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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr21 | genome | chr21:457524..461375 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01540.1 vs.
Match: EWM22644.1 (pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Nannochloropsis gaditana]) HSP 1 Score: 484.6 bits (1246), Expect = 4.100e-133 Identity = 240/317 (75.71%), Postives = 271/317 (85.49%), Query Frame = 0
Query: 136 SSSPLPLSRKYLASPYHFIAPTRIKRDAIVVGGGHNGLVAAAYLAKQGLDVLVLERRHVVGGAAVTEELVNGFKFSRASYLAGLLRPQIITDLALEKHGFKYLPRDPSSFTPTGEVGKYLMLGSNEEKNWQSIAQFSLRDADAFIEYERFLGQARELIEPLLDSSPPNPWDGQAKWSERKHTFATLGKLLRLGWKSRGRLVSFYELFTAPATNLLDRWFESEVVKATLATDAVIGAMVGPKSPGSAYVLLHHVMGEAAGRKGVWAYVEGGMGAVSHSIAKAAKAWGAEIVTSAQVQQFVYSEGLGRVTGVEMACGTR 453
S+ P S KY SP+ FIAP R KRDAI+VGGGHNGLVAAAYLAKQGLDVLVLERR ++GGAAVTEE+V+GFKFSRASYLAGLLRPQIIT+L LEKHGFKYLPRDPSSFTPT G++L+LGS+EE+NWQSIAQFS RDADAF+EYE FLG+AREL+EPLLD PPNP+D AKW ER+HT TL LL GWK R L+ FYELFTAPA +LLDRWFES+++KATLATDAVIGAM+GP+ GSAYVLLHHVMGEAAGRKGVWAYVEGGMGA+S SIA+AAKAWGAE+VTSA V + VY + R+ GVEM GTR
Sbjct: 34 STLPPSHSPKYETSPFPFIAPVRRKRDAIIVGGGHNGLVAAAYLAKQGLDVLVLERRTLLGGAAVTEEIVHGFKFSRASYLAGLLRPQIITELGLEKHGFKYLPRDPSSFTPTNVAGRHLILGSSEEENWQSIAQFSTRDADAFVEYEDFLGKARELVEPLLDGGPPNPFDQAAKWKERRHTLQTLKTLLSAGWKHRQSLLPFYELFTAPAAHLLDRWFESDILKATLATDAVIGAMIGPRQAGSAYVLLHHVMGEAAGRKGVWAYVEGGMGAISKSIAEAAKAWGAEVVTSATVTRLVYDDAQKRIAGVEMQDGTR 350
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G01540.1 ID=NO21G01540.1|Name=NO21G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=3010bp ATGATGACAAGGAAGAGGAGGGAGGCAGCAGAGTGGATTGAGGCAACGCC ACAGCGGCCACGCCCACGCATGCCCTTTCCCCTATGCCTTTTAAGAGCTG TGTATGCAGAGCGAGAGAATGGAGTAGGACGTGCCCTTCCAGGCATCACA GGATCTCCCAGTACGCACATCAGTTTAGCCTTGCAAGGCATTGAGGCCCT AGAGCACACCATGCCATGGTCGGCAGGAGCAGAAACAGCAATCACTGCGA CGACCCATTTCATCCGCCGCTCTCGCATCCTCTCAACACCCTCTGTGCTC TCGACCACAAGATGCGGCTGCTGCGTTAGCTTCGCCTCCTCCTCCTCCTC CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGCCCTCATCTTCAT CTTCCTCTTCCTCCCCGCTTCCTCTCAGCCGCAAGTACCTTGCCTCCCCC TACCACTTCATCGCTCCTACCCGCATCAAACGCGACGCCATCGTCGTCGG TGGGGGCCACAACGGTCTAGTCGCCGCTGCCTACCTCGCAAAACAAGGTC TTGATGTCCTTGTCCTGGAACGTCGTCATGTGGTGGGCGGGGCAGCAGTC ACAGAGGAGCTGGTCAATGGATTCAAATTCAGCAGAGCTTCGTACCTGGC TGGGTTGCTCCGCCCTCAGATTATTACTGATCTAGCGCTTGAGAAACATG GCTTTAAATACCTACCAAGGGACCCTTCCTCGTTCACTCCTACAGGTGAA GTTGGAAAGTATTTGATGTTGGGGAGTAATGAGGAGAAGAACTGGCAATC CATCGCTCAATTTTCTCTGCGAGACGCTGATGCCTTCATCGAGTACGAAA GATTTCTGGGCCAAGCACGTGAGTTAATCGAGCCGTTGCTCGATTCCTCT CCTCCTAACCCATGGGATGGGCAAGCTAAGTGGAGCGAAAGGAAACATAC CTTCGCCACCCTCGGAAAGTTACTGAGGCTAGGATGGAAGAGTCGCGGAA GGCTCGTCTCTTTTTATGAGCTTTTCACGGCCCCGGCAACCAATTTGTTG GACCGATGGTTTGAGAGCGAGGTGGTTAAGGCGACGCTCGCGACAGATGC GGTTATCGGTGCGATGGTGGGGCCCAAATCGCCAGGATCCGCATATGTGC TGTTGCACCATGTCATGGGAGAGGCAGCGGGACGGAAGGGCGTGTGGGCT TATGTTGAAGGAGGGATGGGTGCCGTTAGTCACAGCATCGCCAAGGCAGC CAAGGCGTGGGGGGCAGAGATAGTGACCAGCGCGCAGGTGCAACAGTTTG TGTATAGTGAAGGGTTGGGGCGAGTGACGGGCGTGGAGATGGCGTGTGGG ACACGACTAGAAGCCTCTGTCACCCTCTCAAGCGGCACCCCTTACCACAC ATTTGTCGAGCTCTTCCCCCCTCCTCCCTCCCTCCCTCCTCCTCCTCGCC TCTGCCCCCGGCTTTCCTCCAGCGCATTCGCCACACTGACTACGCCTCCG GGGTCTTCAAAATTAATTTGGCATTGGAGCGCCTTCCTGACTTCACCTGC TGCCCCTCCTCTGCTTCGAACGAGGCAGGTCCCCAGCATCGGGGCACTAT CCACTTTGAAGAAAGAGTTCAAGAGATAGAAGATGCTTATTTGGAGGCTC ATGCCCACCGTCGTCCTAGCTCTCGACCAGTGATTGAGATGACGCTACCT TCCTCCTTGGACACCACATTAGCTCCACCGGGCAAGCATGTCGCATCGTT GTTCGTCCAGTATGCGCCCTATGACCTCGATCCGAAAGTGGGAAGCTGGG AGGATGAGGGATTCAAGAATGCATTCGCTGATCGTGTATTTAGAATTATC GACGAGAGGGCTCCACACTTTTCCTCGTCGATTTTGGGGAGAGATCTATT GTCACCTTTAGATCTGGAAAGAGTGTTTGGATTACGTGGAGGGAATATAT TTCATGGTAGCTTGGGCTTGCATCAATTGGCGTACGCGCGGCCGGGATAC CGCACTCCGCTGCCTGGTCTATATTTGTGTGGGGCAGGCACGCATCCCGG GGGAGGGGTGATGGGTGCTCCTGGTAGGAACTGTGCGCGTGTGGTTTTAA GTGACTTACAGCGATAATTTGAGGTGAGGTAGGATAAGGTATGGATGTTA AAAAACGAAAGAAAAGGTAAGAGGGTTTGTTGGAAAGAAAGGAACAAAAT CATAGAGAGCTTAGTATAGAGAGCCTGATGCCAAGAAGAACATCAGGACA