NO21G01080.1, NO21G01080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01080.1
Unique NameNO21G01080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2062
Alignment locationchr21:339659..342206 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:339659..342206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01080.1 vs.
Match: XP_005852626.1 (hypothetical protein NGA_0541502 [Nannochloropsis gaditana CCMP526]; EKU23204.1 hypothetical protein NGA_0541502 [Nannochloropsis gaditana CCMP526]; EWM22612.1 Amino acid transporter, transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 757.7 bits (1955), Expect = 2.400e-215
Identity = 402/517 (77.76%), Postives = 450/517 (87.04%), Query Frame = 0 
Query:    1 MKTAAAATAFMLLRLAAAVRHSSSSYPYSASFGSRIRFPTTFLATVPSHSNAAFTTANKNHQQPRRVAVIRGGAAAG------VPVPASERGDGNKGSATSTATFNLIKNVLGAGVLSLPSGIGAFSKNPLAIIPAAALTMGLGSLSAYCFTLIARVCALNKVQTYGEAWKESVGEKTAWMVPAACTFKTFCACTAYSIIIGDSFSSLFGATPGFPAMLAKRTNVIAWMSAFVLLPLCMLKSFAPLAPFSLLGILGTMFTAGVLALRLFDGSYAPGGQFHEAIAANLRPALASGAGSPLFGPMMFVLVSMLSTSFIAHYNAPKFYTELEDRSIPKLNKVVQNSFNFCTAAFIFMMGCGFLTFGGASQGLILNNYAEKDVLAKLCRLAIGVSIVFGYPLTFVGIRDGVLDLMGKKNPSGRAQTITTLILLSITSTLAVFLRDVGFVVSFGGALLGSCIIYIFPALIFIRTMAAKIKSGEIVETQAVKREVLLNKGITVLGVVMAIIGASVSVLKTFVL 512
            MK  AAATA +LL  AA    S SS  Y++  G R  FP TFLATVPSH+  + T       Q RRVAVIRGGAA        VP   +E GDGNKGS+ STATFNLIKN+LGAGVLSLPSG+GAFS NP+A++PA ALTMG+GSLSAYCFTLIARVCALNKV+TYGEAW++SVG+KTAWMVPAACTFKTFCACTA+SIII DSFSSLFGATPGFPA+LA+RTNVI WM++ VLLPLCMLKSFAPLAPFSLLGILGT+FT  V+ALRL DGSYAPGGQFHEAIAA+LRP+L SG+ SPL  PM+FVLVSMLSTSFIAHYNAPKFYTELE+RSIPKLNKVVQNSFNFCTAAF F+MGCG+LTFGGASQGLILNNYAE+DVLAK+CRLAIG SIVFGYPLTFVGIRDGVL L+G+K PS R QT+TTL+LL++ STLAVFLRDVGFVVS GGALLGSCIIYIFPA+IFI+TMA K+ +GE+VET AVKREVLLNKGIT LGV++AIIGA+VSVLK F+L
Sbjct:    1 MKATAAATAMLLLPQAAL---SHSSPLYTSFSGPRAHFPATFLATVPSHT-LSNTKRPPILNQRRRVAVIRGGAAVTAEGSFQVPPAGTESGDGNKGSSVSTATFNLIKNILGAGVLSLPSGVGAFSSNPMALVPAVALTMGMGSLSAYCFTLIARVCALNKVETYGEAWEKSVGKKTAWMVPAACTFKTFCACTAFSIIIADSFSSLFGATPGFPALLAQRTNVIVWMTSLVLLPLCMLKSFAPLAPFSLLGILGTVFTGAVIALRLLDGSYAPGGQFHEAIAASLRPSLLSGSSSPLLSPMVFVLVSMLSTSFIAHYNAPKFYTELENRSIPKLNKVVQNSFNFCTAAFAFIMGCGYLTFGGASQGLILNNYAEQDVLAKMCRLAIGASIVFGYPLTFVGIRDGVLSLLGRKAPSTRTQTVTTLVLLAVVSTLAVFLRDVGFVVSLGGALLGSCIIYIFPAIIFIKTMAQKVATGEVVETPAVKREVLLNKGITALGVLLAIIGATVSVLKAFIL 513
