NO21G00680.3, NO21G00680.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00680.3
Unique NameNO21G00680.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1846
Alignment locationchr21:229975..233033 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:229975..233033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00680.3 vs.
Match: XP_005856043.1 (membrane protein, partial [Nannochloropsis gaditana CCMP526]; EKU20316.1 membrane protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 282.7 bits (722), Expect = 2.300e-72
Identity = 146/196 (74.49%), Postives = 163/196 (83.16%), Query Frame = 0 
Query:  185 EDATYLTPLDVKDFPDLKIVHGFVGSILGFSIGFRTNAAYDRYYEGRKILSTILENSRSIIRDVYSFILKTPSPPSFPPS-PPLSAPDDAAVEVVSDDIRRRLNVLFAFVRQSVRESLIGFSPDSDMAAVPFINTTYYLDPSFPQLLDLLSKDEAIRYARLSPRSRPGAVSAEINIILQILGARIQYVDAFLGKVQ 380
            E  ++LT LDVKD+PDLKI HGF+GSILGFSI FRTNAAYDRYYEGRKILS ILENSRSI+RDVYSF+LK P+ PS   S   L  PDDAAV V+S D+RRRLN+LFAF+RQSVRESL GFSP+SDM  V F N+T+YLDPS P LLDLLSK+EA RYA LSPR+RPGAVSAEINIILQIL  R+ Y DAFL K Q
Sbjct:   99 EQGSFLTMLDVKDYPDLKIGHGFIGSILGFSIAFRTNAAYDRYYEGRKILSIILENSRSILRDVYSFLLKAPAFPSPTSSCSSLPVPDDAAVLVISSDLRRRLNILFAFIRQSVRESLSGFSPNSDMGTVSFSNSTFYLDPSLPHLLDLLSKEEAERYAALSPRARPGAVSAEINIILQILSTRMLYADAFLCKAQ 294
The following BLAST results are available for this feature:
BLAST of NO21G00680.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800SequenceXP_005856043.1
Match NameE-valueIdentityDescription
XP_005856043.12.300e-7274.49membrane protein, partial [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00680NO21G00680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00680.3NO21G00680.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00680.3.cds1NO21G00680.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00680.3.cds2NO21G00680.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00680.3.cds3NO21G00680.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00680.3.cds4NO21G00680.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00680.3.cds5NO21G00680.3.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00680.3.cds6NO21G00680.3.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00680.3.cds7NO21G00680.3.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00680.3 ID=NO21G00680.3|Name=NO21G00680.3|organism=Nannochloropsis oceanica|type=mRNA|length=1846bp
