NO21G00680.1, NO21G00680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00680.1
Unique NameNO21G00680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1942
Alignment locationchr21:229975..233033 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:229975..233033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00680.1 vs.
Match: XP_005856043.1 (membrane protein, partial [Nannochloropsis gaditana CCMP526]; EKU20316.1 membrane protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 407.1 bits (1045), Expect = 8.400e-110
Identity = 205/294 (69.73%), Postives = 241/294 (81.97%), Query Frame = 0 
Query:  119 GFRPFKSLREVCGNVSLELDEDQRALIGPPTSQFFAGFRLRELDETNQSTFLKEAGRVQQGLRGLVWFAYLLWPYIGFGIFCSLIAQVIVYNRNGLSAEDATYLTPLDVKDFPDLKIVHGFVGSILGFSIGFRTNAAYDRYYEGRKILSTILENSRSIIRDVYSFILKTPSPPSFPPS-PPLSAPDDAAVEVVSDDIRRRLNVLFAFVRQSVRESLIGFSPDSDMAAVPFINTTYYLDPSFPQLLDLLSKDEAIRYARLSPRSRPGAVSAEINIILQILGARIQYVDAFLGKVQ 412
            GFRPFKSLRE  G+V L++DE  + LI P TSQFFAGF+LRELD++N +TFLK+ G++Q+ LR L+WFAYLLWPYIGFGIF S++AQ+++   +    E  ++LT LDVKD+PDLKI HGF+GSILGFSI FRTNAAYDRYYEGRKILS ILENSRSI+RDVYSF+LK P+ PS   S   L  PDDAAV V+S D+RRRLN+LFAF+RQSVRESL GFSP+SDM  V F N+T+YLDPS P LLDLLSK+EA RYA LSPR+RPGAVSAEINIILQIL  R+ Y DAFL K Q
Sbjct:    1 GFRPFKSLREENGDVVLDVDEPHQPLIAPLTSQFFAGFQLRELDDSNMNTFLKDTGKIQKTLRTLLWFAYLLWPYIGFGIFSSILAQLLLATVSQEHVEQGSFLTMLDVKDYPDLKIGHGFIGSILGFSIAFRTNAAYDRYYEGRKILSIILENSRSILRDVYSFLLKAPAFPSPTSSCSSLPVPDDAAVLVISSDLRRRLNILFAFIRQSVRESLSGFSPNSDMGTVSFSNSTFYLDPSLPHLLDLLSKEEAERYAALSPRARPGAVSAEINIILQILSTRMLYADAFLCKAQ 294
The following BLAST results are available for this feature:
BLAST of NO21G00680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800Expect = 8.40e-110 / Id = 69.73SequenceXP_005856043.1
Match NameE-valueIdentityDescription
XP_005856043.18.400e-11069.73membrane protein, partial [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00680NO21G00680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00680.1NO21G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00680.1.cds1NO21G00680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00680.1.cds2NO21G00680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00680.1.cds3NO21G00680.