ATGAGAGGCCTCTTCGGCCACCTCCAGAAGCATAGACGAAATGATCAAAC AGTTCATACGGTGTGAAAGAAAGGGGAGAGAGTCAGTATAGATTTACAAA AGGAATTGACCATTGCCGTAAGCATGTCCAAAGAAAGAGAAAGAATGAAG GTCTTCAAGTTCTTTTTTTCTGCCGCTCCTACACTCCTGTAGAACTATCT CATGCAACCTGACGTCCCAGTAGGACTTGCATACGAGGGGGGGCCTTCCA ACGAGAAATTGTTGCATATTCATCCCTTATTTCCTTGTCCGAGTTTTTCT AGCGACTTTGACAGGTTTTTTTATCAGGCAAAGTCCCCGGACGGCCCACA CAGGGCCAGGAGGAGGGGGGGAAGGAGGATAAAAGAGGAGGTCAGCGGGA AGGCTACACATAGAGTGTCCGCATATCTTGCCGCGGTTGACCAAACCGAA GATCATGGGGACGAGCTTACCCACGGACCATGCTCCTGTACACCCGCAGG ATGTTACGTGCCCCATTGCCGTCCCGGGACACGAACTGTTCACAGGTGTC ACACCAACAAAGTCCTCGGATGGCCCGCTCATGACCTCCTCCTCTGCCTC GTCCTCGTCCTCCTCCGCCTCCTCCTCCGTCTCCTCCGCCTCCGCCTCCT CCTCCTCCTCTGCTTCCACCGCCTCCGCCCCCTCCTCCTCCTCCTTCTCC TCCTTCACCTCCTTCTCCTTCTGCCTTTCCCTTCCTCCTCCTCCTCCTCC TCCACCTTCT back to topprotein sequence of NO21G01540.1 >NO21G01540.1-protein ID=NO21G01540.1-protein|Name=NO21G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp MMTRKRREAAEWIEATPQRPRPRMPFPLCLLRAVYAERENGVGRALPGIT GSPSTHISLALQGIEALEHTMPWSAGAETAITATTHFIRRSRILSTPSVL STTRCGCCVSFASSSSSSSSSSSSSSSSSPSSSSSSSSPLPLSRKYLASP YHFIAPTRIKRDAIVVGGGHNGLVAAAYLAKQGLDVLVLERRHVVGGAAV TEELVNGFKFSRASYLAGLLRPQIITDLALEKHGFKYLPRDPSSFTPTGE VGKYLMLGSNEEKNWQSIAQFSLRDADAFIEYERFLGQARELIEPLLDSS PPNPWDGQAKWSERKHTFATLGKLLRLGWKSRGRLVSFYELFTAPATNLL DRWFESEVVKATLATDAVIGAMVGPKSPGSAYVLLHHVMGEAAGRKGVWA YVEGGMGAVSHSIAKAAKAWGAEIVTSAQVQQFVYSEGLGRVTGVEMACG TRLEASVTLSSGTPYHTFVELFPPPPSLPPPPRLCPRLSSSAFATLTTPP GSSKLIWHWSAFLTSPAAPPLLRTRQVPSIGALSTLKKEFKR* back to topmRNA from alignment at chr21:457524..461375+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G01540.1 ID=NO21G01540.1|Name=NO21G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=3852bp|location=Sequence derived from alignment at chr21:457524..461375+ (Nannochloropsis oceanica) ATGATGACAAGGAAGAGGAGGGAGGCAGCAGAGTGGATTGAGGCAACGCC
ACAGCGGCCACGCCCACGCATGCCCTTTCCCCTATGCCTTTTAAGAGCTG
TGTATGCAGAGGTAAATGTGCCTTTGCTGTGTGAAGGGCATGAGGGTGAT
