NO21G01890.1, NO21G01890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01890.1
Unique NameNO21G01890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1843
Alignment locationchr21:562627..564988 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:562627..564988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01890.1 vs.
Match: XP_005854131.1 (pap fibrillin family protein [Nannochloropsis gaditana CCMP526]; EKU22229.1 pap fibrillin family protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 403.3 bits (1035), Expect = 7.000e-109
Identity = 207/263 (78.71%), Postives = 233/263 (88.59%), Query Frame = 0 
Query:   52 SSPAF---LLAAASDQPDWPSDSSDDNYADEVEQVT---DVVDATASKTTLMELQQELLLLLVGQNKGFSVSESDREDIEDTLRDLEAINPNPRPTESFSHGTSPLSGTWRLIYTDALDVLVLGLVPIAVIGKVYQNISPNGASIANVVELSQGASQLSFFPLLGKFGDSMARLRVEASSEVLSPSRLSLTFKSAGFEPITLFGMEVGKQLSLPKLDFPNSPNVGWIESTYVDDKIRIGRSPGGIGGKGSVFVFVREGGAGRW 309
            S+P F   L AAASD  DWPSDSSDD+Y D  +  +   DVVDATA  TT  ELQ +LLLLLVGQNKGFSVSES+REDI+DTLRDLEA+NP PRPTE+FS GTSPLSGTWRL+YTDALDVLVLGLVP+AVIGKV+QNISP+G SIANVVE+SQGASQLSFFPLLGK GDS ARLRVEA+SE+LSP+RLSLTF+SAGFEP+TLFGMEV +QL +PK+DF  SPNVGWIE+TYVD+KIRIGRSPGG+GG+GSVFVFVREGGAG W
Sbjct:   50 SAPVFTPPLFAAASDSSDWPSDSSDDDYTDRGDASSSGPDVVDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGWIETTYVDEKIRIGRSPGGLGGQGSVFVFVREGGAGMW 312
The following BLAST results are available for this feature:
BLAST of NO21G01890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800Expect = 7.00e-109 / Id = 78.71SequenceXP_005854131.1
Match NameE-valueIdentityDescription
XP_005854131.17.000e-10978.71pap fibrillin family protein [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01890NO21G01890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01890.1NO21G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01890.1.cds1NO21G01890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01890.1.cds2NO21G01890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01890.1.cds3NO21G01890.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01890.1.cds4NO21G01890.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01890.1 ID=NO21G01890.1|Name=NO21G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1843bp
