NO21G02150.1, NO21G02150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02150.1
Unique NameNO21G02150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1304
Alignment locationchr21:633134..634775 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:633134..634775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02150.1 vs.
Match: EWM22717.1 (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 377.5 bits (968), Expect = 2.900e-101
Identity = 193/220 (87.73%), Postives = 201/220 (91.36%), Query Frame = 0 
Query:    1 MKISFALAALLPCAAAFVAPAIPSVTSSTGTAAARGRTVMMAERSKSLPFLMKPKNLDGSMAGDVGFDPLGLSEINDVGVDLYWLREAELKHCRLGMMAAAGILFVEILGPAPGFPAGKSQMDVFWKVYAEKPSLIGASLAAIAILEVISGVATTQGRQNGDRAPGDYNFDPLGFGKDPAKFKDLQLKEVKNGRLAMIAAAGMILQGVSTHQGALENLSG 221
            MK  FALAALLPCAA FVAP      SS G A  RGRT MMAERSKSLPFLMKPKNLDGSMAGDVGFDPLGLSEIN+VG+DLYWLREAELKHCRLGMMAAAGILFVE +GPAPGFP+ KSQMD FW VYAEKPSL+GA+L AIAILEVISGVATTQGRQNGDRAPGDYNFDPLGFGKDPAKFKDLQLKEVKNGRLAMIAAAGMILQGVSTHQGAL+NL+G
Sbjct:    1 MKTVFALAALLPCAAGFVAPVAFPTASSAGKAV-RGRTTMMAERSKSLPFLMKPKNLDGSMAGDVGFDPLGLSEINEVGIDLYWLREAELKHCRLGMMAAAGILFVEAVGPAPGFPSTKSQMDAFWTVYAEKPSLVGAALVAIAILEVISGVATTQGRQNGDRAPGDYNFDPLGFGKDPAKFKDLQLKEVKNGRLAMIAAAGMILQGVSTHQGALQNLNG 219
The following BLAST results are available for this feature:
BLAST of NO21G02150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
1002003004005006007008009001000110012001300Expect = 2.90e-101 / Id = 87.73SequenceEWM22717.1
Match NameE-valueIdentityDescription
EWM22717.12.900e-10187.73light-harvesting protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02150NO21G02150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02150.1NO21G02150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02150.1.cds1NO21G02150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02150.1.cds2NO21G02150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02150.1 ID=NO21G02150.1|Name=NO21G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1304bp
CCATCACCAGACATAGCGGCTCCTGCTTTTGTTTTCCCTCCATAGTCCTA
GCGACCGGTAAAGCCTGCTCAAGTACCGTGTTTGTATGCTCAACTAGTTC
GTGGTCTGGGTACTTGCTTGCTTTCCTCGACCGCAGCCGCCTCCTTGTCG
GTTTGCCGCATTGTTTTTGTTCCGCGTCGATCCTGGTCCAAACGCGTGCC
GGCTGCCTTTTTCTGCTGCGGCCTTGGGACTAGCTCGCCTGCATGTCCTG
CCCATGGCTTTTGAGTGCACCACCCTCACAAGAATGCATGTATCAGCCTT