ACAGGGACAAAAAGCAAACTCTAACTGTCCGGAAACAATTTTTTGCCGCA
GTGCATTGTTGTCACCTTCTCAATTTTTAGGCCATCATGCCTTTACAGCC
AGGTCGGTTCAAGTGTGTCAATGCCGCCTTGGTGCAACCAGTGTGGCTGC
TACTCCTCCTGCTCCTTGCCCTGATCCTTGTAGTGCCAAGCCGCACATTT
ACGCCCACTTCCTACGTCAGCAGTACCACGATCAGAACGAGTGCTTGGCA
AGCGAAGCCTTTATTCACGACACGCACGTCCACCCCATGCCGTAGTACAC
GACAGTCGACACGCACGTCCACCCTCGTGCGCTGCTGGGACAGTTTACAG
CCATCCTCCACTCCCCCATCCACTAGCTCAGCCAGCAAACCCCTCTCTAT
CTCCTCTCCGACCCTCCCCGTGGGAACTTGGCCTCCGAAAGGTTTTCGGC
CATTTAAATCCTTACGAGAAGTGTGCGGAAACGTCTCACTAGAGTTGGAT
GAGGATCAACGGGCGCTCATCGGTCCTCCCACCTCCCAATTTTTCGCGGG
CTTTCGCCTGCGTGAGCTCGACGAGACCAATCAGAGCACCTTTTTGAAGG
AGGCAGGGCGCGTGCAACAAGGGAATGGTCTTAGCGCGGAGGACGCCACG
TACCTCACACCCCTGGATGTGAAGGACTTTCCCGACTTGAAGATCGTGCA
CGGATTCGTCGGCTCCATTCTCGGTTTCTCCATCGGCTTTAGGACGAACG
CTGCTTATGACCGCTACTATGAGGGTCGGAAGATTCTCAGCACCATCCTC
GAGAACAGCCGCTCCATCATTCGGGACGTCTACTCCTTTATCCTCAAGAC
CCCTTCCCCTCCCTCTTTCCCTCCCTCCCCCCCTCTCTCCGCCCCTGACG
ACGCCGCGGTGGAGGTGGTGAGCGATGACATACGCCGACGGCTCAACGTC
CTCTTTGCTTTCGTCCGCCAGTCCGTTCGAGAGTCCCTCATCGGCTTCTC
TCCCGACTCCGACATGGCGGCGGTGCCTTTCATCAACACCACCTACTACC
TCGACCCCTCCTTCCCCCAGCTCCTCGATTTGCTGTCCAAAGACGAGGCC
ATACGCTATGCCAGACTCTCCCCGCGGTCACGGCCAGGGGCAGTGAGTGC
GGAGATTAACATTATATTACAAATTCTGGGGGCGAGGATTCAATACGTCG
ATGCTTTCTTGGGCAAGGTCCAGGGCCATCTGGGCCGCATCACAGAGGCC
CATTCGACCATGCTCCGGATTCGCGATACCCCCGTGCCTTACCCCTACCT
GCTCATCCTCAACGTGGCCACCTTCATCTTCGTGTACTCCACGCCCTTTT
TGTACAACACCGGCATCGAGGGTCGGTACCTGGGCGTCCAGCTTCTGGTG
ATTGCTTACTACGGAATTCTGAGCATCGGGCAAAGCATTGAAAATCCCTA
CGCATGGGACACTTTCGACATTGATTTCGAGGACTTCGCGATTCAGCTCT
CAAGGGACTTGTCGGCCACGGCCAGCTGTCTCAAAGATGACCGGTCGGCT
TTCTTGCAGGAATTGGTGCATCCCCATGAGGAAGAGAAGGAGGAGGAGGA
GGAGGAGGAGGGAGGGAGGGAGGGAAGGGGAAAATAATGTCTAGAGAGGT
GCGAAAGGGGATTTGGAGGAGGAGGAGGATCATGAGGCAGGAAGATCCGA
TCTCCCCATCGTCCCGGCTGGAAAATCCATTATGCGGGCCCACCCGAGTA
CAAAACGATGGTGAGGATAATGATCATGATGAGGAGGAGGGTGATAATGA