The following BLAST results are available for this feature:
BLAST of NO21G01080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852626.12.400e-21577.76hypothetical protein NGA_0541502 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01080NO21G01080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01080.1NO21G01080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01080.1.cds1NO21G01080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01080.1.cds2NO21G01080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01080.1.cds3NO21G01080.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01080.1 ID=NO21G01080.1|Name=NO21G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2062bp
AAACCACAGAGCATCACGGGAACCGCCTTACCTCGGAGTACCCACCACCA
TGAAGACGGCAGCGGCAGCTACGGCGTTTATGCTGCTGCGCTTGGCGGCG
GCCGTGAGACATTCCTCATCCTCCTACCCCTACTCGGCCTCCTTTGGTTC
CCGCATCCGCTTCCCGACTACCTTCCTGGCCACAGTCCCCTCCCACAGTA
ACGCCGCCTTTACTACCGCCAATAAGAATCACCAACAACCGCGTCGCGTC
GCGGTCATCCGAGGCGGAGCCGCTGCTGGTGTGCCTGTGCCAGCCTCGGA
GCGCGGGGATGGGAACAAGGGCTCAGCCACTTCGACGGCTACCTTTAATT
TGATCAAGAATGTCCTCGGTGCAGGCGTTCTTTCCCTTCCTTCTGGCATC
GGGGCTTTCTCCAAGAACCCCCTCGCCATTATTCCTGCCGCTGCTCTTAC
CATGGGCTTGGGCTCCCTGTCCGCCTACTGTTTCACACTTATCGCTCGAG
TATGTGCGCTGAACAAGGTGCAGACATACGGCGAGGCGTGGAAGGAATCC
GTCGGCGAGAAGACTGCGTGGATGGTGCCAGCCGCTTGTACGTTTAAGAC
CTTCTGTGCCTGCACTGCGTACAGCATCATCATTGGTGATTCGTTTTCGT
CGTTGTTTGGTGCTACACCTGGTTTCCCGGCCATGTTAGCCAAGCGCACG
AACGTCATTGCGTGGATGTCCGCCTTTGTGCTGCTGCCTTTATGCATGCT
TAAGAGCTTTGCTCCCTTGGCGCCTTTTTCGCTCCTCGGGATCTTGGGAA
CCATGTTCACTGCTGGTGTGCTTGCTCTGCGTCTGTTCGACGGGTCTTAC
GCGCCGGGAGGACAGTTTCACGAGGCTATTGCTGCCAACCTTCGTCCAGC
CCTTGCTTCAGGGGCGGGTTCTCCCCTGTTCGGTCCGATGATGTTCGTGC
TTGTTTCAATGCTGTCCACGTCGTTTATTGCGCATTACAATGCCCCCAAG
TTCTACACGGAGTTGGAGGATCGCTCGATTCCCAAGCTCAACAAGGTGGT
GCAGAATTCTTTTAATTTTTGCACGGCCGCATTTATCTTTATGATGGGCT
GCGGGTTCTTGACCTTTGGTGGGGCGTCGCAGGGCTTGATTTTGAACAAC
TACGCCGAGAAGGACGTGCTTGCCAAGCTGTGTCGGTTGGCGATTGGGGT
GAGCATAGTCTTTGGTTACCCCTTGACGTTTGTGGGGATTCGCGACGGAG
