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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr21 | genome | chr21:180056..182986 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G00520.1 vs.
Match: XP_004364751.1 (Brd8 protein [Capsaspora owczarzaki ATCC 30864]; KJE90587.1 Brd8 protein [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 77.4 bits (189), Expect = 2.300e-10 Identity = 52/144 (36.11%), Postives = 73/144 (50.69%), Query Frame = 0
Query: 403 PPLAAAKRRICMRVWNKANQHRVAGTFRHPVNEDDAPGYHKVIKEPLDLYLIKRRIDDGTIGSVSALGRALGVMCGNAMVFNNNDTPEYENAEILSKFCQEKI-----EEAKEEEEGIG-------EEEAELKEAKGGGRKGGR 535
PP AA ++ M VW + HR A F PV +D+ PGY VIK P+DL I++RIDDGTI S R + +M NA+++N+ D Y A + +E+I EA ++++G G A A G GGR
Sbjct: 357 PPTNAAWKKSIMIVWRNISNHRYANVFLRPVTDDEVPGYSSVIKRPMDLTTIRKRIDDGTIRSTRDFLRDIYLMFANALMYNDADHDVYLMAVEMRNDAREQILDFMETEASQQDDGSGGGHAASTTAAAASSGASAGTPSGGR 500
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G00520.1 ID=NO21G00520.1|Name=NO21G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2572bp
ATGGCTCCTGCCCCGACGGCCAACAGCACCGACCACCCCACCACCAGCAT
CACGGCAAGCACCATGGATGTGAAGGAGCTTCAGGCAGAGCTCTCCGAGA
TGGACGACTGTGTCAAATTCATGCAAGAAGAGATTGATATGCTTAAAAGC
GGGGCCTTAGACAGAAGGTTGAAGGAGGTAGGGGCGTATTCAGTCCCTGC
TACTTATAAGCGAGTCTTGGCTTTGGTAGAATTCCCTCCTCCCCCTGAGG
GACGAGAAAGTGGGAGTGAGGAAGGGGAAGAGGAGGAGGAAGGGAGCGCG
GCTGACAGTGAAGACGAGGAGGGGGGAGGGAGCGAGGAAGAAAGTGAAGA
GGGCAGTGAGGATGATGAGAGGGAAGAGGAAGACAAGAAGGTGGTGCCTC
GTTCCCGGAGGGGAAGTAGGGCGACAGAGCTGGACGAAAGCGATGCCGAA
GAGGAGGAAGGGGAGGGCGGAGAGGCGGGAGAGGAGGACGAAGGAGAAGG
GGGAGAAGATGGAGAAGAGAGGAGTGTGACCAGCAAGGGTGGGAGGGTAA
GGCGAGAGAGGGGGCCCAAAGCGGGGAGGAATGGAGTGAGGGAGGGTCGA
GGTGGTGGGGGAGGAGAGGGAGGTAAAAGCATGAGTGGTGCCAGTAGCGT
GGGCAGCACGGGAAGTAAGTCTGCAGCGAGGACAAAAAGAGGCATCTCTT
CGAGAACTGGGGGAGGAGGAGGGAGGAGGAGGAGGAGGAGAGGGGACGAA
GGAGGGAGTGACGAGGAGGCGGCGGAGGAGGGAGGGGAGCAGGAGGGGTT
GGAGGAGAGTGATGCCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGGAGCGGGACAAGAAGAGGAGGAG
GAGGAGGTCGAAGAGGAGGGCAGTCGTCGTGGGCGTCGGAAACGGGCGGG
GGGCAAGCCAACTGCTGCTGCTGCTGCTGCTGGCAAGAAGGGTGTAAAGA
AAGAAAAGCAAGGTGAGGAGGAGGAGGAAGAAGATGAAGAGGAAGAGGAG
GAGGAGGAGAAGGAGGAGGAAGAGGGAAATGAAGCCGAATCGGTCGCAAG
AGGGAAAAAACGCGTTTTAGCCCACAATAGAAAAGCAGCAGCTGCTGCTT