GAATGGTGATTACGACGATGGTCATTTAGTCTTGAAAACAGACAAG
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protein sequence of NO21G00680.3

>NO21G00680.3-protein ID=NO21G00680.3-protein|Name=NO21G00680.3|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp
MPLQPGRFKCVNAALVQPVWLLLLLLLALILVVPSRTFTPTSYVSSTTIR
TSAWQAKPLFTTRTSTPCRSTRQSTRTSTLVRCWDSLQPSSTPPSTSSAS
KPLSISSPTLPVGTWPPKGFRPFKSLREVCGNVSLELDEDQRALIGPPTS
QFFAGFRLRELDETNQSTFLKEAGRVQQGNGLSAEDATYLTPLDVKDFPD
LKIVHGFVGSILGFSIGFRTNAAYDRYYEGRKILSTILENSRSIIRDVYS
FILKTPSPPSFPPSPPLSAPDDAAVEVVSDDIRRRLNVLFAFVRQSVRES
LIGFSPDSDMAAVPFINTTYYLDPSFPQLLDLLSKDEAIRYARLSPRSRP
GAVSAEINIILQILGARIQYVDAFLGKVQGHLGRITEAHSTMLRIRDTPV
PYPYLLILNVATFIFVYSTPFLYNTGIEGRYLGVQLLVIAYYGILSIGQS
IENPYAWDTFDIDFEDFAIQLSRDLSATASCLKDDRSAFLQELVHPHEEE
KEEEEEEEGGREGRGK*
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mRNA from alignment at chr21:229975..233033-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00680.3 ID=NO21G00680.3|Name=NO21G00680.3|organism=Nannochloropsis oceanica|type=mRNA|length=3059bp|location=Sequence derived from alignment at chr21:229975..233033- (Nannochloropsis oceanica)
ACAGGGACAAAAAGCAAACTCTAACTGTCCGGAAACAATTTTTTGCCGCA
GTGCATTGTTGTCACCTTCTCAATTTTTAGGCCATCATGCCTTTACAGCC
AGGTCGGTTCAAGTGTGTCAATGCCGCCTTGGTGCAACCAGTGTGGCTGC
TACTCCTCCTGCTCCTTGCCCTGATCCTTGTAGTGCCAAGCCGCACATTT
ACGCCCACTTCCTACGTCAGCAGTACCACGATCAGAACGAGTGCTTGGCA
AGCGAAGCCTTTATTCACGACACGCACGTCCACCCCATGCCGTAGTACAC
GACAGTCGACACGCACGTCCACCCTCGTGCGCTGCTGGGACAGTTTACAG
CCATCCTCCACTCCCCCATCCACTAGCTCAGCCAGCAAACCCCTCTCTAT
CTCCTCTCCGACCCTCCCCGTGGGAACTTGGCCTCCGAAAGGTTTTCGGC
CATTTAAATCCTTACGAGAAGTGTGCGGAAACGTCTCACTAGAGTTGGAT
GAGGATCAACGGGCGCTCATCGGTCCTCCCACCTCCCAATTTTTCGCGGG
CTTTCGCCTGCGTGAGCTCGACGAGACCAATCAGAGCACCTTTTTGAAGG
AGGCAGGGCGCGTGCAACAAGGGTGAGTGCCTTGCGTGGGTGGATGCCAG
TGGCACGTATTTGCTCACCCTCCCTCCCTCCCTCCTTCCAGCCTCCGGGG
CCTCGTCTGGTTTGCCTACCTCCTATGGCCTTACATCGGCTTCGGAATCT
TCTGCTCGCTGATTGCCCAAGTCATCGTCTACAACAGGAATGGTCTTAGC
GCGGAGGACGCCACGTACCTCACACCCCTGGATGTGAAGGACTTTCCCGA
CTTGAAGATCGTGCACGGATTCGTCGGCTCCATTCTCGGTTTCTCCATCG