GGCTAGGATGGGCGTCGCGGCCTGCTAGAGATAATCGTGCGTAAGGATGT
CAAACGTCTTAGAAATTGTTGTCTACGTGCTTGGATTCTGTCGTAAAGAG
CCAAAAATGCAGGTATGAGTGAAGCAAGAGAATAGCCTGCTCGACCCTCG
ACTTAATTGAACCAAGCTTGTGGTGATGCACTCTTGCTCGCTTTTTTAGA
CCCAATCTCATGTCCCACGCTGTCAACGACAGCCCACATCCTAATACAGG
CCATTATACATACCGTCGTCATGATAATGATGGGCATGCGCCGCGTTGGA
GTGCTTTTCGTATTGATTTTGGCCGCTGCGCACGCTTTTCTTTTATCCCC
CTCCAAGCCCGCGTCGTTGAGGGCTCGTCCAAGCGCATCTGTCTCGCTGC
ACCACCGCACAGTAGCACGGACTTCATCACCAGCTTTCCTCCTCGCCGCT
GCCAGTGATCAGCCTGACTGGCCAAGTGACAGCAGCGACGACAATTACGC
GGATGAAGTCGAGCAAGTGACCGACGTGGTAGACGCCACGGCCAGTAAAA
CCACTTTGATGGAACTCCAGCAAGAACTCCTCCTCCTCCTCGTCGGGCAA
AATAAAGGATTTTCCGTATCGGAGTCTGATAGGGAGGACATAGAGGACAC
GCTGCGTGACTTGGAAGCAATTAATCCCAACCCTCGTCCCACCGAGTCCT
TCTCCCACGGAACGTCGCCGCTTTCGGGAACGTGGAGACTTATCTATACA
GACGCCCTAGACGTCCTCGTCCTGGGCTTGGTTCCCATCGCCGTCATCGG
CAAGGTCTACCAAAACATCTCTCCCAACGGCGCAAGCATTGCCAACGTGG
TGGAGCTAAGCCAAGGCGCGAGTCAACTCTCCTTCTTTCCCCTACTAGGT
AAATTCGGAGATAGCATGGCACGACTCCGTGTGGAGGCCTCCTCGGAGGT
CCTCTCCCCTTCCAGGCTATCGCTCACATTCAAGAGCGCGGGGTTTGAGC
CCATAACGCTTTTCGGAATGGAGGTGGGAAAGCAGCTGTCACTGCCAAAG
CTGGACTTCCCAAACAGTCCCAACGTGGGGTGGATTGAAAGCACTTACGT
CGACGATAAAATCAGGATTGGCCGTTCGCCAGGGGGAATAGGCGGAAAGG
GGAGTGTGTTTGTGTTTGTCCGGGAGGGCGGGGCAGGACGGTGGGCGGAG
GGGAGGACAGCATGAGCTCTGTAACCTCCCCCCCCTTGGTCACTTGACGG
GTTATTGGGGCTTATGTCCTTGGAAATTACTTAGTGGGGTTGTTTAGGGT
GAGACACATGTAACATGGAACGGCTCAAAAGAAGAAATTATACCCGTGGT
TAACCTGAAGGAGGGGGAGCGTATGCGCCCGGCCCAAGTCGTGTGCCTCG
GACTTGACTGCCGTCCCGTCAAAGCCATTCGAGATTCGGCAGAAATAAGG
GAAGAATATGCAACAATGCAACGTTGGAAGGCTTACCCTCGTATGTTATC
CTGTGACGTGGCGGACTTGTGCACTGGTAAGTAGCATTTGTTCGCGGGTA
TAGGTTGTACGAGATAATTTTAGGATTGTAGGAAACTACAGAAAAATAAT
TACTCCGGATTTACCACCCAACTTGCACTTGTTGCTCGTGTTCCTTTGCT
GCTATCGATACAGGTATGCTTTAGAGACTTCAGCATAGGTGCTTGCACGT
CCACCTCCTTTCGCACACTGCCTTGTTGAAGGAATGGCTTGCGCCGAACG
ATAGTCCCTTGACTTCAACTCCTCAACCCCTCCCCTCTCTTCCCCCACGA
CAAGGCAAAAATCGTGTGAGAATCACTCAACCAAACTCTCGCA
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protein sequence of NO21G01890.1

>NO21G01890.1-protein ID=NO21G01890.1-protein|Name=NO21G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MIMMGMRRVGVLFVLILAAAHAFLLSPSKPASLRARPSASVSLHHRTVAR
