Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:606779..610172 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G02060.1 vs.
Match: XP_003081265.2 (RNA (C5-cytosine) methyltransferase [Ostreococcus tauri]; CEF99099.1 RNA (C5-cytosine) methyltransferase [Ostreococcus tauri])
HSP 1 Score: 185.3 bits (469), Expect = 7.700e-43
Identity = 148/408 (36.27%), Postives = 198/408 (48.53%), Query Frame = 0
Query: 405 TFDWPDEETQPAFALAARGSLPLWLSRQWGGQYGWQEAAALAAEANRPGPVTLRWNQMKGGKEEGKGDMWKSTEAQLENSSSSSTSSITVPTLPPSFPLLARLAQEGVQGAEPCRWSPVGVRLSRGRPPHG-LWGLAAWREGWFEVQDEGSQLVALATGVGRQGGKGGEHVLDICAGNGGKSLAMGSLMWGGRDGGREGKREGRLWVYDTHQSRLKHLEAGARRAGMGGLVRVLESEEALDALLSPETKKGAREEGKEEGRCDVVLVDAPCSSSGVLRRRPSLRWTLKPEDALVTLPAIQRALLTQAQAHVKVGGRLVYATCSLLKEENEEVVAWFLEQYGEGGKEGGKEGRFRALPWQGEEEAPLRAAAQAWRDRNGGEGKREELAPGTLQLLPHVHGTDGFYMARF 812
T +W T A ++ ++P+ L+ + YG EA LA N PGPV R A + S + RL Q+G++ A P R++ L G P +G ++G+ AWREGWFEVQDEGSQL+ A K GE VLD CAGNGGK+LA+ + M + G + V+D + RL HLEA A RAG +V ++ D L+P++ D VLVDAPCSS G LRR PSLR D L IQ +L +A A VK GGRLVYATCS+L EN EVV F ++ + + LP+ ++A + A+ + RDR E +R LLPH+HGTDGF++ARF
Sbjct: 188 TVEW---STDGAMKISELSAIPVPLAEMFVRDYGDDEALRLARAMNEPGPVMCR--------------------ANVARCSVEECAE--------------RLEQDGLKIA-PARFATHAFALVNGAPANGGIFGVNAWREGWFEVQDEGSQLIVAALEA-----KAGERVLDACAGNGGKTLAIAAEM-----------KFGEVCVFDIDRRRLAHLEANAERAGSRDMVTTVQGTSLQD--LAPQS-------------FDAVLVDAPCSSVGALRRTPSLRHM---HDDPNELAKIQLGILREAAALVKPGGRLVYATCSVLSFENHEVVRAFESEFAD---------IYEPLPF---DDAFIAASRE--RDR---EHER--------SLLPHLHGTDGFFIARF 498
The following BLAST results are available for this feature:
BLAST of NO21G02060.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 Expect = 7.70e-43 / Id = 36.27 Sequence XP_003081265.2
Match Name E-value Identity Description
XP_003081265.2 7.700e-43 36.27 RNA (C5-cytosine) methyltransferase [Ostreococcus ... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G02060.1 ID=NO21G02060.1|Name=NO21G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=3394bp back to top protein sequence of NO21G02060.1
>NO21G02060.1-protein ID=NO21G02060.1-protein|Name=NO21G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=816bp back to top mRNA from alignment at chr21:606779..610172-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02060.1 ID=NO21G02060.1|Name=NO21G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=3394bp|location=Sequence derived from alignment at chr21:606779..610172- (Nannochloropsis oceanica)ATGCCGCGGCCACCA
CCGTTACCACGACCACGACGACCTACAGTACAGGCCGCTTGGCATTGCAC
ACTATGCTCCTTTCTCCCCCCTCTCCTCCTCCTCCTCCTCCAGCCCGTCC
TCTATCAGGCCTACACACCCCACTCCGCCGTCGCCGCCGCCGCCGCCTCC
