Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:229975..233033 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G00680.2 vs.
Match: XP_005856043.1 (membrane protein, partial [Nannochloropsis gaditana CCMP526]; EKU20316.1 membrane protein, partial [Nannochloropsis gaditana CCMP526])
HSP 1 Score: 407.1 bits (1045), Expect = 8.200e-110
Identity = 205/294 (69.73%), Postives = 241/294 (81.97%), Query Frame = 0
Query: 119 GFRPFKSLREVCGNVSLELDEDQRALIGPPTSQFFAGFRLRELDETNQSTFLKEAGRVQQGLRGLVWFAYLLWPYIGFGIFCSLIAQVIVYNRNGLSAEDATYLTPLDVKDFPDLKIVHGFVGSILGFSIGFRTNAAYDRYYEGRKILSTILENSRSIIRDVYSFILKTPSPPSFPPS-PPLSAPDDAAVEVVSDDIRRRLNVLFAFVRQSVRESLIGFSPDSDMAAVPFINTTYYLDPSFPQLLDLLSKDEAIRYARLSPRSRPGAVSAEINIILQILGARIQYVDAFLGKVQ 412
GFRPFKSLRE G+V L++DE + LI P TSQFFAGF+LRELD++N +TFLK+ G++Q+ LR L+WFAYLLWPYIGFGIF S++AQ+++ + E ++LT LDVKD+PDLKI HGF+GSILGFSI FRTNAAYDRYYEGRKILS ILENSRSI+RDVYSF+LK P+ PS S L PDDAAV V+S D+RRRLN+LFAF+RQSVRESL GFSP+SDM V F N+T+YLDPS P LLDLLSK+EA RYA LSPR+RPGAVSAEINIILQIL R+ Y DAFL K Q
Sbjct: 1 GFRPFKSLREENGDVVLDVDEPHQPLIAPLTSQFFAGFQLRELDDSNMNTFLKDTGKIQKTLRTLLWFAYLLWPYIGFGIFSSILAQLLLATVSQEHVEQGSFLTMLDVKDYPDLKIGHGFIGSILGFSIAFRTNAAYDRYYEGRKILSIILENSRSILRDVYSFLLKAPAFPSPTSSCSSLPVPDDAAVLVISSDLRRRLNILFAFIRQSVRESLSGFSPNSDMGTVSFSNSTFYLDPSLPHLLDLLSKEEAERYAALSPRARPGAVSAEINIILQILSTRMLYADAFLCKAQ 294
The following BLAST results are available for this feature:
BLAST of NO21G00680.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 Expect = 8.20e-110 / Id = 69.73 Sequence XP_005856043.1
Match Name E-value Identity Description
XP_005856043.1 8.200e-110 69.73 membrane protein, partial [Nannochloropsis gaditan... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G00680.2 ID=NO21G00680.2|Name=NO21G00680.2|organism=Nannochloropsis oceanica|type=mRNA|length=2204bp back to top protein sequence of NO21G00680.2
>NO21G00680.2-protein ID=NO21G00680.2-protein|Name=NO21G00680.2|organism=Nannochloropsis oceanica|type=polypeptide|length=537bp back to top mRNA from alignment at chr21:229975..233033-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00680.2 ID=NO21G00680.2|Name=NO21G00680.2|organism=Nannochloropsis oceanica|type=mRNA|length=3059bp|location=Sequence derived from alignment at chr21:229975..233033- (Nannochloropsis oceanica)ATGCCTTTACAGCC
AGGTCGGTTCAAGTGTGTCAATGCCGCCTTGGTGCAACCAGTGTGGCTGC
TACTCCTCCTGCTCCTTGCCCTGATCCTTGTAGTGCCAAGCCGCACATTT
ACGCCCACTTCCTACGTCAGCAGTACCACGATCAGAACGAGTGCTTGGCA
AGCGAAGCCTTTATTCACGACACGCACGTCCACCCCATGCCGTAGTACAC