TGTTGGACTTGATGGGGAAGAAGAATCCAAGCGGGAGAGCGCAGACAATC
ACCACGTTGATTTTGTTGTCTATCACCAGCACCTTGGCTGTGTTCTTAAG
AGATGTCGGGTTTGTTGTCTCGTTTGGTGGGGCGTTGTTAGGGAGTTGCA
TTATTTATATATTCCCGGCGTTGATTTTCATTAGGACCATGGCGGCCAAG
ATTAAGAGTGGGGAGATCGTGGAGACGCAGGCGGTGAAGAGGGAGGTGCT
TTTGAATAAGGGTATCACGGTTTTGGGGGTGGTGATGGCGATTATTGGCG
CGTCGGTGTCGGTGCTGAAGACGTTCGTGCTGAACAAGTAAGGAGACAGA
TAGATGGATTTCTCTGAGACATTTTTTTTTAAAGTTGTTGTTGTGCTTCC
CTGTCAGTGTGGGTGGGTGCGAGTCAGTATGCGTGCTAAATGTGTGGGAG
GAGCGGAGGGAGAGGGAGAAGGAGTAGGGAACAAATAGCTACACACCCGA
AAGGGGGGGGGGGGAAGGAGGTGGGGAAAGCGCAATGCACGTGCCCCCCT
CTTCAGCATTCTAGGTGGTGTGGGTCGGTGGACAAATGGGATAGGACAGA
TGGGGATAAGGAGGAGGAAAGAAGCAAAGGAGGGAAGGTACGACTGGGAG
CACAAATAAAAAATCAGTAGGAACGCTGGGGGAAAAGGGTGGAAAGCTCA
CTGTAAGTAGATACTCAATAGTTTGTGACGATGAACGACGGAGGAGAAAC
GAAGGAGAAGGGGAGGGAGTGGAGAAGAAGGTTTGAAAGGAGTACACACC
AACACATTTTGA
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protein sequence of NO21G01080.1

>NO21G01080.1-protein ID=NO21G01080.1-protein|Name=NO21G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp
MKTAAAATAFMLLRLAAAVRHSSSSYPYSASFGSRIRFPTTFLATVPSHS
NAAFTTANKNHQQPRRVAVIRGGAAAGVPVPASERGDGNKGSATSTATFN
LIKNVLGAGVLSLPSGIGAFSKNPLAIIPAAALTMGLGSLSAYCFTLIAR
VCALNKVQTYGEAWKESVGEKTAWMVPAACTFKTFCACTAYSIIIGDSFS
SLFGATPGFPAMLAKRTNVIAWMSAFVLLPLCMLKSFAPLAPFSLLGILG
TMFTAGVLALRLFDGSYAPGGQFHEAIAANLRPALASGAGSPLFGPMMFV
LVSMLSTSFIAHYNAPKFYTELEDRSIPKLNKVVQNSFNFCTAAFIFMMG
CGFLTFGGASQGLILNNYAEKDVLAKLCRLAIGVSIVFGYPLTFVGIRDG
VLDLMGKKNPSGRAQTITTLILLSITSTLAVFLRDVGFVVSFGGALLGSC
IIYIFPALIFIRTMAAKIKSGEIVETQAVKREVLLNKGITVLGVVMAIIG
ASVSVLKTFVLNK*
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mRNA from alignment at chr21:339659..342206+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01080.1 ID=NO21G01080.1|Name=NO21G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2548bp|location=Sequence derived from alignment at chr21:339659..342206+ (Nannochloropsis oceanica)
AAACCACAGAGCATCACGGGAACCGCCTTACCTCGGAGTACCCACCACCA
TGAAGACGGCAGCGGCAGCTACGGCGTTTATGCTGCTGCGCTTGGCGGCG
GCCGTGAGACATTCCTCATCCTCCTACCCCTACTCGGCCTCCTTTGGTTC
CCGCATCCGCTTCCCGACTACCTTCCTGGCCACAGTCCCCTCCCACAGTA
ACGCCGCCTTTACTACCGCCAATAAGAATCACCAACAACCGCGTCGCGTC