GTATGCCATCCCTCCCTCCCTGTACTTTGCTTATATTTTCTTCCTCCCTC
CTTCCCTCCCTTTCTTCCTTCCTCCCTCCCTCCCCTTGTCAGTCTGTCGT
CATGTCTCTCCTTCTCCCACGTTCGTTCCCTCCCTCCCTCCCGCCCTCCC
TCCCTCCTTCCCCTCCCTCAGGCTTTAGGACGAACGCTGCTTATGACCGC
TACTATGAGGGTCGGAAGATTCTCAGGTCAGCACCACCTCCCTCCCTCCC
TCCCTCCCTCCCTTCCTCCCTCCCGCCTTTCCTCACGTCCGTCTCAATTA
CCACTTACCCACCTGTCCTTTACCCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTTGCTTCCTTCCTCGCCCCCTAGCACCATCCTCGAGAACAGCCGC
TCCATCATTCGGGACGTCTACTCCTTTATCCTCAAGACCCCTTCCCCTCC
CTCTTTCCCTCCCTCCCCCCCTCTCTCCGCCCCTGACGACGCCGCGGTGG
AGGTGGTGAGCGATGACATACGCCGACGGCTCAACGTCCTCTTTGCTTTC
GTCCGCCAGTCCGTTCGAGAGTCCCTCATCGGCTTCTCTCCCGACTCCGA
CATGGCGGCGGTGCCTTTCATCAACACCACCTACTACCTCGACCCCTCCT
TCCCCCAGCTCCTCGATTTGCTGTCCAAAGACGAGGCCATACGCTATGCC
AGACTCTCCCCGCGGTCACGGCCAGGGGCAGTGAGTGCGGAGATTAACAT
TATATTACAAATTCTGGGGGCGAGGATTCAATACGTCGATGCTTTCTTGG
GCAAGGTCCAGGTAGGCTTCACCCTCCCTCCCTCCCTCCCTCCCTCCCTC
TCTTTCCCTTTCCGTCATATTCCCACGGTCACGACCGGGTGTGGTGGGCG
GTGGACGTAGGAGTGGGAATAGAAGTATTTAGGAATAGATTAATTAGGCA
TAGGAGTAATTAGGAATAGAAGTATGAAGGAAAAGGAGTAATTAGGCATA
AGAGTAATTAGGAATAGAAATAAGTAAATGGATGGCATGGTGGCGGCAGA
TTTCACAGAGGGCGATGATGATATACCCACCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTAGGGCCATCTGGGCCGCATCACAGAGGCCCATTCGACCATGCTCC
GGATTCGCGATACCCCCGTGCCTTACCCCTACCTGCTCATCCTCAACGTG
GCCACCTTCATCTTCGTGTACTCCACGCCCTTTTTGTACAACACCGGCAT
CGAGGGTCGGTACCTGGGCGTCCAGCTTCTGGTGATTGCTTACTACGGTA
CGCCCGTCCTTCCATCCCTCCCTCCCTCTCTCCCTCCCTCTTTCTTTTTC
ATCCCTGTCCTTTTCGCTCGCTTTCGCTGTCCTTCCCAGGAGCCTTCTTC
CTTATCTTTTCAATGCGTTTTTATTTCCCACCCGAGCCATATCTATACTC
CCCGAGATGCCTTCCTTTGGTCTGATACATATTAAATTTTAAAACTCTCA
CCTTCACTCCGCCCTCCCCCCCTCCCTCCCTCTCTCCCATCTTTTCTGTT
GACGCACAGGAATTCTGAGCATCGGGCAAAGCATTGAAAATCCCTACGCA
TGGGACACTTTCGGTAAGCCCTCCCTCCCTCCCTCCCTCGCTCCCTCCCT
CAAACCCCAAGCCCCCTACGCACGGGACACCTTCCGTAAGCCCTCCCTCC
CTCCCTGCCTGTCTTCCTCCCTCTCCCTAGACATTGATTTCGAGGACTTC
GCGATTCAGCTCTCAAGGGACTTGTCGGCCACGGCCAGCTGTCTCAAAGA
TGACCGGTCGGCTTTCTTGCAGGAATTGGTGCATCCCCATGAGGAAGAGA
AGGAGGAGGAGGAGGAGGAGGAGGGAGGGAGGGAGGGAAGGGGAAAATAA
TGTCTAGAGAGGTGCGAAAGGGGATTTGGAGGAGGAGGAGGATCATGAGG
CAGGAAGATCCGATCTCCCCATCGTCCCGGCTGGAAAATCCATTATGCGG