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00680.1.cds4NO21G00680.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00680.1.cds5NO21G00680.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00680.1.cds6NO21G00680.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00680.1.cds7NO21G00680.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00680.1 ID=NO21G00680.1|Name=NO21G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1942bp
ACAGGGACAAAAAGCAAACTCTAACTGTCCGGAAACAATTTTTTGCCGCA
GTGCATTGTTGTCACCTTCTCAATTTTTAGGCCATCATGCCTTTACAGCC
AGGTCGGTTCAAGTGTGTCAATGCCGCCTTGGTGCAACCAGTGTGGCTGC
TACTCCTCCTGCTCCTTGCCCTGATCCTTGTAGTGCCAAGCCGCACATTT
ACGCCCACTTCCTACGTCAGCAGTACCACGATCAGAACGAGTGCTTGGCA
AGCGAAGCCTTTATTCACGACACGCACGTCCACCCCATGCCGTAGTACAC
GACAGTCGACACGCACGTCCACCCTCGTGCGCTGCTGGGACAGTTTACAG
CCATCCTCCACTCCCCCATCCACTAGCTCAGCCAGCAAACCCCTCTCTAT
CTCCTCTCCGACCCTCCCCGTGGGAACTTGGCCTCCGAAAGGTTTTCGGC
CATTTAAATCCTTACGAGAAGTGTGCGGAAACGTCTCACTAGAGTTGGAT
GAGGATCAACGGGCGCTCATCGGTCCTCCCACCTCCCAATTTTTCGCGGG
CTTTCGCCTGCGTGAGCTCGACGAGACCAATCAGAGCACCTTTTTGAAGG
AGGCAGGGCGCGTGCAACAAGGCCTCCGGGGCCTCGTCTGGTTTGCCTAC
CTCCTATGGCCTTACATCGGCTTCGGAATCTTCTGCTCGCTGATTGCCCA
AGTCATCGTCTACAACAGGAATGGTCTTAGCGCGGAGGACGCCACGTACC
TCACACCCCTGGATGTGAAGGACTTTCCCGACTTGAAGATCGTGCACGGA
TTCGTCGGCTCCATTCTCGGTTTCTCCATCGGCTTTAGGACGAACGCTGC
TTATGACCGCTACTATGAGGGTCGGAAGATTCTCAGCACCATCCTCGAGA
ACAGCCGCTCCATCATTCGGGACGTCTACTCCTTTATCCTCAAGACCCCT
TCCCCTCCCTCTTTCCCTCCCTCCCCCCCTCTCTCCGCCCCTGACGACGC
CGCGGTGGAGGTGGTGAGCGATGACATACGCCGACGGCTCAACGTCCTCT
TTGCTTTCGTCCGCCAGTCCGTTCGAGAGTCCCTCATCGGCTTCTCTCCC
GACTCCGACATGGCGGCGGTGCCTTTCATCAACACCACCTACTACCTCGA
CCCCTCCTTCCCCCAGCTCCTCGATTTGCTGTCCAAAGACGAGGCCATAC
GCTATGCCAGACTCTCCCCGCGGTCACGGCCAGGGGCAGTGAGTGCGGAG
ATTAACATTATATTACAAATTCTGGGGGCGAGGATTCAATACGTCGATGC
TTTCTTGGGCAAGGTCCAGGGCCATCTGGGCCGCATCACAGAGGCCCATT
CGACCATGCTCCGGATTCGCGATACCCCCGTGCCTTACCCCTACCTGCTC
ATCCTCAACGTGGCCACCTTCATCTTCGTGTACTCCACGCCCTTTTTGTA
CAACACCGGCATCGAGGGTCGGTACCTGGGCGTCCAGCTTCTGGTGATTG
CTTACTACGGAATTCTGAGCATCGGGCAAAGCATTGAAAATCCCTACGCA
TGGGACACTTTCGACATTGATTTCGAGGACTTCGCGATTCAGCTCTCAAG
GGACTTGTCGGCCACGGCCAGCTGTCTCAAAGATGACCGGTCGGCTTTCT
TGCAGGAATTGGTGCATCCCCATGAGGAAGAGAAGGAGGAGGAGGAGGAG
