Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:542143..546941 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01840.1 vs.
Match: XP_005853754.1 (hypothetical protein NGA_0476201 [Nannochloropsis gaditana CCMP526]; EKU22606.1 hypothetical protein NGA_0476201 [Nannochloropsis gaditana CCMP526])
HSP 1 Score: 470.3 bits (1209), Expect = 1.800e-128
Identity = 272/522 (52.11%), Postives = 335/522 (64.18%), Query Frame = 0
Query: 17 RSTTCHNEQGEP-RDAEPSEGPTPRPKPEPRPSLLTPPPSS--SRSWRGRLASTILVLVAVGLVVAAFIPRPRHTAFSP-----PSEQSQVEIVS----VQAFDGDQIPSSTATSPPGSEAAEIATVLPGTKSSTTVTPGSPTTTTGSSTAAIKTKDLFTSTLLAGGLQSVQQEQQAGAPSASKGVCFASDMPELLEALDDDSGCSIINLVILA--DESNGENGN------DTPFIFENEVLVSSRVVIQGNSVVLPLLDCSSSIRCFRVLTGGYLELRYVRINQSNVGVLRPVRPLLEGITPTGMVKEYRGSSVYFEPDATGGRFLGVIFDDDQSDEFEQILEESLALTSNRIYGGFIFMAGGRLEFELCLFWDFEYMTPLDRIYVGGDVLVLAGEVSFIGCVWIYTTFFGLENGAGFNIALLGGVATYTLCEFAEINGFVGMNGVGQAFMVAGGVQVLTGCSLTYFSIAAFFSGTGEMTVFGGAIIAVGTSLVDAYGLLASFGAGMDYCVTAGLLVHIGS 519
RS C + P +D++ S + P P P L+ P S + +WR + ++VL+ + + VA + + A S P EQS I +Q G Q +T P S E + T + +P T +TKD +S LA QQ GA CF DM EL EAL DDS C++I LV + D +G+ + TPF+F +E+LVS RV+IQGNSV+LP LDCS SIRCFRV+ GGYLELRYVRINQS+ GVLRPV PL EG T TGMV+EYRGSSVYFEP ATGGRFLGV FDDDQSDE + I+E+S ALTS RIYGGF+FMAGGRL+FELCLF+DFE++TPLDRIY+GGDVLVLAGEVSF GCVW Y TF G ENGAGFN+A+LGGVA YT C+F E+NG + MNG GQ+F VAGGVQVLTG SLTY + FSGTGEM+V G I G L+D YG+LA++G G+DYC+ G++VH+ S
Sbjct: 5 RSRACTSSPEAPSKDSDASVQNSQHPPP-PTSKTLSEPESRKYAATWRRKRTLALIVLMGMAITVAVVLVKRFSGAESDIQSPGPGEQSSTAIPGLHDVIQNLSGGQAAIATDMPLPASTDDE---------TGVTFSKETPAILTTPKNLFSQTKDFLSSAPLAN--------QQKGAAVTPDAACFVGDMEELAEALADDSECTVITLVSTSSRDGVSGDGNSIPSAAAQTPFVFRDEILVSKRVIIQGNSVLLPFLDCSQSIRCFRVMDGGYLELRYVRINQSDKGVLRPVNPLYEGFTVTGMVREYRGSSVYFEPGATGGRFLGVYFDDDQSDETDWIVEQSFALTSFRIYGGFVFMAGGRLQFELCLFYDFEFVTPLDRIYLGGDVLVLAGEVSFTGCVWAYITFLGFENGAGFNVAMLGGVAIYTFCQFFELNGAIAMNGAGQSFFVAGGVQVLTGVSLTYQTAVGLFSGTGEMSVMAGVQIVTGLHLLDVYGVLAAYGTGLDYCLFEGVMVHLAS 508
The following BLAST results are available for this feature:
BLAST of NO21G01840.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 Expect = 1.80e-128 / Id = 52.11 Sequence XP_005853754.1
Match Name E-value Identity Description
XP_005853754.1 1.800e-128 52.11 hypothetical protein NGA_0476201 [Nannochloropsis ... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G01840.1 ID=NO21G01840.1|Name=NO21G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=4178bp back to top protein sequence of NO21G01840.1