GCCCACCCGAGTACAAAACGATGGTGAGGATAATGATCATGATGAGGAGG
AGGGTGATAATGAGAATGGTGATTACGACGATGGTCATTTAGTCTTGAAA
ACAGACAAG
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Coding sequence (CDS) from alignment at chr21:229975..233033-

>NO21G00680.3 ID=NO21G00680.3|Name=NO21G00680.3|organism=Nannochloropsis oceanica|type=CDS|length=1551bp|location=Sequence derived from alignment at chr21:229975..233033- (Nannochloropsis oceanica)
ATGCCTTTACAGCCAGGTCGGTTCAAGTGTGTCAATGCCGCCTTGGTGCA
ACCAGTGTGGCTGCTACTCCTCCTGCTCCTTGCCCTGATCCTTGTAGTGC
CAAGCCGCACATTTACGCCCACTTCCTACGTCAGCAGTACCACGATCAGA
ACGAGTGCTTGGCAAGCGAAGCCTTTATTCACGACACGCACGTCCACCCC
ATGCCGTAGTACACGACAGTCGACACGCACGTCCACCCTCGTGCGCTGCT
GGGACAGTTTACAGCCATCCTCCACTCCCCCATCCACTAGCTCAGCCAGC
AAACCCCTCTCTATCTCCTCTCCGACCCTCCCCGTGGGAACTTGGCCTCC
GAAAGGTTTTCGGCCATTTAAATCCTTACGAGAAGTGTGCGGAAACGTCT
CACTAGAGTTGGATGAGGATCAACGGGCGCTCATCGGTCCTCCCACCTCC
CAATTTTTCGCGGGCTTTCGCCTGCGTGAGCTCGACGAGACCAATCAGAG
CACCTTTTTGAAGGAGGCAGGGCGCGTGCAACAAGGGAATGGTCTTAGCG
CGGAGGACGCCACGTACCTCACACCCCTGGATGTGAAGGACTTTCCCGAC
TTGAAGATCGTGCACGGATTCGTCGGCTCCATTCTCGGTTTCTCCATCGG
CTTTAGGACGAACGCTGCTTATGACCGCTACTATGAGGGTCGGAAGATTC
TCAGCACCATCCTCGAGAACAGCCGCTCCATCATTCGGGACGTCTACTCC
TTTATCCTCAAGACCCCTTCCCCTCCCTCTTTCCCTCCCTCCCCCCCTCT
CTCCGCCCCTGACGACGCCGCGGTGGAGGTGGTGAGCGATGACATACGCC
GACGGCTCAACGTCCTCTTTGCTTTCGTCCGCCAGTCCGTTCGAGAGTCC
CTCATCGGCTTCTCTCCCGACTCCGACATGGCGGCGGTGCCTTTCATCAA
CACCACCTACTACCTCGACCCCTCCTTCCCCCAGCTCCTCGATTTGCTGT
CCAAAGACGAGGCCATACGCTATGCCAGACTCTCCCCGCGGTCACGGCCA
GGGGCAGTGAGTGCGGAGATTAACATTATATTACAAATTCTGGGGGCGAG
GATTCAATACGTCGATGCTTTCTTGGGCAAGGTCCAGGGCCATCTGGGCC
GCATCACAGAGGCCCATTCGACCATGCTCCGGATTCGCGATACCCCCGTG
CCTTACCCCTACCTGCTCATCCTCAACGTGGCCACCTTCATCTTCGTGTA
CTCCACGCCCTTTTTGTACAACACCGGCATCGAGGGTCGGTACCTGGGCG
TCCAGCTTCTGGTGATTGCTTACTACGGAATTCTGAGCATCGGGCAAAGC
ATTGAAAATCCCTACGCATGGGACACTTTCGACATTGATTTCGAGGACTT
CGCGATTCAGCTCTCAAGGGACTTGTCGGCCACGGCCAGCTGTCTCAAAG
ATGACCGGTCGGCTTTCTTGCAGGAATTGGTGCATCCCCATGAGGAAGAG
AAGGAGGAGGAGGAGGAGGAGGAGGGAGGGAGGGAGGGAAGGGGAAAATA
A
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Synonyms
Publications