GCTCGAGCGGCAGCCCCCCCCATTCTTCTTTCTTGATCCCCTCCTCACCA
CACAGCGAGAGAATGGAGTAGGACGTGCCCTTCCAGGCATCACAGGATCT
CCCAGTACGCACATCAGTTTAGCCTTGCAAGGCATTGAGGCCCTAGAGGT
GAGTGCTACGCGTAGCGTGGATCAGCAGGAGGAAGAGAGGGATGACCAGG
GGAGCGATGGACGAGAGGCGGCGAGGGGTGGCTGTGGTTGGGCAGATTAT
GACCGGACGCGAACCCCGCGATGGCCAGCTTTTGATTGCCCTGCCTCACG
CACTGCATCGAAATCATGGCGGCTTCCTTTTTTCATTACATTCATCCAAT
CCACCCAACAGCACACCATGCCATGGTCGGCAGGAGCAGAAACAGCAATC
ACTGCGACGACCCATTTCATCCGCCGCTCTCGCATCCTCTCAACACCCTC
TGTGCTCTCGACCACAAGATGCGGCTGCTGCGTTAGCTTCGCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGCCCTCA
TCTTCATCTTCCTCTTCCTCCCCGCTTCCTCTCAGCCGCAAGTACCTTGC
CTCCCCCTACCACTTCATCGCTCCTACCCGCATCAAACGCGACGCCATCG
TCGTCGGTGGGGGCCACAACGGTCTAGTCGCCGCTGCCTACCTCGCAAAA
CAAGGTCTTGATGTCCTTGTCCTGGAACGTCGTCATGTGGTGGGCGGGGC
AGCAGTCACAGAGGAGCTGGTCAATGGATTCAAATTCAGCAGAGCTTCGT
ACCTGGCTGGGTTGCTCCGCCCTCAGATTATTACTGATCTAGCGCTTGAG
AAACATGGCTTTAAATACCTACCAAGGGACCCTTCCTCGTTCACTCCTAC
AGGTGAAGTTGGAAAGTATTTGATGTTGGGGAGTAATGAGGTAGGGCGTG
GAGGGAGAGTGGGCAAAAGGGACGGAAGGGTTAATTGTTAAGTCGTAATT
TTGCCCATGCCAATCTACTTACTTCTCACTGTCCCGGTCGTAGTAATTAT
TCCTCCTCTAAATGCTGCTCCTTACCTTTCTCCCTATCCCTCCCCCTCGC
CTCCTCCCATGCAGGAGAAGAACTGGCAATCCATCGCTCAATTTTCTCTG
CGAGACGCTGATGCCTTCATCGAGTACGAAAGATTTCTGGGCCAAGCACG
TGAGTTAATCGAGCCGTTGCTCGATTCCTCTCCTCCTAACCCATGGGATG
GGCAAGCTAAGTGGAGCGAAAGGAAACATACCTTCGCCACCCTCGGAAAG
TTACTGAGGCTAGGATGGAAGAGTCGCGGAAGGCTCGTCTCTTTTTATGA
GCTTTTCACGGCCCCGGCAACCAATTTGTTGGACCGATGGTTTGAGAGCG
AGGTGGTTAAGGCGACGCTCGCGACAGATGCGGTTATCGGTGCGATGGTG
GGGCCCAAATCGCCAGGATCCGCATATGTGCTGTTGCACCATGTCATGGG
TGAAGAGGGAGGGAGGAAGGGCGGGAGGGAAGGGCGCATACAAGACTCGA
AAATACCCTGCTATTAATTTGGAAATTATTCTCACTTACCCTAATTCGTG
TTTCATTCATTTCATTTCTTATTTGTTGTATGTGTTTATTTTTATGTTTT
ACATCCTTCATAATGCTCTTGTACTTCGCTTTTCCCTAATTCTTTGTTCA
CTATTGACACAGGAGAGGCAGCGGGACGGAAGGGCGTGTGGGCTTATGTT
GAAGGAGGGATGGGTGCCGTTAGTCACAGCATCGCCAAGGCAGCCAAGGC
GTGGGGGGCAGAGATAGTGACCAGCGCGCAGGTGCAACAGTTTGTGTATA