>NO21G01840.1-protein ID=NO21G01840.1-protein|Name=NO21G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1254bp back to top mRNA from alignment at chr21:542143..546941-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01840.1 ID=NO21G01840.1|Name=NO21G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=4799bp|location=Sequence derived from alignment at chr21:542143..546941- (Nannochloropsis oceanica)AT
GCCACCGCCAGAAGCGGGTAACCCGGCGTGGCAGGCGGCGGGTCTCCGCA
GTACTACTTGCCATAATGAACAGGGAGAGCCTCGCGACGCTGAGCCTAGT
GAAGGTCCGACTCCTCGACCAAAACCAGAACCGCGACCGTCACTATTAAC
GCCACCACCAAGTTCTAGCAGGTCATGGCGGGGGAGGCTAGCCAGTACAA
TACTAGTCTTGGTAGCTGTCGGACTGGTCGTTGCCGCCTTTATTCCG GTA
AGTTTCGATCATGACAGCTTGGATAGTGATCTTCACTTCAAATGTTATGG
TTATGTAATCATTCACTGGACTTTGCCGCTGTCATCTTTAATCTATGTTA
AGGCAAAGCATGGGCGACTACACCAACCGCGACCCAGAACGCACAAATAG
GCCCCAAGCTCACGCCCTGAACGACGTGGGATCCTACCTCTCCCGATACA
CATGCACACAGAGACCACGCCACACCGCATTCTCGCCGCCATCCGAGCAG
TCACAAGTTGAAATAGTATCAGTACAAGCGTTTGATGGTGACCAGATTCC
CTCTTCAACAGCAACAAGCCCACCCGGATCAGAGGCGGCAGAGATCGCAA
CTGTCCTACCCGGGACGAAGAGCTCGACGACCGTAACTCCGGGCTCGCCG
ACTACCACCACGGGCTCGTCGACTGCTGCGATCAAAACCAAGGACCTTTT
CACCTCCACGCTCCTGGCAGGGGGCCTCCAAAGTGTCCAGCAGGAACAGC
AGGCAGGAGCACCATCGGCGTCTAAGGGAGTATGCTTCGCGAGCGACATG
CCCGAGCTTCTGGAGGCCCTAGATGACGATTCGGGCTGTAGCATCATTAA
CTTGGTAATATTAGCGGATGAAAGCAACGGAGAGAACGGCAATGACACCC
CTTTTATTTTCGAAAACGAAGTACTAGTTTCGAGCCGGGTCGTAATTCAA
GGCAACAGTGTGGTGCTCCCGCTCTTGGACTGCAGCTCATCGATTCGATG
CTTTCGAGTCCTGACCGGTGGGTATCTGGAGCTGCGATATGTGCGAATCA
ATCAATCAAATGTTGGAGTGTTGCGTCCTGTGAGACCCCTTCTTGAGGGA
ATAACGCCCACGGGGATGGTAAAAGAGTACCGGGGGAGCAGTGTCTATTT
TGAACCAGATGCGACGGGCGGTCGATTCTTGGGCGTTATTTTCGACGATG
ATCAGAGCGATGAGTTTGAACAGATTCTGGAAGAGAGCTTGGCCTTAACG
AGTAATCGCATATACGGTGGCTTCATTTTTATGGCTGGTGGACGGTTGGA
ATTCGAATTGTGCTTGTTTTGGGATTTCGAATATATGACCCCCTTGGATC
GGATCTACGTGGGCGGGGACGTGTTGGTCTTGGCGGGAGAAGTGAGCTTC
ATTGGCTGTGTCTGGATTTATACAACCTTTTTTGGTCTTGAGAATGGTGC
GGGGTTCAACATCGCCTTGTTGGGCGGCGTGGCCACGTACACGCTTTGTG
AG GTACGTTTTGCTTTTGCTAGCCCTTAGCCTTTCAAACCGTTATCCTAG
CATGGCCGTTATCCTAGCATGGCACCCCACCTCCTTCCCCATTTCTTGTC
TCACAGTTCGCGGAAATCAATGGATTCGTGGGCATGAACGGCGTCGGACA
GGCCTTCATGGTCGCTGGAGGGGTTCAAGTCCTCACGGGCTGCTCCCTTA
CCTATTTTAGTATTGCCGCATTTTTCAGTGGGACCGGGGAAATGACTGTG
TTCGGGGGCGCAATTATTGCTGTGGGCACGAGCTTGGTTGATGCCTATGG
CTTGCTTGCGTCGTTTGGCGCGGGTATGGATTATTGTGTTACTGCGGGGT
TGCTGGTCCACATTGGCTCGACAGTCAAACAGTACTCCGGACCTTTGACG
ATGAATATGGTGGGGGGCTATAGCTTCTTGGGGACTGGGACGTATGTGGG
AATTGGCTCACCTGCTTTGGCCACAGTGACGACTATTCAGGAGTCAGGCA
CG GTGAGTACCAGGCAGAGAGGGGGGGGGGAGAGGGGAGTTTATTTCACT
TCCACATGCGTGTGCTTCGTCTGCGCATGTACTCGATCTTGACTTTTCTC
CTGCCATCCTCCTTCCCTCTTTCCTTTCCTCTCCCCACCCCCCTTCGTTT