GAGGAGGGAGGGAGGGAGGGAAGGGGAAAATAATGTCTAGAGAGGTGCGA
AAGGGGATTTGGAGGAGGAGGAGGATCATGAGGCAGGAAGATCCGATCTC
CCCATCGTCCCGGCTGGAAAATCCATTATGCGGGCCCACCCGAGTACAAA
ACGATGGTGAGGATAATGATCATGATGAGGAGGAGGGTGATAATGAGAAT
GGTGATTACGACGATGGTCATTTAGTCTTGAAAACAGACAAG
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protein sequence of NO21G00680.1

>NO21G00680.1-protein ID=NO21G00680.1-protein|Name=NO21G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=549bp
MPLQPGRFKCVNAALVQPVWLLLLLLLALILVVPSRTFTPTSYVSSTTIR
TSAWQAKPLFTTRTSTPCRSTRQSTRTSTLVRCWDSLQPSSTPPSTSSAS
KPLSISSPTLPVGTWPPKGFRPFKSLREVCGNVSLELDEDQRALIGPPTS
QFFAGFRLRELDETNQSTFLKEAGRVQQGLRGLVWFAYLLWPYIGFGIFC
SLIAQVIVYNRNGLSAEDATYLTPLDVKDFPDLKIVHGFVGSILGFSIGF
RTNAAYDRYYEGRKILSTILENSRSIIRDVYSFILKTPSPPSFPPSPPLS
APDDAAVEVVSDDIRRRLNVLFAFVRQSVRESLIGFSPDSDMAAVPFINT
TYYLDPSFPQLLDLLSKDEAIRYARLSPRSRPGAVSAEINIILQILGARI
QYVDAFLGKVQGHLGRITEAHSTMLRIRDTPVPYPYLLILNVATFIFVYS
TPFLYNTGIEGRYLGVQLLVIAYYGILSIGQSIENPYAWDTFDIDFEDFA
IQLSRDLSATASCLKDDRSAFLQELVHPHEEEKEEEEEEEGGREGRGK*
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mRNA from alignment at chr21:229975..233033-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00680.1 ID=NO21G00680.1|Name=NO21G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=3059bp|location=Sequence derived from alignment at chr21:229975..233033- (Nannochloropsis oceanica)
ACAGGGACAAAAAGCAAACTCTAACTGTCCGGAAACAATTTTTTGCCGCA
GTGCATTGTTGTCACCTTCTCAATTTTTAGGCCATCATGCCTTTACAGCC
AGGTCGGTTCAAGTGTGTCAATGCCGCCTTGGTGCAACCAGTGTGGCTGC
TACTCCTCCTGCTCCTTGCCCTGATCCTTGTAGTGCCAAGCCGCACATTT
ACGCCCACTTCCTACGTCAGCAGTACCACGATCAGAACGAGTGCTTGGCA
AGCGAAGCCTTTATTCACGACACGCACGTCCACCCCATGCCGTAGTACAC
GACAGTCGACACGCACGTCCACCCTCGTGCGCTGCTGGGACAGTTTACAG
CCATCCTCCACTCCCCCATCCACTAGCTCAGCCAGCAAACCCCTCTCTAT
CTCCTCTCCGACCCTCCCCGTGGGAACTTGGCCTCCGAAAGGTTTTCGGC
CATTTAAATCCTTACGAGAAGTGTGCGGAAACGTCTCACTAGAGTTGGAT
GAGGATCAACGGGCGCTCATCGGTCCTCCCACCTCCCAATTTTTCGCGGG
CTTTCGCCTGCGTGAGCTCGACGAGACCAATCAGAGCACCTTTTTGAAGG
AGGCAGGGCGCGTGCAACAAGGGTGAGTGCCTTGCGTGGGTGGATGCCAG
TGGCACGTATTTGCTCACCCTCCCTCCCTCCCTCCTTCCAGCCTCCGGGG
CCTCGTCTGGTTTGCCTACCTCCTATGGCCTTACATCGGCTTCGGAATCT
TCTGCTCGCTGATTGCCCAAGTCATCGTCTACAACAGGAATGGTCTTAGC
