Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:511786..515648 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01710.1 vs.
Match: EWM22655.1 (Ovarian tumor, otubain [Nannochloropsis gaditana])
HSP 1 Score: 1158.7 bits (2996), Expect = 0.000e+0
Identity = 691/1232 (56.09%), Postives = 830/1232 (67.37%), Query Frame = 0
Query: 1 MTLSYSDLVLGLCVNADTYDDGECGGSAVNNRCHG-SGGADQPPCPRETADAAVATTAVATTQWESQPRLPD-----DAETQPGEDGLDSGGEQHQQPFPAEALGRFDFRVKPTNFAPGFKTVRSTVLMDWDEIKLWYQGQTLLKEIERREYVVKGLRWTPFEPRPPAGEPVVRHPTEPLDEEEGQSLRVLRDYGANLRPVWVDGDGSCLVHAVSTALTGSQLYYDALRWAAHKELRDHATFYQQAGFVTEQDKARFLPRLEAAAKEAAARELSDREKSMREAAIQMRDFDNSRTGRPKWTPAFLEEAVEKARPSEGEMRGPAQYLEEIHVAALANALRRPIMILAEGFQGGLFLPLRHDPEDCRLPASPPATTHEADQEKKETNTDDRRSSSSSRSSSSSSRGSSSRSGPAAPPIFVFLQYDHYIPLVHQDPRDFWDWAKGPDSGFAGDDAALEALRLYEAERGSINHRIPEFAEEILTMCVGVAAQKMEEVLSTYEVPPADREAYRQAFGRPECMEALPLKVVFEDQISIARCDKTVKNLKTMNALFRALGMEVSGEAEATSQNNVVYLSLHVHQVDFARYHRLVWALYYLMSCQYQSATATATPSL-TTTMTQVNSSGLFPPAAPTTPTASSSSSANSV-------KISKSSRSSGSTLSGSVISA--TVSNFPHTGQDQDASLLPQPLPLQGSSPIGAPLADIKSSSPPTLPRGVLPSAGNVDQSVFKFVLNYSQNDDLNLGLARLYCEPEGWDLRPMLSPARDPKDFLTHELARLEARFRRLTGLDYRRIMDEDVAATAQAGGSLGGLGGSGLLAPTDFRAKVPKALLALQSAIRTRPYPGRGTLQPSHIFLDQPDPELLSFCAV-GHNTGGLLRTSSRS--SSSSHNSSSSSSRSDSSNGDCDQMDVAGPAAAEGEGHSSRLISLGEVRLARVEGRRELLRHLLERGLPQNQQFEQAACAVLLPERFNEARARFCFSDWILNAANAGLPNVEVEQPPYAVVRTIRKVTVRPLPSPARVPALAALFPAVPDVGLNGQASDIAAGPLHEQYCQQQPLQQHHPSGLPSPTSSSTSVVSPRSPSPDSESVSTCFMLD------DQPHHHHEEEEDKDGEEERIH---PANLDPDNLLSASPAYKKVAWHAKLSDGTAIRTAHVREPGGSHSGGASSSSSGTPGSHAR----------------KMSSRGAGRGEASKDFVALGKRGISSP 1189
MTLSY DLVLGLCVNADT+DD EC +V R G Q C Q +S+ R + D G GG QPF EALGRFDFR+KPTNFAPGFKTVRST+LMDWD IKLWYQGQ LL+++ERREYV GLRW+PF P PPAGEPVVR P EPLDEEEGQ+LRVLRD G NLRPV VDGDGSCLVHAVSTALTGSQ+Y DALRWAAHKELRDHA FY+QAGFVT+QDKARFLPRL+ AA+EA AR DRE+SMR+AA +MR FDN +TGRPKWT AF+EEAVEKARPSEGE RGPAQYLEEIHVAALANA+RRPIMILAEGFQGGLFLPLRHDPEDCRL A ++ DRR +S ++ + + A PP+F+FLQY+HYIPLV QDPRDFW WA GP+SG GD+AALEALR+YE+ERG+ NHRIPEF EEILTMCVG+AAQ MEE+L+TY+VP DRE YRQAFG+PE M+ALPL VVFE+ + ARC+K+V+NLKTMNALFRALG+EV + + + +VV+LSL++H+VDF+RY LVWALYYLMSC++QS A++ L TTT T S A ++PTA + +S + + ISK + S + S SA T S TG+ A + LQ S P I ++ PRG+LPS+G++DQ VFKFVLNYSQNDDLNLGLARLYCE EGWDLR ML P+RDPKDFLT E+ARLE