NO21G01360.1, NO21G01360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01360.1
Unique NameNO21G01360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2108
Alignment locationchr21:407333..409733 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:407333..409733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01360.1 vs.
Match: EWM22657.1 (CBF1-interacting co-repressor CIR, N-terminal domain protein [Nannochloropsis gaditana])

HSP 1 Score: 283.9 bits (725), Expect = 1.200e-72
Identity = 219/430 (50.93%), Postives = 272/430 (63.26%), Query Frame = 0 
Query:    1 MSLKFLAKKTWNPTNLKNVEKVWKAEQKAANEEKRMDEFRKQIAEERQLQELKELQVSAGLVDKDQIAKLDWMYEGPMATMADHQQDTEQYLLGKEVQVKKEESEVQRVESQPGMLFLNSVSAKNDMFTRLHEDPLLMIKQNEIRKRDDIVKNPIKMARIRQQLEEELARKKEKKQAKKDKKRAKKDAKRAGKHDKRRREERETDLALAAAEYLKKVGEGGKKSASSKKEDEEEELGGGSSRSDGSSGEGGGRGERNWREGGSGGDIKLKMEKENGYDRRKVSSNGGSTNRKKEEERRGKETEDRLAHQHRKRRRIDTRSRSRSPTFAP-GQHIKSHSRSLSRSRGRGSEGGRDRGRGGTHRRSPTPPRRREEREKRERD--RALEQGREEKGKRERVVSEKDRESRWMGEGEINRENEGRREGGKEKGK 428
            MSLKFLAKKTWNPTNLKNVEKVWKAEQKAANEEKRM EFRKQIAEERQLQELKELQVSAGLVDK+Q AKLDWMYEGPMATM DHQQDTEQYLLGKEV VK+++SEV+RVE+QPGML+LNSVSAKND+FTRLHEDPLL+IKQNE++KR+D+VKNP+KMARIRQQLE ELARKKEKK AK++KKRA+K+AK+A K  KR+++  ++    A A  L +  + GKK + +++ D      GGS+ S GS  E   R +R   +   GG                  SNG + N   +   R    +  +     K R  + R R       P  +  K+   S  R  G  +E           RRS     R +E+E+ ER+     E GR  + +      +K     +MG  E   E   R    +++ +
Sbjct:    1 MSLKFLAKKTWNPTNLKNVEKVWKAEQKAANEEKRMAEFRKQIAEERQLQELKELQVSAGLVDKNQTAKLDWMYEGPMATMQDHQQDTEQYLLGKEVTVKEQDSEVKRVENQPGMLYLNSVSAKNDLFTRLHEDPLLLIKQNELKKREDVVKNPVKMARIRQQLEAELARKKEKKNAKREKKRARKEAKKAKKEKKRQKDSMDS----AEAASLHREQDKGKKGSRAQESD------GGSTESSGSEAEAKERKQRYGLQTYGGG------------------SNGANGNASGDGRARALGPDPEVLAAKEKARLEEERERRERLRRKPLTEKEKAERLSAMRLDGIVNE---------EQRRSRVEKGRHQEKEEAEREAGTTAENGRGSRREDRPEFLQKLGVQVYMGGDETLEERMDRLRHTRQRNR 393
The following BLAST results are available for this feature:
BLAST of NO21G01360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400160018002000Expect = 1.20e-72 / Id = 50.93SequenceEWM22657.1
Match NameE-valueIdentityDescription