GCGGTCATCCGAGGCGGAGCCGCTGCTGGTGTGCCTGTGCCAGCCTCGGA
GCGCGGGGATGGGAACAAGGGCTCAGCCACTTCGACGGCTACCTTTAATT
TGAGTACGTTGGAGCTTAGACAACGAAGGGGAAATGGGGTCAGGTTAGAT
GGGCCGACATATGCCCTTTAGTTTCTATTTCTGTCTGCCGTGATTACGTG
CCCTCTCAATTTAAGTTTTGACGGGACTTGACTTGTTCATTAGGAGTGCA
CATTCGGGTAGCGTTTTTATGGCGCGTGCCGAAGCAGACAGACATGTGCC
ATACGCTAAACTCTTGATGTGCCATACGCTAAACTCTTGTCCTCACCTCT
CTCTACCTCTTTCCCTCCCCCGTCCCCCCTCCCCCTCCCTCAAAACAGTC
AAGAATGTCCTCGGTGCAGGCGTTCTTTCCCTTCCTTCTGGCATCGGGGC
TTTCTCCAAGAACCCCCTCGCCATTATTCCTGCCGCTGCTCTTACCATGG
GCTTGGGCTCCCTGTCCGCCTACTGTTTCACACTTATCGCTCGAGTATGT
GCGCTGAACAAGGTGCAGACATACGGGTATGTTTTCACTTTTCTTTGTCT
TGTTTCAATGATGGAGGGGACTCAATAAAATATTGAAACGGAAGAGGAAG
AACATGCAAGCACCAGCGTGATGATTCGTCTCGTCATCTCATGACTTCCA
GGAAAGCATGGTTTCTCAGTTGAGCCTTCCCTCAATTCCTACCCTTCCCC
ACCCCCCACACGCACAGCGAGGCGTGGAAGGAATCCGTCGGCGAGAAGAC
TGCGTGGATGGTGCCAGCCGCTTGTACGTTTAAGACCTTCTGTGCCTGCA
CTGCGTACAGCATCATCATTGGTGATTCGTTTTCGTCGTTGTTTGGTGCT
ACACCTGGTTTCCCGGCCATGTTAGCCAAGCGCACGAACGTCATTGCGTG
GATGTCCGCCTTTGTGCTGCTGCCTTTATGCATGCTTAAGAGCTTTGCTC
CCTTGGCGCCTTTTTCGCTCCTCGGGATCTTGGGAACCATGTTCACTGCT
GGTGTGCTTGCTCTGCGTCTGTTCGACGGGTCTTACGCGCCGGGAGGACA
GTTTCACGAGGCTATTGCTGCCAACCTTCGTCCAGCCCTTGCTTCAGGGG
CGGGTTCTCCCCTGTTCGGTCCGATGATGTTCGTGCTTGTTTCAATGCTG
TCCACGTCGTTTATTGCGCATTACAATGCCCCCAAGTTCTACACGGAGTT
GGAGGATCGCTCGATTCCCAAGCTCAACAAGGTGGTGCAGAATTCTTTTA
ATTTTTGCACGGCCGCATTTATCTTTATGATGGGCTGCGGGTTCTTGACC
TTTGGTGGGGCGTCGCAGGGCTTGATTTTGAACAACTACGCCGAGAAGGA
CGTGCTTGCCAAGCTGTGTCGGTTGGCGATTGGGGTGAGCATAGTCTTTG
GTTACCCCTTGACGTTTGTGGGGATTCGCGACGGAGTGTTGGACTTGATG
GGGAAGAAGAATCCAAGCGGGAGAGCGCAGACAATCACCACGTTGATTTT
GTTGTCTATCACCAGCACCTTGGCTGTGTTCTTAAGAGATGTCGGGTTTG
TTGTCTCGTTTGGTGGGGCGTTGTTAGGGAGTTGCATTATTTATATATTC
CCGGCGTTGATTTTCATTAGGACCATGGCGGCCAAGATTAAGAGTGGGGA
GATCGTGGAGACGCAGGCGGTGAAGAGGGAGGTGCTTTTGAATAAGGGTA
TCACGGTTTTGGGGGTGGTGATGGCGATTATTGGCGCGTCGGTGTCGGTG
CTGAAGACGTTCGTGCTGAACAAGTAAGGAGACAGATAGATGGATTTCTC
TGAGACATTTTTTTTTAAAGTTGTTGTTGTGCTTCCCTGTCAGTGTGGGT
GGGTGCGAGTCAGTATGCGTGCTAAATGTGTGGGAGGAGCGGAGGGAGAG
GGAGAAGGAGTAGGGAACAAATAGCTACACACCCGAAAGGGGGGGGGGGG
AAGGAGGTGGGGAAAGCGCAATGCACGTGCCCCCCTCTTCAGCATTCTAG
GTGGTGTGGGTCGGTGGACAAATGGGATAGGACAGATGGGGATAAGGAGG