RF+RLTGLDYRR+MDED+ Q G ++G LGG A + RA+VPKAL LQ+AIRTRPYPGRG + SH+ L+QP+P+LLS+C + G +T + + + SS +S+SS+ SSN +QMDVA A EG G +S L+ L ++ L + RRELL+ LL RGLPQNQQFEQ ACAVLLPERFNEAR RFCF DWILNAA+AGLPNVE +Q P A R ++K+ VRPL SPA VP LAALF P + + A P + +QQ +Q PS SSS +SP PSP S S S +L D+ HH EEE+ I P+++ P S SPA+KKVAW KL DGT + TAHV+ GG G + + G ++++ K SS+ G + K+F LGKRGISSP
Sbjct: 1 MTLSYKDLVLGLCVNADTHDDAECTQQSVRTRDIALQGKGQQLVCINSPNSGMTPVIDDIAAQGDSRARQREQTGALDPLCTKGGGSQGCGGTD--QPFQVEALGRFDFRLKPTNFAPGFKTVRSTMLMDWDSIKLWYQGQNLLRDLERREYVAAGLRWSPFMPFPPAGEPVVRRPIEPLDEEEGQALRVLRDLGVNLRPVSVDGDGSCLVHAVSTALTGSQIYSDALRWAAHKELRDHAAFYRQAGFVTDQDKARFLPRLDKAAREARARGQDDRERSMRQAATEMRKFDNVKTGRPKWTAAFVEEAVEKARPSEGEARGPAQYLEEIHVAALANAVRRPIMILAEGFQGGLFLPLRHDPEDCRLLA---------------IHSPDRRDRTSGQTEDETWADAL-----AVPPVFIFLQYNHYIPLVQQDPRDFWTWAAGPESGLEGDEAALEALRMYESERGTANHRIPEFVEEILTMCVGIAAQGMEEMLATYQVPATDREMYRQAFGKPELMKALPLMVVFEE--TPARCEKSVRNLKTMNALFRALGLEVDDD-DLPTVRDVVFLSLYIHRVDFSRYRHLVWALYYLMSCEHQSVDASSLVDLATTTTTSPASPAPLAGTARSSPTARAFNSTSCIGRSKKLTSISKGDKKSHTFPSHVSFSAVTTDSILQDTGRIAAAPSMSHSTSLQQSYP------HIATAGIHVFPRGLLPSSGDLDQKVFKFVLNYSQNDDLNLGLARLYCEAEGWDLRLMLRPSRDPKDFLTKEMARLERRFQRLTGLDYRRVMDEDL---TQDGRTVGALGGVEATASAEPRARVPKALAVLQNAIRTRPYPGRGAVLSSHVLLEQPNPDLLSWCLLEGESTTTSVNSCDEGICNVSSASSTSSNGPFISSNAGSNQMDVA-RNAFEGGGLASFLLPLAQIFLQHTDARRELLKELLRRGLPQNQQFEQVACAVLLPERFNEARTRFCFLDWILNAADAGLPNVEKKQHPAAHHRAVKKIIVRPLTSPACVPPLAALFS--PQHAIRREQKPALAAPASSEQYRQQMVQPEPPSWSTVQDSSSLPPLSPPFPSPTSGSGSNLVVLKTYRPECDERHHGREEEKKLQQHCRPIQYHIPSDVHPSCTPSCSPAHKKVAWSVKLGDGTDVCTAHVQGNGGRKGIGRAVENIGIDATNSKSRREHLVQKPSKVLPGKTSSQTVGGIQQGKEFGVLGKRGISSP 1195
The following BLAST results are available for this feature:
BLAST of NO21G01710.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 Expect = 0.00e+0 / Id = 56.09 Sequence EWM22655.1
Match Name E-value Identity Description
EWM22655.1 0.000e+0 56.09 Ovarian tumor, otubain [Nannochloropsis gaditana] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G01710.1 ID=NO21G01710.1|Name=NO21G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=3570bp back to top protein sequence of NO21G01710.1