EWM22657.11.200e-7250.93CBF1-interacting co-repressor CIR, N-terminal doma... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01360NO21G01360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01360.1NO21G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01360.1.cds1NO21G01360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01360.1.cds2NO21G01360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01360.1 ID=NO21G01360.1|Name=NO21G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2108bp
ACAGCTACAGGACCATCTTACGCCAGACGTCTGCGTAGCCGGTCCCGTGT
CTTTCCGCTTAGCCGGGGCAAGCTATCTTGCACGCCTTCCCCTGGCAGCA
GCTTCATCGTATCCCCTGCAAACGCTTGTGGTTCAATTTTTCCCCCTCCT
CTGTTAACCCCGCCGCGGCACCCTAAGCTACCATGTCTCTCAAATTTTTG
GCCAAGAAGACATGGAACCCCACAAACCTCAAGAACGTCGAGAAAGTGTG
GAAAGCCGAGCAAAAAGCGGCCAACGAAGAGAAGCGTATGGATGAGTTTC
GGAAGCAAATCGCAGAGGAACGACAGCTACAAGAACTTAAAGAGCTGCAG
GTCTCCGCCGGGTTGGTAGATAAGGATCAGATAGCTAAGCTTGATTGGAT
GTATGAAGGACCCATGGCGACGATGGCTGACCACCAGCAGGATACCGAAC
AGTATTTACTGGGGAAGGAGGTGCAGGTCAAAAAGGAGGAGAGCGAGGTG
CAGCGTGTGGAGAGTCAGCCGGGGATGCTATTTCTCAACTCGGTGAGTGC
GAAGAACGATATGTTCACCCGCCTCCACGAAGACCCTCTTTTAATGATCA
AGCAAAACGAGATACGAAAGAGGGACGATATTGTGAAAAACCCCATCAAG
ATGGCTCGGATCCGGCAGCAGCTGGAGGAGGAACTGGCCCGGAAAAAAGA
GAAGAAACAGGCGAAAAAAGACAAAAAACGAGCCAAGAAAGATGCGAAGA
GGGCGGGAAAACACGACAAGAGACGGAGGGAAGAGAGGGAAACAGATTTA
GCATTAGCTGCAGCGGAATATCTCAAGAAGGTGGGTGAGGGGGGCAAAAA
AAGCGCCAGCAGCAAAAAGGAGGATGAGGAGGAGGAACTGGGTGGTGGGA
GTAGCAGGAGCGATGGGAGCAGTGGGGAGGGGGGAGGGAGGGGAGAAAGG
AATTGGAGAGAAGGGGGATCAGGAGGGGATATCAAGCTTAAGATGGAGAA
GGAAAATGGATACGACCGTCGGAAGGTCAGCAGCAACGGCGGCAGCACTA
ATAGAAAGAAGGAGGAGGAAAGAAGGGGGAAAGAAACGGAAGATCGTCTC
GCTCACCAGCACCGCAAGCGACGACGGATCGACACCCGCTCCCGATCTCG
CTCTCCTACTTTTGCACCTGGTCAACATATCAAAAGTCACAGTCGCAGTC
TCAGCCGCAGTCGAGGACGAGGATCGGAGGGAGGGAGGGATAGGGGGAGG
GGAGGAACACATCGTCGGTCACCTACCCCCCCGCGTCGTAGGGAGGAAAG
GGAGAAGAGGGAACGGGACCGGGCATTGGAGCAAGGGAGGGAGGAAAAAG
GAAAAAGAGAACGAGTAGTCTCAGAGAAGGACAGGGAGAGTAGGTGGATG
GGGGAGGGGGAGATAAATCGGGAGAACGAGGGACGGAGGGAAGGAGGGAA
GGAGAAGGGGAAAGAGCACCGGCCGCATCCGAATGAGTATCGACGCCGGC
ATGACAGCGACGATGACGAGGAGGGTGACGGGGAGGATTGGAGAGGGAAG
AAGAAGCACCGGTACGGGCTGCAGACAGCTGGGGGAAGCAGCAGCAGCAG