GACAGTCGACACGCACGTCCACCCTCGTGCGCTGCTGGGACAGTTTACAG
CCATCCTCCACTCCCCCATCCACTAGCTCAGCCAGCAAACCCCTCTCTAT
CTCCTCTCCGACCCTCCCCGTGGGAACTTGGCCTCCGAAAGGTTTTCGGC
CATTTAAATCCTTACGAGAAGTGTGCGGAAACGTCTCACTAGAGTTGGAT
GAGGATCAACGGGCGCTCATCGGTCCTCCCACCTCCCAATTTTTCGCGGG
CTTTCGCCTGCGTGAGCTCGACGAGACCAATCAGAGCACCTTTTTGAAGG
AGGCAGGGCGCGTGCAACAAGG GTGAGTGCCTTGCGTGGGTGGATGCCAG
TGGCACGTATTTGCTCACCCTCCCTCCCTCCCTCCTTCCAGCCTCCGGGG
CCTCGTCTGGTTTGCCTACCTCCTATGGCCTTACATCGGCTTCGGAATCT
TCTGCTCGCTGATTGCCCAAGTCATCGTCTACAACAGGAATGGTCTTAGC
GCGGAGGACGCCACGTACCTCACACCCCTGGATGTGAAGGACTTTCCCGA
CTTGAAGATCGTGCACGGATTCGTCGGCTCCATTCTCGGTTTCTCCATCG
GTATGCCATCCCTCCCTCCCTGTACTTTGCTTATATTTTCTTCCTCCCTC
CTTCCCTCCCTTTCTTCCTTCCTCCCTCCCTCCCCTTGTCAGTCTGTCGT
CATGTCTCTCCTTCTCCCACGTTCGTTCCCTCCCTCCCTCCCGCCCTCCC
TCCCTCCTTCCCCTCCCTCAGGCTTTAGGACGAACGCTGCTTATGACCGC
TACTATGAGGGTCGGAAGATTCTCAG GTCAGCACCACCTCCCTCCCTCCC
TCCCTCCCTCCCTTCCTCCCTCCCGCCTTTCCTCACGTCCGTCTCAATTA
CCACTTACCCACCTGTCCTTTACCCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTTGCTTCCTTCCTCGCCCCCTAGCACCATCCTCGAGAACAGCCGC
TCCATCATTCGGGACGTCTACTCCTTTATCCTCAAGACCCCTTCCCCTCC
CTCTTTCCCTCCCTCCCCCCCTCTCTCCGCCCCTGACGACGCCGCGGTGG
AGGTGGTGAGCGATGACATACGCCGACGGCTCAACGTCCTCTTTGCTTTC
GTCCGCCAGTCCGTTCGAGAGTCCCTCATCGGCTTCTCTCCCGACTCCGA
CATGGCGGCGGTGCCTTTCATCAACACCACCTACTACCTCGACCCCTCCT
TCCCCCAGCTCCTCGATTTGCTGTCCAAAGACGAGGCCATACGCTATGCC
AGACTCTCCCCGCGGTCACGGCCAGGGGCAGTGAGTGCGGAGATTAACAT
TATATTACAAATTCTGGGGGCGAGGATTCAATACGTCGATGCTTTCTTGG
GCAAGGTCCAG GTAGGCTTCACCCTCCCTCCCTCCCTCCCTCCCTCCCTC
TCTTTCCCTTTCCGTCATATTCCCACGGTCACGACCGGGTGTGGTGGGCG
GTGGACGTAGGAGTGGGAATAGAAGTATTTAGGAATAGATTAATTAGGCA
TAGGAGTAATTAGGAATAGAAGTATGAAGGAAAAGGAGTAATTAGGCATA
AGAGTAATTAGGAATAGAAATAAGTAAATGGATGGCATGGTGGCGGCAGA
TTTCACAGAGGGCGATGATGATATACCCACCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTAGGGCCATCTGGGCCGCATCACAGAGGCCCATTCGACCATGCTCC
GGATTCGCGATACCCCCGTGCCTTACCCCTACCTGCTCATCCTCAACGTG
GCCACCTTCATCTTCGTGTACTCCACGCCCTTTTTGTACAACACCGGCAT
CGAGGGTCGGTACCTGGGCGTCCAGCTTCTGGTGATTGCTTACTACGGTA
CGCCCGTCCTTCCATCCCTCCCTCCCTCTCTCCCTCCCTCTTTCTTTTTC
ATCCCTGTCCTTTTCGCTCGCTTTCGCTGTCCTTCCCAGGAGCCTTCTTC
CTTATCTTTTCAATGCGTTTTTATTTCCCACCCGAGCCATATCTATACTC
CCCGAGATGCCTTCCTTTGGTCTGATACATATTAA back to top Coding sequence (CDS) from alignment at chr21:229975..233033-
>NO21G00680.2 ID=NO21G00680.2|Name=NO21G00680.2|organism=Nannochloropsis oceanica|type=CDS|length=1611bp|location=Sequence derived from alignment at chr21:229975..233033- (Nannochloropsis oceanica) back to top