>NO21G01710.1-protein ID=NO21G01710.1-protein|Name=NO21G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1190bp back to top mRNA from alignment at chr21:511786..515648-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01710.1 ID=NO21G01710.1|Name=NO21G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=3863bp|location=Sequence derived from alignment at chr21:511786..515648- (Nannochloropsis oceanica)ATGACCCTATCCTACAGCGACCTCGTCCTTG GTAAGAACTCCTTTTATGC
GTGCGGTTTGGCGGGATGTGGAAAGGGGAGGCCGCATTGCCCAATCCAGT
GAAAACGTGTTAGCGTGTATTCCATTGGTGAACCTCGTACTCCCCACCTT
GATATGAAACCCTATTACACCGCGAGGGGACGCTTATTTGCATGCGGGTG
TTGACCCAGTTGTTGCTCACCATCAACTGATAATTGTGTTTTAAGGAAAG
CATAGCGTCATGTCACGCTCGACTGTGTGGGCTTAGTGCCTCCTATGAAC
TGACCACTTCTCCCTCTCCTATAGGTTTATGTGTCAATGCGGACACCTAC
GACGATGGGGAATGTGGGGGGTCTGCAGTAAACAATAGGTGTCACGGTAG
TGGTGGGGCGGATCAACCACCATGTCCCCGCGAGACTGCTGATGCTGCTG
TTGCGACCACTGCCGTCGCCACTACGCAATGGGAGTCGCAGCCCCGGCTG
CCCGATGATGCAGAGACTCAGCCGGGCGAAGACGGGTTGGATAGTGGTGG
GGAGCAACACCAGCAGCCCTTTCCAGCCGAGGCACTGGGCCGCTTCGACT
TTCGAGTGAAGCCCACGAACTTTGCGCCGGGCTTTAAGACAGTGCGCTCG
ACGGTGCTCATGGACTGGGACGAGATAAAGTTGTGGTATCAGGGCCAGAC
CCTGCTAAAGGAGATAGAGCGGCGTGAATACGTTGTGAAAGGCCTGCGGT
GGACTCCCTTCGAGCCCCGGCCTCCGGCCGGAGAGCCTGTCGTGCGGCAT
CCAACCGAACCTCTGGATGAGGAGGAGGGTCAGAGCCTGCGCGTATTGCG
GGATTATGGCGCGAACCTGCGGCCGGTGTGGGTGGATGGTGATGGCTCTT
GCTTGGTACATGCTGTGTCCACGGCGCTCACGGGCTCACAGCTCTACTAC
GATGCCCTCCGATGGGCCGCGCACAAGGAGCTCCGTGATCACGCCACCTT
CTACCAACAGGCTGGCTTCGTCACCGAGCAGGACAAGGCCCGTTTTTTGC
CACGTTTGGAGGCAGCGGCCAAAGAGGCGGCGGCTCGTGAGCTGAGTGAT
CGGGAGAAGAGCATGCGCGAGGCAGCGATACAGATGCGGGACTTCGACAA
TAGCAGGACTGGCCGTCCCAAGTGGACGCCCGCCTTTCTGGAAGAGGCGG
TGGAGAAGGCCCGGCCCTCAGAGGGCGAGATGCGCGGACCTGCCCAGTAT
CTGGAGGAGATTCACGTCGCAGCGCTAGCTAACGCCCTCCGTCGACCCAT
CATGATCTTGGCTGAGGGTTTCCAAGGAGGTCTTTTCCTGCCTCTGCGCC
ATGACCCTGAGGACTGCCGTTTGCCCGCTTCCCCACCGGCCACTACTCAT
GAGGCGGACCAGGAAAAAAAAGAGACAAATACCGACGATAGAAGAAGCAG
CAGCAGCAGCAGAAGCAGCAGTAGCAGCAGCAGGGGTAGCAGTAGCAGGA
GTGGGCCAGCCGCACCACCCATCTTTGTGTTTTTGCAGTACGACCACTAC
ATCCCGCTGGTGCACCAAGACCCGCGAGACTTTTGGGATTGGGCCAAAGG
GCCAGATTCGGGCTTCGCAGGCGATGACGCGGCACTGGAGGCCCTGAGGC
TGTACGAGGCGGAACGAGGCAGCATCAACCACCGCATCCCGGAGTTTGCG
GAGGAGATTCTAACCATGTGCGTTGGCGTGGCGGCCCAGAAAATGGAGGA
AGTGCTGAGCACATACGAGGTGCCGCCCGCGGACAGGGAAGCTTATCGTC
AGGCCTTTGGTCGGCCCGAGTGCATGGAGGCGCTGCCTTTGAAAGTGGTG
TTCGAGGATCAGATCTCAATTGCACGCTGTGACAAGACGGTCAAGAACCT
CAAGACCATGAATGCCCTCTTCCGCGCGCTGGGTATGGAGGTCAGCGGCG