GCGGAGGACGCCACGTACCTCACACCCCTGGATGTGAAGGACTTTCCCGA
CTTGAAGATCGTGCACGGATTCGTCGGCTCCATTCTCGGTTTCTCCATCG
GTATGCCATCCCTCCCTCCCTGTACTTTGCTTATATTTTCTTCCTCCCTC
CTTCCCTCCCTTTCTTCCTTCCTCCCTCCCTCCCCTTGTCAGTCTGTCGT
CATGTCTCTCCTTCTCCCACGTTCGTTCCCTCCCTCCCTCCCGCCCTCCC
TCCCTCCTTCCCCTCCCTCAGGCTTTAGGACGAACGCTGCTTATGACCGC
TACTATGAGGGTCGGAAGATTCTCAGGTCAGCACCACCTCCCTCCCTCCC
TCCCTCCCTCCCTTCCTCCCTCCCGCCTTTCCTCACGTCCGTCTCAATTA
CCACTTACCCACCTGTCCTTTACCCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTTGCTTCCTTCCTCGCCCCCTAGCACCATCCTCGAGAACAGCCGC
TCCATCATTCGGGACGTCTACTCCTTTATCCTCAAGACCCCTTCCCCTCC
CTCTTTCCCTCCCTCCCCCCCTCTCTCCGCCCCTGACGACGCCGCGGTGG
AGGTGGTGAGCGATGACATACGCCGACGGCTCAACGTCCTCTTTGCTTTC
GTCCGCCAGTCCGTTCGAGAGTCCCTCATCGGCTTCTCTCCCGACTCCGA
CATGGCGGCGGTGCCTTTCATCAACACCACCTACTACCTCGACCCCTCCT
TCCCCCAGCTCCTCGATTTGCTGTCCAAAGACGAGGCCATACGCTATGCC
AGACTCTCCCCGCGGTCACGGCCAGGGGCAGTGAGTGCGGAGATTAACAT
TATATTACAAATTCTGGGGGCGAGGATTCAATACGTCGATGCTTTCTTGG
GCAAGGTCCAGGTAGGCTTCACCCTCCCTCCCTCCCTCCCTCCCTCCCTC
TCTTTCCCTTTCCGTCATATTCCCACGGTCACGACCGGGTGTGGTGGGCG
GTGGACGTAGGAGTGGGAATAGAAGTATTTAGGAATAGATTAATTAGGCA
TAGGAGTAATTAGGAATAGAAGTATGAAGGAAAAGGAGTAATTAGGCATA
AGAGTAATTAGGAATAGAAATAAGTAAATGGATGGCATGGTGGCGGCAGA
TTTCACAGAGGGCGATGATGATATACCCACCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTAGGGCCATCTGGGCCGCATCACAGAGGCCCATTCGACCATGCTCC
GGATTCGCGATACCCCCGTGCCTTACCCCTACCTGCTCATCCTCAACGTG
GCCACCTTCATCTTCGTGTACTCCACGCCCTTTTTGTACAACACCGGCAT
CGAGGGTCGGTACCTGGGCGTCCAGCTTCTGGTGATTGCTTACTACGGTA
CGCCCGTCCTTCCATCCCTCCCTCCCTCTCTCCCTCCCTCTTTCTTTTTC
ATCCCTGTCCTTTTCGCTCGCTTTCGCTGTCCTTCCCAGGAGCCTTCTTC
CTTATCTTTTCAATGCGTTTTTATTTCCCACCCGAGCCATATCTATACTC
CCCGAGATGCCTTCCTTTGGTCTGATACATATTAAATTTTAAAACTCTCA
CCTTCACTCCGCCCTCCCCCCCTCCCTCCCTCTCTCCCATCTTTTCTGTT
GACGCACAGGAATTCTGAGCATCGGGCAAAGCATTGAAAATCCCTACGCA
TGGGACACTTTCGGTAAGCCCTCCCTCCCTCCCTCCCTCGCTCCCTCCCT
CAAACCCCAAGCCCCCTACGCACGGGACACCTTCCGTAAGCCCTCCCTCC
CTCCCTGCCTGTCTTCCTCCCTCTCCCTAGACATTGATTTCGAGGACTTC
GCGATTCAGCTCTCAAGGGACTTGTCGGCCACGGCCAGCTGTCTCAAAGA
TGACCGGTCGGCTTTCTTGCAGGAATTGGTGCATCCCCATGAGGAAGAGA
AGGAGGAGGAGGAGGAGGAGGAGGGAGGGAGGGAGGGAAGGGGAAAATAA
TGTCTAGAGAGGTGCGAAAGGGGATTTGGAGGAGGAGGAGGATCATGAGG
CAGGAAGATCCGATCTCCCCATCGTCCCGGCTGGAAAATCCATTATGCGG