TCCTCCGCCTCAGCCTCAGCCTCCCCCATCACGCCCAGGAGACTTTCATT
GTCCTCCTCCAGCAGCAGCAGCTCCTCCAAATCCTCTACCCGCCTCGCTC
GTCTCTTACAGCGCCACCAGGGCAGCAGCAGCCGCAGCAGCAGCGGCACC
ACAGCTGGTACCGGTGCCCAACATTCGGCCACGACCCCTGCCGTAGCCCA
AACGCTGCGTGCACTCGCCTCCACACCCCAACAAGAGTGGGATCCGTCCT
CCTCCATCTCCTCCTCCTTCGCTCCTCTGAGAGGCGACGGAGAGAAGGAG
GTGGAGGGGGAGCTTGGGGAAGAGGAAGACGCCATGAGCTCCCTGTCCTT
GGGCCAGCTCGCCTTGCTGGACGAAGTATGCTTGGAGGTGCTCGAAGCTG
TTCTGGCGCCCGATGCTAGGACAGCCGAATGGCTGGTCCGCAAGGCCTTG
CAGAGGGATGGGAGGGAGCTGGGGAACAAGGGGAGGATGATGGTGGCGAG
ACGATGCCTGGGGGTGACGAGTTTGAAGGGCCGGTTGGAGTACATGGTGA
ACACCGCCCTGGTCACGGCGCACAAGAGGCAGGAAGAGGCAGTGGCGGCA
AGGAAAGCGGTGGTGGTAGGCACTGGCAAAATTAACAGCGATTTAAGCAG
CGTCACCACTAGTGGTAGCAGGGAAACCCTCCCTCCTCTCCCACCAGCCC
TGCCCCCCCTGCCCCTCTCCCTCCGGGGACAAGCTCGGCTCCTCCTCTGT
CTATACATCCTCCACTACGAGCATGCCCCCAGTCGAGCCGACGATTTGAA
ACGCGGCCTCATGGGCGGCAACCCCGCCCTCTTCTCCCTCCTCCTCTCCC
TCCCTCCTCCTGCCCCCTCCTTCGCCACCGCCACCACCCTCTCTTCAATG
CTCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACTACCACCACCAC
CACCTCCTCCTTCTCCCGCTCCTCTTTAACCGTGGATGGCAATACCACGT
CATCTCCTCCACAGCCCTCTCTCCCTCTCTCCCCCAGCGCTTTGGCCACA
TTTGACTGGCCGGACGAAGAGACTCAGCCGGCGTTCGCGCTGGCCGCCAG
GGGGTCTTTGCCCCTCTGGCTGTCCAGACAATGGGGAGGGCAGTACGGTT
GGCAAGAAGCCGCAGCTCTCGCCGCAGAGGCCAACAGGCCAGGACCGGTG
ACCCTGAGGTGGAATCAGATGAAAGGGGGGAAGGAGGAAGGGAAAGGGGA
CATGTGGAAGAGCACGGAGGCGCAGTTGGAAAACTCGTCGAGCAGCAGCA
CCAGCAGCATTACCGTTCCCACCCTCCCTCCGTCCTTCCCTCTCCTGGCC
CGTCTGGCGCAGGAGGGGGTGCAGGGGGCAGAGCCCTGCCGGTGGTCGCC
TGTGGGTGTGCGGTTGAGTAGAGGGAGGCCTCCCCATGGACTGTGGGGGC
TAGCAGCATGGAGGGAGGGATGGTTCGAAGTGCAGGACGAAGGATCGCAG
CTGGTGGCGTTGGCGACGGGGGTGGGGAGGCAGGGAGGGAAGGGAGGGGA
GCATGTGCTGGATATCTGTGCGGGGAATGGAGGAAAGAGCCTGGCAATGG
GGTCGTTGATGTGGGGGGGGAGGGATGGAGGGAGGGAGGGAAAGAGGGAA
GGAAGATTGTGGGTGTATGACACGCACCAGTCGAGATTGAAGCACTTGGA
GGCAGGAGCGAGGCGGGCGGGGATGGGGGGCTTGGTGCGGGTGCTAGAGA
GTGAGGAGGCGCTCGATGCGCTATTGTCTCCGGAAACAAAGAAAGGAGCC
AGGGAGGAAGGGAAGGAGGAAGGGCGGTGTGATGTCGTGTTGGTGGACGC
GCCGTGTTCATCCTCGGGTGTGTTGAGACGCCGCCCTTCCCTGCGGTGGA
CCCTTAAACCCGAGGATGCTCTCGTCACCCTCCCGGCCATCCAGCGTGCC
CTGCTGACGCAAGCGCAAGCTCATGTGAAGGTGGGAGGGAGGTTGGTCTA
TGCGACCTGCTCTCTGCTCAAGGAGGAGAACGAGGAGGTGGTGGCTTGGT
TCTTGGAACAGTACGGAGAGGGAGGGAAGGAGGGAGGGAAGGAAGGGCGC
TTTCGGGCGTTGCCTTGGCAGGGGGAGGAGGAGGCACCCTTGAGAGCGGC
GGCCCAGGCGTGGAGGGATCGAAACGGAGGAGAGGGAAAAAGGGAAGAGT
TGGCGCCGGGGACGTTGCAGTTGTTACCCCACGTGCATGGAACGGATGGG
TTTTATATGGCGAGGTTCGAAAGGTATCGTTGA back to top Coding sequence (CDS) from alignment at chr21:606779..610172-
>NO21G02060.1 ID=NO21G02060.1|Name=NO21G02060.1|organism=Nannochloropsis oceanica|type=CDS|length=2448bp|location=Sequence derived from alignment at chr21:606779..610172- (Nannochloropsis oceanica) back to top