CAGTAGCAGTAGCAAAAGCAAGAAGGACGATGATGGCCGACCGAGGCATT
TGGGACCGGACCCTGCAGTGCTGGCGGCCAAGGAGAGGGAGCGATTGGAG
GAGGAGAGGCAGAAGAGAGAGGCTCGGCGGAAGCGGCCTTTAACAGAGGA
GGAGAAGAAACAACGCTTGTTAGCCATGCGGACTGATGGGAATGTGAATG
AGGAGCAGCGCCGGACAAGGGTGGAACAGGGCAAGGATAGGGAGAAGGAG
GAGACAGAGAAGGAGACGGGATTGACGGTGGAATCGCGCAGAGGGGGGGA
GGAGGAAGTGAAGCCGGAATTTTTGCAGAAAATGGGAGCACAGGTGTATA
TGGGGGGGGAGGAGACGTTGGTAGAGAGGATAGACAGGCTGAAGCACACG
CGGCAGCGGAACCGTGGGGGAGAGGCAGGGTTTTTGTAAGTGTGACAAAG
AGGAAAGACAAAGCTGAAGCAAGCGAAGAAATAAAATAATAATGAGCACG
GACCTTTG
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protein sequence of NO21G01360.1

>NO21G01360.1-protein ID=NO21G01360.1-protein|Name=NO21G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=619bp
MSLKFLAKKTWNPTNLKNVEKVWKAEQKAANEEKRMDEFRKQIAEERQLQ
ELKELQVSAGLVDKDQIAKLDWMYEGPMATMADHQQDTEQYLLGKEVQVK
KEESEVQRVESQPGMLFLNSVSAKNDMFTRLHEDPLLMIKQNEIRKRDDI
VKNPIKMARIRQQLEEELARKKEKKQAKKDKKRAKKDAKRAGKHDKRRRE
ERETDLALAAAEYLKKVGEGGKKSASSKKEDEEEELGGGSSRSDGSSGEG
GGRGERNWREGGSGGDIKLKMEKENGYDRRKVSSNGGSTNRKKEEERRGK
ETEDRLAHQHRKRRRIDTRSRSRSPTFAPGQHIKSHSRSLSRSRGRGSEG
GRDRGRGGTHRRSPTPPRRREEREKRERDRALEQGREEKGKRERVVSEKD
RESRWMGEGEINRENEGRREGGKEKGKEHRPHPNEYRRRHDSDDDEEGDG
EDWRGKKKHRYGLQTAGGSSSSSSSSSKSKKDDDGRPRHLGPDPAVLAAK
ERERLEEERQKREARRKRPLTEEEKKQRLLAMRTDGNVNEEQRRTRVEQG
KDREKEETEKETGLTVESRRGGEEEVKPEFLQKMGAQVYMGGEETLVERI
DRLKHTRQRNRGGEAGFL*
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mRNA from alignment at chr21:407333..409733-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01360.1 ID=NO21G01360.1|Name=NO21G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp|location=Sequence derived from alignment at chr21:407333..409733- (Nannochloropsis oceanica)
ACAGCTACAGGACCATCTTACGCCAGACGTCTGCGTAGCCGGTCCCGTGT
CTTTCCGCTTAGCCGGGGCAAGCTATCTTGCACGCCTTCCCCTGGCAGCA
GCTTCATCGTATCCCCTGCAAACGCTTGTGGTTCAATTTTTCCCCCTCCT
CTGTTAACCCCGCCGCGGCACCCTAAGCTACCATGTCTCTCAAATTTTTG
GCCAAGAAGGTACGTATGTATGTTCTGTCGAAAGAATGGCGATGGGACGG
GTGCCCGGTGCGTGATGGCGGGTAGCGGAGCTGGCTTCATTGTCCCCGCT
TTTTCGTTGCCATCTCAGAGGCACATCACCTTTCCCTTGGACTATGATTC
CTGGTCATGGATATGCCGACGACGGATAAAGAGGACAAATGCGCGAGGAC
AAATGAGCCTTAGTTCTTTCTGGGCATCCGCGCTGTCGTGGCCTCAGCCA
