAAAAATGAAGCACGACTAGCT
GCAAGCAACCGAGGGAGGAGGTCACGACCCGGTATGCTCCGACTCCGCCC
GCTCCCATGCCTCGACCTCACCCTACGACTACGACGACCACCACCACTGA
CAGCTGCAGCATCATGGAGAAGAGCAACGGCTCAAATACATGCCAGGATG
TTTTTAGTTGTCGGTGGCTTGCGACGATGGCAACGGCATGAGGACGAGAT
GGCCATGCTGGAAGCGATCCAACGCCAAGAGGAAGAACAGCGACGAATGC
CTATCATCCGAGCCGGGGGGAAGGAGGAAGGGAAGAAGGGAGGGAAGGAG
AAGGAGGAGACGACGCCTTTGGTAGTGTGGGGGGAAGACGGGGAGCTGTG
TTTTGTGGAGCAAGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAAGAGG
AGGATGAGAAAGGGAAGGAAGGGAAAGAGAGAAAGAGGAAGTAGAAGAAA
TGAAAGGCGACCAAGGGATGACACTCCCGGTGATGGGGTTAGTCACAAAA
AGTGACTGGTTGAATGATTGAAGAGGATCAAATGAATCTTACAAATTGGA
CAGAGTCTGGATTAAGATGTGTTAGATGAAGACCAAAACTGGAGTGTGTT
CATACCGGCTTATAAGCAACAAAAAAGAAGACAAAAACGAACAAATTGAT
CGATCACTGAGACGAATTCTTACTTTCTTTCGCGTTCTCTTCCTCCCTCC

protein sequence of NO21G02180.1

>NO21G02180.1-protein ID=NO21G02180.1-protein|Name=NO21G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MLRLRPLPCLDLTLRLRRPPPLTAAASWRRATAQIHARMFLVVGGLRRWQ
RHEDEMAMLEAIQRQEEEQRRMPIIRAGGKEEGKKGGKEKEETTPLVVWG
EDGELCFVEQGGKEGGKEGGKEEDEKGKEGKERKRK*

mRNA from alignment at chr21:643645..644944+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO21G02180.1 ID=NO21G02180.1|Name=NO21G02180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1300bp|location=Sequence derived from alignment at chr21:643645..644944+ (Nannochloropsis oceanica)
GGGAGGGAGAGTTTTCAATAGAAGACAGAGGTCGCTCCTTGGTACAAGCT
TTTTATTCTCATCCTGCTGCTTCTACTGCTGCTGCTGCTGAGTATGGTGG
TCGTAGTGGAGGGCTTACAACATCTCATTGCACGGAGTTCGATGGATCGG
TGTCGGTGTGTGGGGGCGTTAGGAAATGCTTCCTTACTTGCGCGACACTC
AAAGCCTTGCCTTGTGTGTTCTCACATCAATCCCTCACCTTCACCATATG
CATAGGCGACTACGTGCGACAGTACTCCCCCCCACCTTCGATCTATTTGT
TGGGTACAATACCAACCTGCACGGCACAAAAAAATGAAGCACGACTAGCT
GCAAGCAACCGAGGGAGGAGGTCACGACCCGGTATGCTCCGACTCCGCCC
GCTCCCATGCCTCGACCTCACCCTACGACTACGACGACCACCACCACTGA
CAGCTGCAGCATCATGGAGAAGAGCAACGGCTCAAATACATGCCAGGATG
TTTTTAGTTGTCGGTGGCTTGCGACGATGGCAACGGCATGAGGTATGTGC
ATCTTGAACCCTTCCCTCCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCAC
CCTTCTCTTACACTCATCCGTCGTCCCTCCCATCAACACGAGACTTGGTC
TCCATTTATTATCGCGACAGGTATCAGTATATCTCAGTTACCACAGACAT
TTTTAGAGGCACGTTGGTAAAGGGTTTTTTTCACCCTCCCTCCCCCCCTC
CCTCCCTTCCTTCCTCCCTCCCTCCTTCGATCGATCCTGCAGGACGAGAT
GGCCATGCTGGAAGCGATCCAACGCCAAGAGGAAGAACAGCGACGAATGC
CTATCATCCGAGCCGGGGGGAAGGAGGAAGGGAAGAAGGGAGGGAAGGAG
AAGGAGGAGACGACGCCTTTGGTAGTGTGGGGGGAAGACGGGGAGCTGTG
TTTTGTGGAGCAAGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAAGAGG
AGGATGAGAAAGGGAAGGAAGGGAAAGAGAGAAAGAGGAAGTAGAAGAAA
TGAAAGGCGACCAAGGGATGACACTCCCGGTGATGGGGTTAGTCACAAAA
AGTGACTGGTTGAATGATTGAAGAGGATCAAATGAATCTTACAAATTGGA
CAGAGTCTGGATTAAGATGTGTTAGATGAAGACCAAAACTGGAGTGTGTT
CATACCGGCTTATAAGCAACAAAAAAGAAGACAAAAACGAACAAATTGAT
CGATCACTGAGACGAATTCTTACTTTCTTTCGCGTTCTCTTCCTCCCTCC

Coding sequence (CDS) from alignment at chr21:643645..644944+

>NO21G02180.1 ID=NO21G02180.1|Name=NO21G02180.1|organism=Nannochloropsis oceanica|type=CDS|length=411bp|location=Sequence derived from alignment at chr21:643645..644944+ (Nannochloropsis oceanica)
ATGCTCCGACTCCGCCCGCTCCCATGCCTCGACCTCACCCTACGACTACG
ACGACCACCACCACTGACAGCTGCAGCATCATGGAGAAGAGCAACGGCTC
AAATACATGCCAGGATGTTTTTAGTTGTCGGTGGCTTGCGACGATGGCAA
CGGCATGAGGACGAGATGGCCATGCTGGAAGCGATCCAACGCCAAGAGGA
AGAACAGCGACGAATGCCTATCATCCGAGCCGGGGGGAAGGAGGAAGGGA
AGAAGGGAGGGAAGGAGAAGGAGGAGACGACGCCTTTGGTAGTGTGGGGG
GAAGACGGGGAGCTGTGTTTTGTGGAGCAAGGAGGGAAGGAGGGAGGGAA
GGAGGGAGGGAAAGAGGAGGATGAGAAAGGGAAGGAAGGGAAAGAGAGAA
AGAGGAAGTAG

Synonyms

Publications