AGGAAAGAAGCAAAGGAGGGAAGGTACGACTGGGAGCACAAATAAAAAAT
CAGTAGGAACGCTGGGGGAAAAGGGTGGAAAGCTCACTGTAAGTAGATAC
TCAATAGTTTGTGACGATGAACGACGGAGGAGAAACGAAGGAGAAGGGGA
GGGAGTGGAGAAGAAGGTTTGAAAGGAGTACACACCAACACATTTTGA
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Coding sequence (CDS) from alignment at chr21:339659..342206+

>NO21G01080.1 ID=NO21G01080.1|Name=NO21G01080.1|organism=Nannochloropsis oceanica|type=CDS|length=1542bp|location=Sequence derived from alignment at chr21:339659..342206+ (Nannochloropsis oceanica)
ATGAAGACGGCAGCGGCAGCTACGGCGTTTATGCTGCTGCGCTTGGCGGC
GGCCGTGAGACATTCCTCATCCTCCTACCCCTACTCGGCCTCCTTTGGTT
CCCGCATCCGCTTCCCGACTACCTTCCTGGCCACAGTCCCCTCCCACAGT
AACGCCGCCTTTACTACCGCCAATAAGAATCACCAACAACCGCGTCGCGT
CGCGGTCATCCGAGGCGGAGCCGCTGCTGGTGTGCCTGTGCCAGCCTCGG
AGCGCGGGGATGGGAACAAGGGCTCAGCCACTTCGACGGCTACCTTTAAT
TTGATCAAGAATGTCCTCGGTGCAGGCGTTCTTTCCCTTCCTTCTGGCAT
CGGGGCTTTCTCCAAGAACCCCCTCGCCATTATTCCTGCCGCTGCTCTTA
CCATGGGCTTGGGCTCCCTGTCCGCCTACTGTTTCACACTTATCGCTCGA
GTATGTGCGCTGAACAAGGTGCAGACATACGGCGAGGCGTGGAAGGAATC
CGTCGGCGAGAAGACTGCGTGGATGGTGCCAGCCGCTTGTACGTTTAAGA
CCTTCTGTGCCTGCACTGCGTACAGCATCATCATTGGTGATTCGTTTTCG
TCGTTGTTTGGTGCTACACCTGGTTTCCCGGCCATGTTAGCCAAGCGCAC
GAACGTCATTGCGTGGATGTCCGCCTTTGTGCTGCTGCCTTTATGCATGC
TTAAGAGCTTTGCTCCCTTGGCGCCTTTTTCGCTCCTCGGGATCTTGGGA
ACCATGTTCACTGCTGGTGTGCTTGCTCTGCGTCTGTTCGACGGGTCTTA
CGCGCCGGGAGGACAGTTTCACGAGGCTATTGCTGCCAACCTTCGTCCAG
CCCTTGCTTCAGGGGCGGGTTCTCCCCTGTTCGGTCCGATGATGTTCGTG
CTTGTTTCAATGCTGTCCACGTCGTTTATTGCGCATTACAATGCCCCCAA
GTTCTACACGGAGTTGGAGGATCGCTCGATTCCCAAGCTCAACAAGGTGG
TGCAGAATTCTTTTAATTTTTGCACGGCCGCATTTATCTTTATGATGGGC
TGCGGGTTCTTGACCTTTGGTGGGGCGTCGCAGGGCTTGATTTTGAACAA
CTACGCCGAGAAGGACGTGCTTGCCAAGCTGTGTCGGTTGGCGATTGGGG
TGAGCATAGTCTTTGGTTACCCCTTGACGTTTGTGGGGATTCGCGACGGA
GTGTTGGACTTGATGGGGAAGAAGAATCCAAGCGGGAGAGCGCAGACAAT
CACCACGTTGATTTTGTTGTCTATCACCAGCACCTTGGCTGTGTTCTTAA
GAGATGTCGGGTTTGTTGTCTCGTTTGGTGGGGCGTTGTTAGGGAGTTGC
ATTATTTATATATTCCCGGCGTTGATTTTCATTAGGACCATGGCGGCCAA
GATTAAGAGTGGGGAGATCGTGGAGACGCAGGCGGTGAAGAGGGAGGTGC
TTTTGAATAAGGGTATCACGGTTTTGGGGGTGGTGATGGCGATTATTGGC
GCGTCGGTGTCGGTGCTGAAGACGTTCGTGCTGAACAAGTAA
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Synonyms
Publications