CTGATCCTCCTACCGCTACCAACTCCTCCTCCTCGGGAGGTGGTCGTCCC
TCCCTCCCTCCATTGGCTGCGGCCAAACGCCGCATATGCATGCGTGTGTG
GAACAAGGCTAACCAACACCGTGTCGCTGGGACGTTTCGACACCCAGTCA
ACGAGGACGACGCCCCGGGCTATCACAAGGTGATCAAAGAACCCTTGGAT
CTCTACCTTATCAAGCGAAGGATCGACGACGGCACGATTGGCTCCGTTTC
CGCCCTCGGGCGCGCCTTGGGTGTCATGTGCGGCAACGCCATGGTATTTA
ACAACAACGACACACCCGAGTATGAAAACGCGGAAATCCTGAGTAAATTT
TGTCAGGAAAAGATAGAAGAGGCGAAAGAGGAAGAGGAAGGCATTGGAGA
GGAGGAGGCGGAACTTAAGGAGGCCAAGGGAGGGGGGAGGAAGGGTGGGA
GGAGCAGGGAGGCAGAGGCGCTGAAAACTGATTTGAATAATAATATGTCG
CCCTTGCCCGACGCAGGGACGGGGAGGGCGAGGAGGCTGAGGGCAGGAGT
TGCAGCAATCTCGGCAGGAGTACCAGCTGTACAGGTCAAAAAAGAGGAGA
GACAGGAAGAGGGAGGAGGAGGAGGGAGGGGGAGGAGGGGGGGGGGCGGG
AGAGGGAGGAGAGGGGCTGAGGAGGAGGAGGATGGAGGGGAGGAAGAGGG
GGAGGAATTGGAGGAGGAGGATTCAGTTGTGGCGAAAGGAGGGGGAGGGC
GAGGAAGGAAAAGAGGAAGAAGAGGACGAGGTGGAGGACGGCCGAGAAAG
GTGATGGAGGTGGAGGATTCTGAGGAGGAGGGTGAGGAAGAGGAGGATGG
TGAGGAGGAGGAAGGTGGGGAGGAAGAAGAGGAGGAAGAAGAGGAGGAGG
AGGAGGATGGGGGGCGGGTGAGCAAGGGTGGGAGGAGGAGAAATCGCGTA
GCTGGGAGAGCAGCAACGGGCAAAGACGGTCGAGGCGGACGCGGCGGAGG
GAATAAGCGACGTAAGCGCACCGGGTCTGAGGATGTGGGTGTAGTGAATG
AGGAGGAGAAAGAAGAAGAGGAGGAGAAGGAGGAGAAGGAAAAAGATGAG
GAGGAGGAGGAAGAAGAGGAAGCGGAGGAAGAGGAAGCAATCTTGGGGAA
GCGGGCGACACGCGGGGGTGGGGACACGACGCCTGTGAAGAAGGGAGGAG
GTGGAAGAGGAGGAGAACGAGGGAGTGAACGAAAGGCGAAGAAGGAGGAT
GATAAGGGGGCGGCGGTCGCCATCAAGAAGGAAAGGGTTGGGCGCCGACG
GTGAGATTGTGACAAAAGTGCTTCATTTGTCATTGCTCATGGAGGGAGGG
TTGAACGGAGGGAAGGAGTAAGGATCAGTGAATCCAGAAAAAGAATTGAC
GAGATTGAGTTTGGCAGTGGAA back to topprotein sequence of NO21G00520.1 >NO21G00520.1-protein ID=NO21G00520.1-protein|Name=NO21G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=818bp
MAPAPTANSTDHPTTSITASTMDVKELQAELSEMDDCVKFMQEEIDMLKS
GALDRRLKEVGAYSVPATYKRVLALVEFPPPPEGRESGSEEGEEEEEGSA
ADSEDEEGGGSEEESEEGSEDDEREEEDKKVVPRSRRGSRATELDESDAE
EEEGEGGEAGEEDEGEGGEDGEERSVTSKGGRVRRERGPKAGRNGVREGR
GGGGGEGGKSMSGASSVGSTGSKSAARTKRGISSRTGGGGGRRRRRRGDE
GGSDEEAAEEGGEQEGLEESDAEEEEEEEEEEEEEEEEEEEEGAGQEEEE
EEVEEEGSRRGRRKRAGGKPTAAAAAAGKKGVKKEKQGEEEEEEDEEEEE
EEEKEEEEGNEAESVARGKKRVLAHNRKAAAAASDPPTATNSSSSGGGRP
SLPPLAAAKRRICMRVWNKANQHRVAGTFRHPVNEDDAPGYHKVIKEPLD
LYLIKRRIDDGTIGSVSALGRALGVMCGNAMVFNNNDTPEYENAEILSKF
CQEKIEEAKEEEEGIGEEEAELKEAKGGGRKGGRSREAEALKTDLNNNMS
PLPDAGTGRARRLRAGVAAISAGVPAVQVKKEERQEEGGGGGRGRRGGGG