TTCATCTGTCCAAACTAGGTGGGCGCTGTTTTTCTCAACTGCACATCATA
CGATGGAGCCTCCCTCTCCCCACCCCCCAAAAGCAATCCCCGTGCACCCA
AAAAGCTCAAAGCACTCAGGACTCACAAAGACATACATCTACACATGATA
TATATATATATATATAAAACCTACAGCCCCCTTGTTCCACCACCATGAAG
ATCTCCTTCGCTCTCGCTGCCCTCCTCCCCTGCGCCGCTGCTTTCGTGGC
CCCCGCTATCCCCTCCGTCACCTCCAGCACCGGCACGGCCGCCGCCCGTG
GCCGCACAGTGATGATGGCCGAGCGTTCCAAGTCCCTCCCCTTCCTGATG
AAGCCCAAGAATTTGGACGGCTCCATGGCTGGTGATGTGGGGTTCGATCC
TCTCGGCTTGTCCGAGATCAACGACGTGGGCGTGGATTTGTACTGGCTGC
GTGAGGCGGAGCTGAAGCACTGCCGCCTGGGCATGATGGCAGCTGCTGGC
ATCCTCTTCGTGGAAATTCTGGGACCTGCCCCTGGTTTCCCGGCAGGCAA
GAGCCAGATGGACGTGTTCTGGAAGGTATACGCGGAGAAGCCCTCCCTAA
TCGGCGCGTCCTTGGCTGCAATTGCCATTTTGGAGGTTATTTCGGGGGTG
GCTACGACTCAAGGGCGACAGAACGGCGACCGTGCTCCTGGGGACTACAA
CTTTGACCCTCTTGGCTTCGGCAAGGATCCCGCGAAGTTTAAGGACTTGC
AGTTGAAGGAGGTTAAAAACGGCCGCCTCGCCATGATCGCCGCTGCCGGC
ATGATCCTCCAGGGCGTCTCCACCCACCAAGGGGCCCTTGAGAACTTGAG
TGGTTAAACCATCTGTGATTTATTTGTTCTTTTGAAGAATTACATGAAAA
ACCACCGATTTTCATTCAACGAGAACACCGTGAGTTAGGAAGGGAGAGTG
AGATTGAGAAGAAGAAAGAAACGAGAAACCAGCCGTTCACAGTTGTGGTG
TTGT
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protein sequence of NO21G02150.1

>NO21G02150.1-protein ID=NO21G02150.1-protein|Name=NO21G02150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MKISFALAALLPCAAAFVAPAIPSVTSSTGTAAARGRTVMMAERSKSLPF
LMKPKNLDGSMAGDVGFDPLGLSEINDVGVDLYWLREAELKHCRLGMMAA
AGILFVEILGPAPGFPAGKSQMDVFWKVYAEKPSLIGASLAAIAILEVIS
GVATTQGRQNGDRAPGDYNFDPLGFGKDPAKFKDLQLKEVKNGRLAMIAA
AGMILQGVSTHQGALENLSG*
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mRNA from alignment at chr21:633134..634775+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02150.1 ID=NO21G02150.1|Name=NO21G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1642bp|location=Sequence derived from alignment at chr21:633134..634775+ (Nannochloropsis oceanica)
CCATCACCAGACATAGCGGCTCCTGCTTTTGTTTTCCCTCCATAGTCCTA
GCGACCGGTAAAGCCTGCTCAAGTACCGTGTTTGTATGCTCAACTAGTTC
GTGGTCTGGGTACTTGCTTGCTTTCCTCGACCGCAGCCGCCTCCTTGTCG
GTTTGCCGCATTGTTTTTGTTCCGCGTCGATCCTGGTCCAAACGCGTGCC
GGCTGCCTTTTTCTGCTGCGGCCTTGGGACTAGCTCGCCTGCATGTCCTG
CCCATGGCTTTTGAGTGCACCACCCTCACAAGAATGCATGTATCAGCCTT
TTCATCTGTCCAAACTAGGTGGGCGCTGTTTTTCTCAACTGCACATCATA
CGATGGAGCCTCCCTCTCCCCACCCCCCAAAAGCAATCCCCGTGCACCCA
AAAAGCTCAAAGCACTCAGGACTCACAAAGACATACATCTACACATGATA