TSSPAFLLAAASDQPDWPSDSSDDNYADEVEQVTDVVDATASKTTLMELQ
QELLLLLVGQNKGFSVSESDREDIEDTLRDLEAINPNPRPTESFSHGTSP
LSGTWRLIYTDALDVLVLGLVPIAVIGKVYQNISPNGASIANVVELSQGA
SQLSFFPLLGKFGDSMARLRVEASSEVLSPSRLSLTFKSAGFEPITLFGM
EVGKQLSLPKLDFPNSPNVGWIESTYVDDKIRIGRSPGGIGGKGSVFVFV
REGGAGRWAEGRTA*
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mRNA from alignment at chr21:562627..564988+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01890.1 ID=NO21G01890.1|Name=NO21G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2362bp|location=Sequence derived from alignment at chr21:562627..564988+ (Nannochloropsis oceanica)
GGCTAGGATGGGCGTCGCGGCCTGCTAGAGATAATCGTGCGTAAGGATGT
CAAACGTCTTAGAAATTGTTGTCTACGTGCTTGGATTCTGTCGTAAAGAG
CCAAAAATGCAGGTATGAGTGAAGCAAGAGAATAGCCTGCTCGACCCTCG
ACTTAATTGAACCAAGCTTGTGGTGATGCACTCTTGCTCGCTTTTTTAGA
CCCAATCTCATGTCCCACGCTGTCAACGACAGCCCACATCCTAATACAGG
CCATTATACATACCGTCGTCATGATAATGATGGGCATGCGCCGCGTTGGA
GTGCTTTTCGTATTGATTTTGGCCGCTGCGCACGCTTTTCTTTTATCCCC
CTCCAAGCCCGCGTCGTTGAGGGCTCGTCCAAGCGCATGTAAGCACTCGC
AAGGATGTACAACGTGTGCTTGTACATACTGGAATAAATATTCATAATTA
TTCTGTCTTTGGATGCTTGGCACATTTTCCTACAGTCTAAATTGCGACTA
TCGTTCACTCCCTTTCCTCTGCCCCACCCCATCCCACACACACCAGCTGT
CTCGCTGCACCACCGCACAGTAGCACGGACTTCATCACCAGCTTTCCTCC
TCGCCGCTGCCAGTGATCAGCCTGACTGGCCAAGTGACAGCAGCGACGAC
AATTACGCGGATGAAGTCGAGCAAGTGACCGACGTGGTAGACGCCACGGC
CAGTAAAACCACTTTGATGGAACTCCAGCAAGAACTCCTCCTCCTCCTCG
TCGGGCAAAATAAAGGATTTTCCGTATCGGAGTCTGATAGGGAGGACATA
GAGGACACGCTGCGTGACTTGGAAGCAATTAATCCCAACCCTCGTCCCAC
CGAGTCCTTCTCCCACGGAACGTCGCCGCTTTCGGGAACGTGGAGACTTA
TCTATACAGGTAAAAGGACAGGAAATAGGAAGAGAAAGGGAGGGGATCTA
GGGAACAAGGAAAAACTGAGGAAGAGTGTGAGTTAAAAGTATCATAAGCC
TGAGTAAAAGGTGTTTTTTTCAAGCTGGCCATTGGAACAGCATTCACACA
CTGCCTTCCAACCTCTCTTTCCTTGCCATCCTCATAGACGCCCTAGACGT
CCTCGTCCTGGGCTTGGTTCCCATCGCCGTCATCGGCAAGGTCTACCAAA
ACATCTCTCCCAACGGCGCAAGCATTGCCAACGTGGTGGAGCTAAGCCAA
GGCGCGAGTCAACTCTCCTTCTTTCCCCTACTAGGTAAATTCGGAGATAG
CATGGCACGACTCCGTGTGGAGGCCTCCTCGGAGGTCCTCTCCCCTTCCA
GGCTATCGCTCACATTCAAGAGCGCGGGGTTTGAGCCCATAACGCTTTTC
GGAATGGAGGTGGGAAAGCAGCTGTCACTGCCAAAGGTAAGGGAGGGAGG
GAGGGAGGAGAGCGAGGGGAGGGAGGGAGGAGCAGTTGGAGGAGGGACTA
AGGTAAGGGCGAAAGACATGTTAAAGAGTCAGGTGGTTGCCACATGAAAA