TTTCCTCAAACTCACAGATCCTCACTTGCTTTCCTTTCCCCCGCCCCCCT
AGACATGGAACCCCACAAACCTCAAGAACGTCGAGAAAGTGTGGAAAGCC
GAGCAAAAAGCGGCCAACGAAGAGAAGCGTATGGATGAGTTTCGGAAGCA
AATCGCAGAGGAACGACAGCTACAAGAACTTAAAGAGCTGCAGGTCTCCG
CCGGGTTGGTAGATAAGGATCAGATAGCTAAGCTTGATTGGATGTATGAA
GGACCCATGGCGACGATGGCTGACCACCAGCAGGATACCGAACAGTATTT
ACTGGGGAAGGAGGTGCAGGTCAAAAAGGAGGAGAGCGAGGTGCAGCGTG
TGGAGAGTCAGCCGGGGATGCTATTTCTCAACTCGGTGAGTGCGAAGAAC
GATATGTTCACCCGCCTCCACGAAGACCCTCTTTTAATGATCAAGCAAAA
CGAGATACGAAAGAGGGACGATATTGTGAAAAACCCCATCAAGATGGCTC
GGATCCGGCAGCAGCTGGAGGAGGAACTGGCCCGGAAAAAAGAGAAGAAA
CAGGCGAAAAAAGACAAAAAACGAGCCAAGAAAGATGCGAAGAGGGCGGG
AAAACACGACAAGAGACGGAGGGAAGAGAGGGAAACAGATTTAGCATTAG
CTGCAGCGGAATATCTCAAGAAGGTGGGTGAGGGGGGCAAAAAAAGCGCC
AGCAGCAAAAAGGAGGATGAGGAGGAGGAACTGGGTGGTGGGAGTAGCAG
GAGCGATGGGAGCAGTGGGGAGGGGGGAGGGAGGGGAGAAAGGAATTGGA
GAGAAGGGGGATCAGGAGGGGATATCAAGCTTAAGATGGAGAAGGAAAAT
GGATACGACCGTCGGAAGGTCAGCAGCAACGGCGGCAGCACTAATAGAAA
GAAGGAGGAGGAAAGAAGGGGGAAAGAAACGGAAGATCGTCTCGCTCACC
AGCACCGCAAGCGACGACGGATCGACACCCGCTCCCGATCTCGCTCTCCT
ACTTTTGCACCTGGTCAACATATCAAAAGTCACAGTCGCAGTCTCAGCCG
CAGTCGAGGACGAGGATCGGAGGGAGGGAGGGATAGGGGGAGGGGAGGAA
CACATCGTCGGTCACCTACCCCCCCGCGTCGTAGGGAGGAAAGGGAGAAG
AGGGAACGGGACCGGGCATTGGAGCAAGGGAGGGAGGAAAAAGGAAAAAG
AGAACGAGTAGTCTCAGAGAAGGACAGGGAGAGTAGGTGGATGGGGGAGG
GGGAGATAAATCGGGAGAACGAGGGACGGAGGGAAGGAGGGAAGGAGAAG
GGGAAAGAGCACCGGCCGCATCCGAATGAGTATCGACGCCGGCATGACAG
CGACGATGACGAGGAGGGTGACGGGGAGGATTGGAGAGGGAAGAAGAAGC
ACCGGTACGGGCTGCAGACAGCTGGGGGAAGCAGCAGCAGCAGCAGTAGC
AGTAGCAAAAGCAAGAAGGACGATGATGGCCGACCGAGGCATTTGGGACC
GGACCCTGCAGTGCTGGCGGCCAAGGAGAGGGAGCGATTGGAGGAGGAGA
GGCAGAAGAGAGAGGCTCGGCGGAAGCGGCCTTTAACAGAGGAGGAGAAG
AAACAACGCTTGTTAGCCATGCGGACTGATGGGAATGTGAATGAGGAGCA
GCGCCGGACAAGGGTGGAACAGGGCAAGGATAGGGAGAAGGAGGAGACAG
AGAAGGAGACGGGATTGACGGTGGAATCGCGCAGAGGGGGGGAGGAGGAA
GTGAAGCCGGAATTTTTGCAGAAAATGGGAGCACAGGTGTATATGGGGGG
GGAGGAGACGTTGGTAGAGAGGATAGACAGGCTGAAGCACACGCGGCAGC
GGAACCGTGGGGGAGAGGCAGGGTTTTTGTAAGTGTGACAAAGAGGAAAG
ACAAAGCTGAAGCAAGCGAAGAAATAAAATAATAATGAGCACGGACCTTT
G
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Coding sequence (CDS) from alignment at chr21:407333..409733-