TATATATATATATATAAAACCTACAGCCCCCTTGTTCCACCACCATGAAG
ATCTCCTTCGCTCTCGCTGCCCTCCTCCCCTGCGCCGCTGCTTTCGTGGC
CCCCGCTATCCCCTCCGTCACCTCCAGCACCGGCACGGCCGCCGCCCGTG
GCCGCACAGTGATGATGGCCGAGCGTTCCAAGTCCCTCCCCTTCCTGATG
AAGCCCAAGAATTTGGACGGCTCCATGGCTGGTGATGTGGGGTTCGATCC
TCTCGGCTTGTCCGAGATCAACGACGTGGGCGTGGATTTGTACTGGCTGC
GTGAGGCGGAGCTGAAGCACTGCCGCCTGGGCATGATGGCAGCTGCTGGC
ATCCTCTTCGTGGAAATTCTGGGACCTGCCCCTGGTTTCCCGGCAGGCAA
GAGCCAGATGGACGTGTTCTGGAAGGTATACGCGGAGAAGCCCTCCCTAA
TCGGCGCGTCCTTGGCTGCAATTGCCATTTTGGAGGTTATTTCGGGGGTG
GCTACGACTCAAGGGCGACAGAACGGCGACCGTGCTCCTGGGGACTACAA
CTTTGACCCTCTTGGCTTCGGCAAGGATCCCGCGAAGTTTAAGGACTTGC
AGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GAAGGAAAGAAAGAAAGAAGGGAAGGAGGAAGGAAAGAAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGAAGGAAAGAAAGAAAGAAGGGAAGGAGGAAG
GAAAGAAGGGAAGGAGGAAAGGAGGGAAGGAGGGAAGGGTGTAGGCGCTT
GTGACCAAATGATTGTAAAAGGGTAATGTGTTCGGTTTTAAATGAAAACG
ACGCATTCTTCGCGCGCCAATCATACCTCTAAGTACACCGCGGTCTAATC
CTTCCTTTCTTCCCTCCCTCTCTACCTTTCGTCCCATTAGTTGAAGGAGG
TTAAAAACGGCCGCCTCGCCATGATCGCCGCTGCCGGCATGATCCTCCAG
GGCGTCTCCACCCACCAAGGGGCCCTTGAGAACTTGAGTGGTTAAACCAT
CTGTGATTTATTTGTTCTTTTGAAGAATTACATGAAAAACCACCGATTTT
CATTCAACGAGAACACCGTGAGTTAGGAAGGGAGAGTGAGATTGAGAAGA
AGAAAGAAACGAGAAACCAGCCGTTCACAGTTGTGGTGTTGT
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Coding sequence (CDS) from alignment at chr21:633134..634775+

>NO21G02150.1 ID=NO21G02150.1|Name=NO21G02150.1|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at chr21:633134..634775+ (Nannochloropsis oceanica)
ATGAAGATCTCCTTCGCTCTCGCTGCCCTCCTCCCCTGCGCCGCTGCTTT
CGTGGCCCCCGCTATCCCCTCCGTCACCTCCAGCACCGGCACGGCCGCCG
CCCGTGGCCGCACAGTGATGATGGCCGAGCGTTCCAAGTCCCTCCCCTTC
CTGATGAAGCCCAAGAATTTGGACGGCTCCATGGCTGGTGATGTGGGGTT
CGATCCTCTCGGCTTGTCCGAGATCAACGACGTGGGCGTGGATTTGTACT
GGCTGCGTGAGGCGGAGCTGAAGCACTGCCGCCTGGGCATGATGGCAGCT
GCTGGCATCCTCTTCGTGGAAATTCTGGGACCTGCCCCTGGTTTCCCGGC
AGGCAAGAGCCAGATGGACGTGTTCTGGAAGGTATACGCGGAGAAGCCCT
CCCTAATCGGCGCGTCCTTGGCTGCAATTGCCATTTTGGAGGTTATTTCG
GGGGTGGCTACGACTCAAGGGCGACAGAACGGCGACCGTGCTCCTGGGGA
CTACAACTTTGACCCTCTTGGCTTCGGCAAGGATCCCGCGAAGTTTAAGG
ACTTGCAGTTGAAGGAGGTTAAAAACGGCCGCCTCGCCATGATCGCCGCT
GCCGGCATGATCCTCCAGGGCGTCTCCACCCACCAAGGGGCCCTTGAGAA
CTTGAGTGGTTAA
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Synonyms
Publications