GCTTGCCTCAATAATATGTAACCCACTTGCGTCTCTTTTCGTTTTCCTTC
TATCCTCCCTCCATCTCAGCTGGACTTCCCAAACAGTCCCAACGTGGGGT
GGATTGAAAGCACTTACGTCGACGATAAAATCAGGATTGGCCGTTCGCCA
GGGGGAATAGGCGGAAAGGGGAGTGTGTTTGTGTTTGTCCGGGAGGGCGG
GGCAGGACGGTGGGCGGAGGGGAGGACAGCATGAGCTCTGTAACCTCCCC
CCCCTTGGTCACTTGACGGGTTATTGGGGCTTATGTCCTTGGAAATTACT
TAGTGGGGTTGTTTAGGGTGAGACACATGTAACATGGAACGGCTCAAAAG
AAGAAATTATACCCGTGGTTAACCTGAAGGAGGGGGAGCGTATGCGCCCG
GCCCAAGTCGTGTGCCTCGGACTTGACTGCCGTCCCGTCAAAGCCATTCG
AGATTCGGCAGAAATAAGGGAAGAATATGCAACAATGCAACGTTGGAAGG
CTTACCCTCGTATGTTATCCTGTGACGTGGCGGACTTGTGCACTGGTAAG
TAGCATTTGTTCGCGGGTATAGGTTGTACGAGATAATTTTAGGATTGTAG
GAAACTACAGAAAAATAATTACTCCGGATTTACCACCCAACTTGCACTTG
TTGCTCGTGTTCCTTTGCTGCTATCGATACAGGTATGCTTTAGAGACTTC
AGCATAGGTGCTTGCACGTCCACCTCCTTTCGCACACTGCCTTGTTGAAG
GAATGGCTTGCGCCGAACGATAGTCCCTTGACTTCAACTCCTCAACCCCT
CCCCTCTCTTCCCCCACGACAAGGCAAAAATCGTGTGAGAATCACTCAAC
CAAACTCTCGCA
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Coding sequence (CDS) from alignment at chr21:562627..564988+

>NO21G01890.1 ID=NO21G01890.1|Name=NO21G01890.1|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at chr21:562627..564988+ (Nannochloropsis oceanica)
ATGATAATGATGGGCATGCGCCGCGTTGGAGTGCTTTTCGTATTGATTTT
GGCCGCTGCGCACGCTTTTCTTTTATCCCCCTCCAAGCCCGCGTCGTTGA
GGGCTCGTCCAAGCGCATCTGTCTCGCTGCACCACCGCACAGTAGCACGG
ACTTCATCACCAGCTTTCCTCCTCGCCGCTGCCAGTGATCAGCCTGACTG
GCCAAGTGACAGCAGCGACGACAATTACGCGGATGAAGTCGAGCAAGTGA
CCGACGTGGTAGACGCCACGGCCAGTAAAACCACTTTGATGGAACTCCAG
CAAGAACTCCTCCTCCTCCTCGTCGGGCAAAATAAAGGATTTTCCGTATC
GGAGTCTGATAGGGAGGACATAGAGGACACGCTGCGTGACTTGGAAGCAA
TTAATCCCAACCCTCGTCCCACCGAGTCCTTCTCCCACGGAACGTCGCCG
CTTTCGGGAACGTGGAGACTTATCTATACAGACGCCCTAGACGTCCTCGT
CCTGGGCTTGGTTCCCATCGCCGTCATCGGCAAGGTCTACCAAAACATCT
CTCCCAACGGCGCAAGCATTGCCAACGTGGTGGAGCTAAGCCAAGGCGCG
AGTCAACTCTCCTTCTTTCCCCTACTAGGTAAATTCGGAGATAGCATGGC
ACGACTCCGTGTGGAGGCCTCCTCGGAGGTCCTCTCCCCTTCCAGGCTAT
CGCTCACATTCAAGAGCGCGGGGTTTGAGCCCATAACGCTTTTCGGAATG
GAGGTGGGAAAGCAGCTGTCACTGCCAAAGCTGGACTTCCCAAACAGTCC
CAACGTGGGGTGGATTGAAAGCACTTACGTCGACGATAAAATCAGGATTG
GCCGTTCGCCAGGGGGAATAGGCGGAAAGGGGAGTGTGTTTGTGTTTGTC
CGGGAGGGCGGGGCAGGACGGTGGGCGGAGGGGAGGACAGCATGA
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Synonyms
Publications