GTGAAGGGTTGGGGCGAGTGACGGGCGTGGAGATGGCGTGTGGGACACGG
TAAGCAAGGGACCAAGGGACCAAGGGACCAAGGGAGAGGAGAGGGAGAGT
GGCATATGTGTATGGTCACATTCACAATGGCAGTCTTCCCCCTCGCCATA
GCGATGACATTTGTTTATCAACCCTTTCTTCTCCCTCTCATACACAGACT
AGAAGCCTCTGTCACCCTCTCAAGCGGCACCCCTTACCACACATTTGTCG
AGCTCTTCCCCCCTCCTCCCTCCCTCCCTCCTCCTCCTCGCCTCTGCCCC
CGGCTTTCCTCCAGCGCATTCGCCACACTGACTACGCCTCCGGGGTCTTC
AAAATTAATTTGGCATTGGAGCGCCTTCCTGACTTCACCTGCTGCCCCTC
CTCTGCTTCGAACGAGGCAGGTCCCCAGCATCGGGGCACTATCCACTTTG
AAGAAAGAGTTCAAGAGATAGAAGATGCTTATTTGGAGGCTCATGCCCAC
CGTCGTCCTAGCTCTCGACCAGTGATTGAGATGACGCTACCTTCCTCCTT
GGACACCACATTAGCTCCACCGGGCAAGCATGTCGCATCGTTGTTCGTCC
AGTATGCGCCCTATGACCTCGATCCGAAAGTGGGAAGCTGGGAGGATGAG
GGATTCAAGAATGCATTCGCTGATCGTGTATTTAGAATTATCGACGAGAG
GGCTCCACACTTTTCCTCGTCGATTTTGGGGAGAGATCTATTGTCACCTT
TAGATCTGGAAAGAGTGTTTGGATTACGTGGAGGGAATATATTTCATGGT
AGCTTGGGCTTGCATCAATTGGCGTACGCGCGGCCGGGATACCGCACTCC
GCTGCCTGGTCTATATTTGTGTGGGGCAGGCACGCATCCCGGGGGAGGGG
TGATGGGTGCTCCTGGTAGGAACTGTGCGCGTGTGGTTTTAAGTGACTTA
CAGCGATAATTTGAGGTGAGGTAGGATAAGGTATGGATGTTAAAAAACGA
AAGAAAAGGTAAGAGGGTTTGTTGGAAAGAAAGGAACAAAATCATAGAGA
GCTTAGTATAGAGAGCCTGATGCCAAGAAGAACATCAGGACAATGAGAGG
CCTCTTCGGCCACCTCCAGAAGCATAGACGAAATGATCAAACAGTTCATA
CGGTGTGAAAGAAAGGGGAGAGAGTCAGTATAGATTTACAAAAGGAATTG
ACCATTGCCGTAAGCATGTCCAAAGAAAGAGAAAGAATGAAGGTCTTCAA
GTTCTTTTTTTCTGCCGCTCCTACACTCCTGTAGAACTATCTCATGCAAC
CTGACGTCCCAGTAGGACTTGCATACGAGGGGGGGCCTTCCAACGAGAAA
TTGTTGCATATTCATCCCTTATTTCCTTGTCCGAGTTTTTCTAGCGACTT
TGACAGGTTTTTTTATCAGGCAAAGTCCCCGGACGGCCCACACAGGGCCA
GGAGGAGGGGGGGAAGGAGGATAAAAGAGGAGGTCAGCGGGAAGGCTACA
CATAGAGTGTCCGCATATCTTGCCGCGGTTGACCAAACCGAAGATCATGG
GGACGAGCTTACCCACGGACCATGCTCCTGTACACCCGCAGGATGTTACG
TGCCCCATTGCCGTCCCGGGACACGAACTGTTCACAGGTGTCACACCAAC
AAAGTCCTCGGATGGCCCGCTCATGACCTCCTCCTCTGCCTCGTCCTCGT
CCTCCTCCGCCTCCTCCTCCGTCTCCTCCGCCTCCGCCTCCTCCTCCTCC
TCTGCTTCCACCGCCTCCGCCCCCTCCTCCTCCTCCTTCTCCTCCTTCAC
CTCCTTCTCCTTCTGCCTTTCCCTTCCTCCTCCTCCTCCTCCTCCACCTT