RGRRGAEEEEDGGEEEGEELEEEDSVVAKGGGGRGRKRGRRGRGGGRPRK
VMEVEDSEEEGEEEEDGEEEEGGEEEEEEEEEEEEDGGRVSKGGRRRNRV
AGRAATGKDGRGGRGGGNKRRKRTGSEDVGVVNEEEKEEEEEKEEKEKDE
EEEEEEEAEEEEAILGKRATRGGGDTTPVKKGGGGRGGERGSERKAKKED
DKGAAVAIKKERVGRRR* back to topmRNA from alignment at chr21:180056..182986- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G00520.1 ID=NO21G00520.1|Name=NO21G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2931bp|location=Sequence derived from alignment at chr21:180056..182986- (Nannochloropsis oceanica)
ATGGCTCCTGCCCCGACGGCCAACAGCACCGACCACCCCACCACCAGCAT
CACGGCAAGCACCATGGATGTGAAGGAGCTTCAGGCAGAGCTCTCCGAGA
TGGACGACTGTGTCAAATTCATGCAAGAAGAGATTGATATGCTTAAAAGC
GGGGCCTTAGACAGAAGGTTGAAGGAGGTAGGGGCGTATTCAGTCCCTGC
TACTTATAAGCGAGTCTTGGCTTTGGTAGAATTCCCTCCTCCCCCTGAGG
GACGAGAAAGTGGGAGTGAGGAAGGGGAAGAGGAGGAGGAAGGGAGCGCG
GCTGACAGTGAAGACGAGGAGGGGGGAGGGAGCGAGGAAGAAAGTGAAGA
GGGCAGTGAGGATGATGAGAGGGAAGAGGAAGACAAGAAGGTGGTGCCTC
GTTCCCGGAGGGGAAGTAGGGCGACAGAGCTGGACGAAAGCGATGCCGAA
GAGGAGGAAGGGGAGGGCGGAGAGGCGGGAGAGGAGGACGAAGGAGAAGG
GGGAGAAGATGGAGAAGAGAGGAGTGTGACCAGCAAGGGTGGGAGGGTAA
GGCGAGAGAGGGGGCCCAAAGCGGGGAGGAATGGAGTGAGGGAGGGTCGA
GGTGGTGGGGGAGGAGAGGGAGGTAAAAGCATGAGTGGTGCCAGTAGCGT
GGGCAGCACGGGAAGTAAGTCTGCAGCGAGGACAAAAAGAGGCATCTCTT
CGAGAACTGGGGGAGGAGGAGGGAGGAGGAGGAGGAGGAGAGGGGACGAA
GGAGGGAGTGACGAGGAGGCGGCGGAGGAGGGAGGGGAGCAGGAGGGGTT
GGAGGAGAGTGATGCCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGGAGCGGGACAAGAAGAGGAGGAG
GAGGAGGTCGAAGAGGAGGGCAGTCGTCGTGGGCGTCGGAAACGGGCGGG
GGGCAAGCCAACTGCTGCTGCTGCTGCTGCTGGCAAGAAGGGTGTAAAGA
AAGAAAAGCAAGGTGAGGAGGAGGAGGAAGAAGATGAAGAGGAAGAGGAG
GAGGAGGAGAAGGAGGAGGAAGAGGGAAATGAAGCCGAATCGGTCGCAAG
AGGGAAAAAACGCGTTTTAGCCCACAATAGAAAAGCAGCAGCTGCTGCTT
CTGATCCTCCTACCGCTACCAACTCCTCCTCCTCGGGAGGTGGTCGTCCC
TCCCTCCCTCCATTGGCTGCGGCCAAACGCCGCATATGCATGCGTGTGTG
GAACAAGGCTAACCAACACCGTGTCGCTGGGACGTTTCGACACCCAGTCA
ACGAGGACGACGCCCCGGGCTATCACAAGGTAAGTCTTCCTTCCCTCCCT
CCCTCCCTGTCTCCTGCATGTATGCATGAATCTGTGTATGTGTGCTTGGA
AGCATTCAGACTGATCACCTGTCTCATGCATGTATGTAGATCATCTGACT
TAGTGGTAGTAATAAATCAGAAGATAAATCACTTGATGAATTGAAAGTAA
GATTTATATCGACGAGTGGGTAAATGGTAACATAAATGATTAAATGAATA
AGACAAAAGGTGCAAATGATCCCACCCAACAAACGATCTAATTAACAACA
TCCACACACAAATAAATAAATGAAAATAAACAAATGATAAGATAAGTAAT
CGAATAAATTCACACACAAATGAATGAAAAATACACAGGTGATCAAAGAA