CTAGGGCGGCACCTGGTACAATGCGGCGGGGGTCAGCACCTTCATTGGCT
GTAGCATCACTGAATTCACCGGCATCTCGGCTGCCAACATCTTGGGGGAA
TTTGCGGCGGTTAGTG GTAAGTGAATAGGGAGAAATAGATAAGAGGAAAA
GAGGCAGGGTATCTTGTGCTGAGCAGCGACTCCTGGACAAGTTTCACACG
TGACATCCTCTCCCTTTCTCCCTCCCCTCTTCCTTCCTTTCTTTCTTCCG
TTCTCTCTTCTTCCCAGCTGGTTTGCTCATCTGGATCGGGAGCCCCTTCA
TCGAGTACAGCGGCATAGAATATTTTAAAGGCCTGGGAGGAACCGCGTAC
GTCGGCACAGGAGCTGCTGTTTTCGGTTACTCCCCTCTCGTGGAGGCAAT
CGGTATAGTGAATCCGCACACCGACTTTTGGATTCAAGGGAGTTGTGAGT
CCTATGAGGGTGAATGGGCTAGTGGGCCATTGTTTTTCGTGACGGGGAGT
CCTCCGGGCAATTGTCAGGATCATGTGGCGACTCCTCCGCCGGAAAGGAG
GAGAGAAAGGGAGGTGGAGGAAGGAGCGAGGGAGGACGAGGAAGGAGCGG
TGGGGTTGTTGGGGATGGTGGGGGAGGAGAGAAGAGAGTTCTTCAATTCA
TTGTTTCGGAATAGTGCAAAGAATGAGATGAAAGGCGGGAGGAGGACGAG
GCATCTATCTTCATCCCTCTTTCCTTCTTCAAAAGGAGGAGAACGAGAGG
AAGAGAAGGATATAGGCATCTGGATCCATCACTCGAAGACTCGGCAGATG
AACTTCTCTGACTCCAAAATGAGACAGTTGATGGTCGAGGAATATCATGT
TCCCCCCTTAATCCTCCAAGCCGCCGAGGCTATGCAGTTGGCATTGCAGC
GAGGAGAGAAAAAGAGAGAAAGAGGGAAGACGGGAGGGGTGTATCTGTCT
TCTCCGCCTCAAGGGAGTTGTCGGGTGTGCGGGATTGAACACGTAGAGGG
GCCTGGGGCCAAGGCCTGTGTGGTGGAGGAGGAATGCAAGGAGGAGGGAT
GGGAATGGAGGATGCTGAGGCATGGGATGGAAGAGAAGGAAGAAGAGGAG
AAGGAAGAAGAGGACAATGAGTGGTTTTCAAACGCCTTTCCCTCCATGCC
TTCCTCGTCCTCATCCTCGACCTCATCGTTTGTGGAGTATACGGAGCAGT
TCATCATCCTTGGAGACGTGCACATAACCAGCAGCAGCTACCCTTCCTCG
CCCCCTCCCTCTTTCAATTCCTCTGCCTTGGTCGAAACCGCCTTCCGTCA
CGCCCTCCTCTCGCTCATTCCCTCCCTCGACGTTCGCCCGCAATCTCTCC
AAATTACAGTCTGGTCCGCCGAGCCCGATACGTTCTTCGTTCCCTCTCCC
CCTCCCTCCCTCTTATCTCCAACCATGTACAAGTTTATCGTCGTCGCCAC
CGACACAGACAACGCCACAGCCATCACAGATACCCTTTCCTTCTCCTCGT
CCTCCTTCTCCTCGTCCTCCCTCCCTCCCTCTCCCTCGTCCCCTCCCTCC
TTCCCCGAAGTCATTCTGGCTTTTATGCAGAAGAGAGGAAAGGAGGGAGG
GGAGAAAGGAGGGGTAGGACAGGTGGAAGTAGCAGTAGAGAAGACGATGC
ACATCCCGGCATATAATTCTAATGGGTTTCTTCAGCAGGAGCAGGCATGG
AAGGAGGGATGGATGAAGGGAGGGAAGGAAGGAGGACGTCGAATTACCGC
TTGGGCAGAGGAGGAAAATGGGGAGGAGGGAAGGGAGGATGAAGTTTTGT
TTTCCATTTCCTTGAGGGATCCTTCCCTCCCTGCCTTGCCTCTGACGCAT
CTCACGTATGACCATCCTTATTCCTTGCATCTGCGTGGCTTTTCTCCGTC
AGACTCAGTGAAACTGCAGCTGCTGCTAAGTGGTTGCGGAAGGGGGAGAG
AGGAGGTGGGGGAGGTGCGAGTGTTGGGTGAGGTTCTGATGGATGCCAGG
GGCCACGGCGGGGAGAAAAGGCAGACCGTGATCTTTGTCGAGGACAAGGA
AGGAGAAGGGAGGGAGGAAGAGGGCGAGGGCGTAATTGTTATGCAGGTGC
CTGCAGGAGACGTTTCTTTCGCGTTGCAGGCTGTGGATATTTTGACGGGA
GGGGTAGGCTTCTCGGCTTCGATGGTGGTCTCGAGGGAGGGGAGGAAGAG
GCGCTTGTATGGGCCGTTGGTGGAGTATTAA back to top Coding sequence (CDS) from alignment at chr21:542143..546941-
>NO21G01840.1 ID=NO21G01840.1|Name=NO21G01840.1|organism=Nannochloropsis oceanica|type=CDS|length=3762bp|location=Sequence derived from alignment at chr21:542143..546941- (Nannochloropsis oceanica) back to top