NO21G01050.1, NO21G01050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01050.1
Unique NameNO21G01050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length837
Alignment locationchr21:331683..332895 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:331683..332895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01050.1 vs.
Match: EWM22604.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 404.4 bits (1038), Expect = 2.800e-109
Identity = 213/275 (77.45%), Postives = 236/275 (85.82%), Query Frame = 0 
Query:    4 QQRFRGKVVVVTGGGAGIGAAICERFHTEGAKVYIVDVNERAADATAAALTDKQADAIGAEDGQAPRAVAAIVDISQEALVSAFMDQVHATDGRLDVLVNNAARFVLKSAEGATETDWDVVMGSNIKGYGLASKHAIRVMKATMAKGSASEASGCSIVNLGSISSFVGQAGMCTYSATKAAILALTRCTAIDCGPYGIRVNAICPGPILTEATKKHADSQGKNMDDMVSELTGHMIQHRMGAPSEVAAAVAFMASVDATFITGASLLVDGGYSAL 279
            QQRF GKVV+VTGGGAGIG  IC+RFH EGAKV+IVD N   A+A AAAL   Q D  G E   A RAV AIVDISQE  VSA +DQ+  TDGRLDVLVNNAARFVLKSAE A E DWD V+ SN+KGYGL SKHAIRVMKAT  +GS++EASGCSI+NLGSISSFVGQ GMCTYSATKAA+LALTRCTAIDCGPYGIRVNA+CPGPILTEATK+HA SQGK+M++MVSELTGHMIQHRMG P+E+AA VAFMAS DA+F++GASLLVDGGYSAL
Sbjct:    3 QQRFEGKVVLVTGGGAGIGTGICKRFHAEGAKVWIVDTNREGAEAAAAALN--QVDN-GKE--HARRAVTAIVDISQETAVSALLDQIEVTDGRLDVLVNNAARFVLKSAEMAEERDWDNVLASNVKGYGLVSKHAIRVMKATKTRGSSTEASGCSIINLGSISSFVGQPGMCTYSATKAAVLALTRCTAIDCGPYGIRVNAVCPGPILTEATKRHAASQGKSMEEMVSELTGHMIQHRMGTPAEIAAVVAFMASEDASFVSGASLLVDGGYSAL 272
The following BLAST results are available for this feature:
BLAST of NO21G01050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700800Expect = 2.80e-109 / Id = 77.45SequenceEWM22604.1
Match NameE-valueIdentityDescription
EWM22604.12.800e-10977.45short-chain dehydrogenase reductase sdr [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01050NO21G01050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01050.1NO21G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01050.1.cds1NO21G01050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01050.1.cds2NO21G01050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01050.1.cds3NO21G01050.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01050.1.cds4NO21G01050.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01050.1.cds5NO21G01050.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01050.1 ID=NO21G01050.1|Name=NO21G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=837bp
ATGACCCAGCAGCAGCGTTTCAGGGGCAAGGTGGTGGTTGTAACAGGCGG
CGGCGCCGGCATCGGGGCAGCCATCTGCGAGCGGTTTCATACTGAAGGTG
CCAAGGTCTATATCGTGGACGTGAACGAGAGAGCTGCCGATGCCACGGCA
GCGGCACTCACCGACAAGCAAGCCGACGCAATTGGAGCAGAGGACGGGCA
AGCCCCAAGAGCAGTGGCAGCAATCGTGGACATCTCCCAAGAGGCCCTTG
TGAGTGCTTTCATGGACCAAGTGCATGCCACGGACGGACGACTAGATGTA
CTGGTGAACAATGCCGCGCGGTTTGTACTCAAGAGTGCGGAGGGGGCAAC
CGAGACGGATTGGGACGTGGTGATGGGAAGTAATATAAAAGGGTATGGCC
TGGCTTCAAAACACGCGATTCGGGTGATGAAGGCGACTATGGCCAAGGGG
AGTGCCAGCGAAGCTTCCGGGTGCTCGATCGTGAATCTTGGCTCCATTTC
GTCGTTTGTGGGACAGGCAGGCATGTGTACTTATAGCGCTACCAAAGCCG
CCATTTTAGCCTTGACAAGATGCACAGCAATTGACTGTGGTCCTTATGGG
ATAAGGGTGAACGCGATATGTCCTGGCCCTATTTTGACGGAGGCGACAAA
GAAGCATGCTGATAGCCAGGGTAAGAACATGGACGACATGGTTTCTGAGC
TGACAGGACATATGATCCAGCATCGAATGGGAGCACCTTCAGAAGTGGCT
GCTGCCGTTGCATTTATGGCCAGTGTGGATGCCACGTTTATAACAGGGGC
CTCCCTTTTGGTGGATGGGGGGTATTCTGCTTTGTAG