CT back to topCoding sequence (CDS) from alignment at chr21:457524..461375+ >NO21G01540.1 ID=NO21G01540.1|Name=NO21G01540.1|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at chr21:457524..461375+ (Nannochloropsis oceanica) ATGATGACAAGGAAGAGGAGGGAGGCAGCAGAGTGGATTGAGGCAACGCC ACAGCGGCCACGCCCACGCATGCCCTTTCCCCTATGCCTTTTAAGAGCTG TGTATGCAGAGCGAGAGAATGGAGTAGGACGTGCCCTTCCAGGCATCACA GGATCTCCCAGTACGCACATCAGTTTAGCCTTGCAAGGCATTGAGGCCCT AGAGCACACCATGCCATGGTCGGCAGGAGCAGAAACAGCAATCACTGCGA CGACCCATTTCATCCGCCGCTCTCGCATCCTCTCAACACCCTCTGTGCTC TCGACCACAAGATGCGGCTGCTGCGTTAGCTTCGCCTCCTCCTCCTCCTC CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGCCCTCATCTTCAT CTTCCTCTTCCTCCCCGCTTCCTCTCAGCCGCAAGTACCTTGCCTCCCCC TACCACTTCATCGCTCCTACCCGCATCAAACGCGACGCCATCGTCGTCGG TGGGGGCCACAACGGTCTAGTCGCCGCTGCCTACCTCGCAAAACAAGGTC TTGATGTCCTTGTCCTGGAACGTCGTCATGTGGTGGGCGGGGCAGCAGTC ACAGAGGAGCTGGTCAATGGATTCAAATTCAGCAGAGCTTCGTACCTGGC TGGGTTGCTCCGCCCTCAGATTATTACTGATCTAGCGCTTGAGAAACATG GCTTTAAATACCTACCAAGGGACCCTTCCTCGTTCACTCCTACAGGTGAA GTTGGAAAGTATTTGATGTTGGGGAGTAATGAGGAGAAGAACTGGCAATC CATCGCTCAATTTTCTCTGCGAGACGCTGATGCCTTCATCGAGTACGAAA GATTTCTGGGCCAAGCACGTGAGTTAATCGAGCCGTTGCTCGATTCCTCT CCTCCTAACCCATGGGATGGGCAAGCTAAGTGGAGCGAAAGGAAACATAC CTTCGCCACCCTCGGAAAGTTACTGAGGCTAGGATGGAAGAGTCGCGGAA GGCTCGTCTCTTTTTATGAGCTTTTCACGGCCCCGGCAACCAATTTGTTG GACCGATGGTTTGAGAGCGAGGTGGTTAAGGCGACGCTCGCGACAGATGC GGTTATCGGTGCGATGGTGGGGCCCAAATCGCCAGGATCCGCATATGTGC TGTTGCACCATGTCATGGGAGAGGCAGCGGGACGGAAGGGCGTGTGGGCT TATGTTGAAGGAGGGATGGGTGCCGTTAGTCACAGCATCGCCAAGGCAGC CAAGGCGTGGGGGGCAGAGATAGTGACCAGCGCGCAGGTGCAACAGTTTG TGTATAGTGAAGGGTTGGGGCGAGTGACGGGCGTGGAGATGGCGTGTGGG ACACGACTAGAAGCCTCTGTCACCCTCTCAAGCGGCACCCCTTACCACAC ATTTGTCGAGCTCTTCCCCCCTCCTCCCTCCCTCCCTCCTCCTCCTCGCC TCTGCCCCCGGCTTTCCTCCAGCGCATTCGCCACACTGACTACGCCTCCG GGGTCTTCAAAATTAATTTGGCATTGGAGCGCCTTCCTGACTTCACCTGC TGCCCCTCCTCTGCTTCGAACGAGGCAGGTCCCCAGCATCGGGGCACTAT CCACTTTGAAGAAAGAGTTCAAGAGATAG back to top
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