AGGCGGAGGCCACCAGCCAAAACAACGTGGTATACCTCAGCCTGCATGTC
CACCAGGTCGACTTCGCACGCTATCATCGCCTTGTCTGGGCTCTCTACTA
TCTCATGAGCTGTCAGTATCAGTCGGCAACAGCGACAGCCACCCCATCAT
TGACCACGACCATGACTCAGGTCAATTCATCGGGCCTCTTTCCTCCTGCC
GCGCCTACAACCCCCACAGCGAGCAGTTCTAGTAGCGCTAATAGCGTTAA
GATTAGTAAAAGTAGCAGGAGTAGCGGCAGCACCCTCAGTGGCAGCGTCA
TTTCAGCCACCGTCAGCAACTTTCCGCATACGGGCCAAGACCAGGACGCC
TCGCTGCTGCCACAGCCATTACCATTGCAAGGGAGCAGCCCTATCGGCGC
ACCCCTTGCCGATATCAAATCTAGCTCGCCACCAACACTTCCCCGTGGAG
TGTTGCCCTCAGCTGGAAACGTAGACCAATCAGTTTTCAAGTTTGTGCTA
AACTACAGCCAGAACGACGACCTCAATCTCGGCCTGGCCCGCCTGTATTG
CGAGCCGGAGGGCTGGGATTTGCGGCCCATGCTCTCCCCTGCCCGCGACC
CAAAGGATTTTCTGACCCATGAGCTGGCACGATTGGAGGCCCGCTTCCGG
CGCCTGACGGGATTGGATTACCGGCGAATCATGGACGAGGACGTGGCCGC
CACGGCCCAGGCGGGGGGATCTCTGGGCGGGCTGGGTGGGTCGGGGCTCT
TAGCGCCGACAGATTTTCGCGCCAAGGTACCTAAAGCGCTGCTGGCACTT
CAGAGCGCAATCCGCACGCGTCCATATCCCGGGCGGGGTACCCTCCAGCC
GTCCCATATCTTTTTGGACCAACCAGATCCCGAGCTACTCTCCTTCTGCG
CCGTCGGCCATAACACAGGCGGCCTCCTCCGCACGAGCAGCAGGAGTAGT
AGTAGTAGTCATAATAGTAGCAGTAGCAGCAGCAGAAGTGATAGCAGCAA
TGGAGATTGCGACCAAATGGACGTGGCTGGCCCTGCGGCAGCTGAGGGGG
AAGGGCATTCATCTCGACTCATTTCGCTTGGCGAAGTCCGTCTGGCACGT
GTCGAGGGGCGGCGAGAGCTGCTTCGACATCTGCTAGAGCGAGGTCTACC
ACAAAATCAGCAGTTTGAACAAGCAGCGTGCGCTGTGCTCTTGCCCGAGC
GCTTTAACGAGGCGCGTGCCCGTTTCTGCTTTTCTGACTGGATCTTGAAC
GCGGCGAACGCAGGACTTCCTAATGTGGAAGTGGAGCAGCCCCCTTATGC
CGTGGTTCGCACCATCCGGAAGGTCACCGTCCGGCCTTTGCCCTCCCCCG
CCCGAGTGCCGGCTCTCGCAGCCCTCTTCCCCGCGGTACCAGATGTTGGG
CTCAATGGGCAGGCATCAGACATCGCTGCAGGGCCGCTGCATGAGCAATA
CTGTCAGCAGCAGCCACTACAACAGCATCATCCATCCGGTTTGCCTTCCC
CGACTTCTTCCTCTACCTCGGTTGTCTCGCCCCGCTCGCCTTCCCCTGAT
TCAGAGAGTGTGAGCACTTGTTTCATGCTAGACGACCAACCACATCATCA
CCACGAAGAGGAAGAAGATAAGGATGGCGAAGAGGAGCGAATCCACCCTG
CCAACCTCGACCCAGACAATCTCCTCTCGGCCAGCCCTGCTTATAAGAAG
GTTGCCTGGCACGCCAAGCTGAGTGACGGAACGGCCATTCGCACAGCCCA
CGTTCGAGAACCAGGCGGTAGCCATAGCGGTGGGGCTAGCAGCAGTAGCA
GTGGCACTCCCGGCAGTCATGCGAGGAAGATGTCATCACGAGGCGCAGGA
CGAGGGGAAGCAAGCAAGGATTTTGTGGCATTGGGCAAGCGTGGCATTAG
CAGTCCGTTCTGA back to top Coding sequence (CDS) from alignment at chr21:511786..515648-
>NO21G01710.1 ID=NO21G01710.1|Name=NO21G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=3570bp|location=Sequence derived from alignment at chr21:511786..515648- (Nannochloropsis oceanica) back to top