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protein sequence of NO21G01050.1

>NO21G01050.1-protein ID=NO21G01050.1-protein|Name=NO21G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MTQQQRFRGKVVVVTGGGAGIGAAICERFHTEGAKVYIVDVNERAADATA
AALTDKQADAIGAEDGQAPRAVAAIVDISQEALVSAFMDQVHATDGRLDV
LVNNAARFVLKSAEGATETDWDVVMGSNIKGYGLASKHAIRVMKATMAKG
SASEASGCSIVNLGSISSFVGQAGMCTYSATKAAILALTRCTAIDCGPYG
IRVNAICPGPILTEATKKHADSQGKNMDDMVSELTGHMIQHRMGAPSEVA
AAVAFMASVDATFITGASLLVDGGYSAL*
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mRNA from alignment at chr21:331683..332895+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01050.1 ID=NO21G01050.1|Name=NO21G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1213bp|location=Sequence derived from alignment at chr21:331683..332895+ (Nannochloropsis oceanica)
ATGACCCAGCAGCAGCGTTTCAGGGGCAAGGTGGTGGTTGTAACAGGTAC
TTTTGTTTTTTTACGTTTTCCTGCCCTGTCCGTCTTCGCGCGCTCCGTCC
ACACATGCCTTTACCGCAATCCCAACCCCTACCAACTCCGACAGGCGGCG
GCGCCGGCATCGGGGCAGCCATCTGCGAGCGGTTTCATACTGAAGGTGCC
AAGGTCTATATCGTGGACGTGAACGAGAGAGCTGCCGATGCCACGGCAGC
GGCACTCACCGACAAGCAAGCCGACGCAATTGGAGCAGAGGACGGGCAAG
CCCCAAGAGCAGTGGCAGCAATCGTGGACATCTCCCAAGAGGCCCTTGTG
AGTGCTTTCATGGACCAAGTGCATGCCACGGACGGACGACTAGATGTACT
GGTGAACAATGCCGCGCGGTTTGTACTCAAGAGGCAAGTAGCTTTGCTCA
TACTTTCTCCTTTATTTACAGAACTTTTCACACTGGCCCCCCTCCCTCCT
TTCTCCCCCTCCTTTAATTCATTCAGTGCGGAGGGGGCAACCGAGACGGA
TTGGGACGTGGTGATGGGAAGTAATATAAAAGGGTATGGCCTGGCTTCAA
AACACGCGATTCGGGTGATGAAGGCGACTATGGCCAAGGGGAGTGCCAGC
GAAGCTTGTAGGTATTTGTTTTGCTTTTGGTCGAGGAGGATTATACGGAA
GGCGTATGGAAAGGGTGCATCTACGTTCGCTTATTCTCCCTCTCTCCGTC
TTTGCCTTTACTCAGCCGGGTGCTCGATCGTGAATCTTGGCTCCATTTCG
TCGTTTGTGGGACAGGCAGGCATGTGTACTTATAGCGCTACCAAAGCCGC
CATTTTAGCCTTGACAAGATGCACAGCAATTGACTGTGGTCCTTATGGGA
TAAGGGTGAACGCGATATGTCCTGGCCCTATTTTGACGGAGGCGACAAAG
AAGCATGCTGATAGCCAGGTAAGGGAAGGAGGATGGGGGAGGCGAGCGGC
CTTTTGTTCTTACCCGCCTCCCTCCTCCCTCTCTTTAACAACTAGGGTAA
GAACATGGACGACATGGTTTCTGAGCTGACAGGACATATGATCCAGCATC
GAATGGGAGCACCTTCAGAAGTGGCTGCTGCCGTTGCATTTATGGCCAGT
GTGGATGCCACGTTTATAACAGGGGCCTCCCTTTTGGTGGATGGGGGGTA
TTCTGCTTTGTAG
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Coding sequence (CDS) from alignment at chr21:331683..332895+

>NO21G01050.1 ID=NO21G01050.1|Name=NO21G01050.1|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at chr21:331683..332895+ (Nannochloropsis oceanica)
ATGACCCAGCAGCAGCGTTTCAGGGGCAAGGTGGTGGTTGTAACAGGCGG
CGGCGCCGGCATCGGGGCAGCCATCTGCGAGCGGTTTCATACTGAAGGTG
CCAAGGTCTATATCGTGGACGTGAACGAGAGAGCTGCCGATGCCACGGCA
GCGGCACTCACCGACAAGCAAGCCGACGCAATTGGAGCAGAGGACGGGCA
AGCCCCAAGAGCAGTGGCAGCAATCGTGGACATCTCCCAAGAGGCCCTTG
TGAGTGCTTTCATGGACCAAGTGCATGCCACGGACGGACGACTAGATGTA
CTGGTGAACAATGCCGCGCGGTTTGTACTCAAGAGTGCGGAGGGGGCAAC
CGAGACGGATTGGGACGTGGTGATGGGAAGTAATATAAAAGGGTATGGCC
TGGCTTCAAAACACGCGATTCGGGTGATGAAGGCGACTATGGCCAAGGGG
AGTGCCAGCGAAGCTTCCGGGTGCTCGATCGTGAATCTTGGCTCCATTTC
GTCGTTTGTGGGACAGGCAGGCATGTGTACTTATAGCGCTACCAAAGCCG
CCATTTTAGCCTTGACAAGATGCACAGCAATTGACTGTGGTCCTTATGGG
ATAAGGGTGAACGCGATATGTCCTGGCCCTATTTTGACGGAGGCGACAAA
GAAGCATGCTGATAGCCAGGGTAAGAACATGGACGACATGGTTTCTGAGC
TGACAGGACATATGATCCAGCATCGAATGGGAGCACCTTCAGAAGTGGCT
GCTGCCGTTGCATTTATGGCCAGTGTGGATGCCACGTTTATAACAGGGGC
CTCCCTTTTGGTGGATGGGGGGTATTCTGCTTTGTAG
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Synonyms
Publications