GCCCACCCGAGTACAAAACGATGGTGAGGATAATGATCATGATGAGGAGG
AGGGTGATAATGAGAATGGTGATTACGACGATGGTCATTTAGTCTTGAAA
ACAGACAAG
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Coding sequence (CDS) from alignment at chr21:229975..233033-

>NO21G00680.1 ID=NO21G00680.1|Name=NO21G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=1647bp|location=Sequence derived from alignment at chr21:229975..233033- (Nannochloropsis oceanica)
ATGCCTTTACAGCCAGGTCGGTTCAAGTGTGTCAATGCCGCCTTGGTGCA
ACCAGTGTGGCTGCTACTCCTCCTGCTCCTTGCCCTGATCCTTGTAGTGC
CAAGCCGCACATTTACGCCCACTTCCTACGTCAGCAGTACCACGATCAGA
ACGAGTGCTTGGCAAGCGAAGCCTTTATTCACGACACGCACGTCCACCCC
ATGCCGTAGTACACGACAGTCGACACGCACGTCCACCCTCGTGCGCTGCT
GGGACAGTTTACAGCCATCCTCCACTCCCCCATCCACTAGCTCAGCCAGC
AAACCCCTCTCTATCTCCTCTCCGACCCTCCCCGTGGGAACTTGGCCTCC
GAAAGGTTTTCGGCCATTTAAATCCTTACGAGAAGTGTGCGGAAACGTCT
CACTAGAGTTGGATGAGGATCAACGGGCGCTCATCGGTCCTCCCACCTCC
CAATTTTTCGCGGGCTTTCGCCTGCGTGAGCTCGACGAGACCAATCAGAG
CACCTTTTTGAAGGAGGCAGGGCGCGTGCAACAAGGCCTCCGGGGCCTCG
TCTGGTTTGCCTACCTCCTATGGCCTTACATCGGCTTCGGAATCTTCTGC
TCGCTGATTGCCCAAGTCATCGTCTACAACAGGAATGGTCTTAGCGCGGA
GGACGCCACGTACCTCACACCCCTGGATGTGAAGGACTTTCCCGACTTGA
AGATCGTGCACGGATTCGTCGGCTCCATTCTCGGTTTCTCCATCGGCTTT
AGGACGAACGCTGCTTATGACCGCTACTATGAGGGTCGGAAGATTCTCAG
CACCATCCTCGAGAACAGCCGCTCCATCATTCGGGACGTCTACTCCTTTA
TCCTCAAGACCCCTTCCCCTCCCTCTTTCCCTCCCTCCCCCCCTCTCTCC
GCCCCTGACGACGCCGCGGTGGAGGTGGTGAGCGATGACATACGCCGACG
GCTCAACGTCCTCTTTGCTTTCGTCCGCCAGTCCGTTCGAGAGTCCCTCA
TCGGCTTCTCTCCCGACTCCGACATGGCGGCGGTGCCTTTCATCAACACC
ACCTACTACCTCGACCCCTCCTTCCCCCAGCTCCTCGATTTGCTGTCCAA
AGACGAGGCCATACGCTATGCCAGACTCTCCCCGCGGTCACGGCCAGGGG
CAGTGAGTGCGGAGATTAACATTATATTACAAATTCTGGGGGCGAGGATT
CAATACGTCGATGCTTTCTTGGGCAAGGTCCAGGGCCATCTGGGCCGCAT
CACAGAGGCCCATTCGACCATGCTCCGGATTCGCGATACCCCCGTGCCTT
ACCCCTACCTGCTCATCCTCAACGTGGCCACCTTCATCTTCGTGTACTCC
ACGCCCTTTTTGTACAACACCGGCATCGAGGGTCGGTACCTGGGCGTCCA
GCTTCTGGTGATTGCTTACTACGGAATTCTGAGCATCGGGCAAAGCATTG
AAAATCCCTACGCATGGGACACTTTCGACATTGATTTCGAGGACTTCGCG
ATTCAGCTCTCAAGGGACTTGTCGGCCACGGCCAGCTGTCTCAAAGATGA
CCGGTCGGCTTTCTTGCAGGAATTGGTGCATCCCCATGAGGAAGAGAAGG
AGGAGGAGGAGGAGGAGGAGGGAGGGAGGGAGGGAAGGGGAAAATAA
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Synonyms
Publications