>NO21G01360.1 ID=NO21G01360.1|Name=NO21G01360.1|organism=Nannochloropsis oceanica|type=CDS|length=1857bp|location=Sequence derived from alignment at chr21:407333..409733- (Nannochloropsis oceanica)
ATGTCTCTCAAATTTTTGGCCAAGAAGACATGGAACCCCACAAACCTCAA
GAACGTCGAGAAAGTGTGGAAAGCCGAGCAAAAAGCGGCCAACGAAGAGA
AGCGTATGGATGAGTTTCGGAAGCAAATCGCAGAGGAACGACAGCTACAA
GAACTTAAAGAGCTGCAGGTCTCCGCCGGGTTGGTAGATAAGGATCAGAT
AGCTAAGCTTGATTGGATGTATGAAGGACCCATGGCGACGATGGCTGACC
ACCAGCAGGATACCGAACAGTATTTACTGGGGAAGGAGGTGCAGGTCAAA
AAGGAGGAGAGCGAGGTGCAGCGTGTGGAGAGTCAGCCGGGGATGCTATT
TCTCAACTCGGTGAGTGCGAAGAACGATATGTTCACCCGCCTCCACGAAG
ACCCTCTTTTAATGATCAAGCAAAACGAGATACGAAAGAGGGACGATATT
GTGAAAAACCCCATCAAGATGGCTCGGATCCGGCAGCAGCTGGAGGAGGA
ACTGGCCCGGAAAAAAGAGAAGAAACAGGCGAAAAAAGACAAAAAACGAG
CCAAGAAAGATGCGAAGAGGGCGGGAAAACACGACAAGAGACGGAGGGAA
GAGAGGGAAACAGATTTAGCATTAGCTGCAGCGGAATATCTCAAGAAGGT
GGGTGAGGGGGGCAAAAAAAGCGCCAGCAGCAAAAAGGAGGATGAGGAGG
AGGAACTGGGTGGTGGGAGTAGCAGGAGCGATGGGAGCAGTGGGGAGGGG
GGAGGGAGGGGAGAAAGGAATTGGAGAGAAGGGGGATCAGGAGGGGATAT
CAAGCTTAAGATGGAGAAGGAAAATGGATACGACCGTCGGAAGGTCAGCA
GCAACGGCGGCAGCACTAATAGAAAGAAGGAGGAGGAAAGAAGGGGGAAA
GAAACGGAAGATCGTCTCGCTCACCAGCACCGCAAGCGACGACGGATCGA
CACCCGCTCCCGATCTCGCTCTCCTACTTTTGCACCTGGTCAACATATCA
AAAGTCACAGTCGCAGTCTCAGCCGCAGTCGAGGACGAGGATCGGAGGGA
GGGAGGGATAGGGGGAGGGGAGGAACACATCGTCGGTCACCTACCCCCCC
GCGTCGTAGGGAGGAAAGGGAGAAGAGGGAACGGGACCGGGCATTGGAGC
AAGGGAGGGAGGAAAAAGGAAAAAGAGAACGAGTAGTCTCAGAGAAGGAC
AGGGAGAGTAGGTGGATGGGGGAGGGGGAGATAAATCGGGAGAACGAGGG
ACGGAGGGAAGGAGGGAAGGAGAAGGGGAAAGAGCACCGGCCGCATCCGA
ATGAGTATCGACGCCGGCATGACAGCGACGATGACGAGGAGGGTGACGGG
GAGGATTGGAGAGGGAAGAAGAAGCACCGGTACGGGCTGCAGACAGCTGG
GGGAAGCAGCAGCAGCAGCAGTAGCAGTAGCAAAAGCAAGAAGGACGATG
ATGGCCGACCGAGGCATTTGGGACCGGACCCTGCAGTGCTGGCGGCCAAG
GAGAGGGAGCGATTGGAGGAGGAGAGGCAGAAGAGAGAGGCTCGGCGGAA
GCGGCCTTTAACAGAGGAGGAGAAGAAACAACGCTTGTTAGCCATGCGGA
CTGATGGGAATGTGAATGAGGAGCAGCGCCGGACAAGGGTGGAACAGGGC
AAGGATAGGGAGAAGGAGGAGACAGAGAAGGAGACGGGATTGACGGTGGA
ATCGCGCAGAGGGGGGGAGGAGGAAGTGAAGCCGGAATTTTTGCAGAAAA
TGGGAGCACAGGTGTATATGGGGGGGGAGGAGACGTTGGTAGAGAGGATA
GACAGGCTGAAGCACACGCGGCAGCGGAACCGTGGGGGAGAGGCAGGGTT
TTTGTAA
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Synonyms
Publications