CCCTTGGATCTCTACCTTATCAAGCGAAGGATCGACGACGGCACGATTGG
CTCCGTTTCCGCCCTCGGGCGCGCCTTGGGTGTCATGTGCGGCAACGCCA
TGGTATTTAACAACAACGACACACCCGAGTATGAAAACGCGGAAATCCTG
AGTAAATTTTGTCAGGAAAAGATAGAAGAGGCGAAAGAGGAAGAGGAAGG
CATTGGAGAGGAGGAGGCGGAACTTAAGGAGGCCAAGGGAGGGGGGAGGA
AGGGTGGGAGGAGCAGGGAGGCAGAGGCGCTGAAAACTGATTTGAATAAT
AATATGTCGCCCTTGCCCGACGCAGGGACGGGGAGGGCGAGGAGGCTGAG
GGCAGGAGTTGCAGCAATCTCGGCAGGAGTACCAGCTGTACAGGTCAAAA
AAGAGGAGAGACAGGAAGAGGGAGGAGGAGGAGGGAGGGGGAGGAGGGGG
GGGGGCGGGAGAGGGAGGAGAGGGGCTGAGGAGGAGGAGGATGGAGGGGA
GGAAGAGGGGGAGGAATTGGAGGAGGAGGATTCAGTTGTGGCGAAAGGAG
GGGGAGGGCGAGGAAGGAAAAGAGGAAGAAGAGGACGAGGTGGAGGACGG
CCGAGAAAGGTGATGGAGGTGGAGGATTCTGAGGAGGAGGGTGAGGAAGA
GGAGGATGGTGAGGAGGAGGAAGGTGGGGAGGAAGAAGAGGAGGAAGAAG
AGGAGGAGGAGGAGGATGGGGGGCGGGTGAGCAAGGGTGGGAGGAGGAGA
AATCGCGTAGCTGGGAGAGCAGCAACGGGCAAAGACGGTCGAGGCGGACG
CGGCGGAGGGAATAAGCGACGTAAGCGCACCGGGTCTGAGGATGTGGGTG
TAGTGAATGAGGAGGAGAAAGAAGAAGAGGAGGAGAAGGAGGAGAAGGAA
AAAGATGAGGAGGAGGAGGAAGAAGAGGAAGCGGAGGAAGAGGAAGCAAT
CTTGGGGAAGCGGGCGACACGCGGGGGTGGGGACACGACGCCTGTGAAGA
AGGGAGGAGGTGGAAGAGGAGGAGAACGAGGGAGTGAACGAAAGGCGAAG
AAGGAGGATGATAAGGGGGCGGCGGTCGCCATCAAGAAGGAAAGGGTTGG
GCGCCGACGGTGAGATTGTGACAAAAGTGCTTCATTTGTCATTGCTCATG
GAGGGAGGGTTGAACGGAGGGAAGGAGTAAGGATCAGTGAATCCAGAAAA
AGAATTGACGAGATTGAGTTTGGCAGTGGAA back to topCoding sequence (CDS) from alignment at chr21:180056..182986- >NO21G00520.1 ID=NO21G00520.1|Name=NO21G00520.1|organism=Nannochloropsis oceanica|type=CDS|length=2454bp|location=Sequence derived from alignment at chr21:180056..182986- (Nannochloropsis oceanica)
ATGGCTCCTGCCCCGACGGCCAACAGCACCGACCACCCCACCACCAGCAT
CACGGCAAGCACCATGGATGTGAAGGAGCTTCAGGCAGAGCTCTCCGAGA
TGGACGACTGTGTCAAATTCATGCAAGAAGAGATTGATATGCTTAAAAGC
GGGGCCTTAGACAGAAGGTTGAAGGAGGTAGGGGCGTATTCAGTCCCTGC
TACTTATAAGCGAGTCTTGGCTTTGGTAGAATTCCCTCCTCCCCCTGAGG
GACGAGAAAGTGGGAGTGAGGAAGGGGAAGAGGAGGAGGAAGGGAGCGCG
GCTGACAGTGAAGACGAGGAGGGGGGAGGGAGCGAGGAAGAAAGTGAAGA
GGGCAGTGAGGATGATGAGAGGGAAGAGGAAGACAAGAAGGTGGTGCCTC
GTTCCCGGAGGGGAAGTAGGGCGACAGAGCTGGACGAAAGCGATGCCGAA
GAGGAGGAAGGGGAGGGCGGAGAGGCGGGAGAGGAGGACGAAGGAGAAGG
GGGAGAAGATGGAGAAGAGAGGAGTGTGACCAGCAAGGGTGGGAGGGTAA
GGCGAGAGAGGGGGCCCAAAGCGGGGAGGAATGGAGTGAGGGAGGGTCGA
GGTGGTGGGGGAGGAGAGGGAGGTAAAAGCATGAGTGGTGCCAGTAGCGT
GGGCAGCACGGGAAGTAAGTCTGCAGCGAGGACAAAAAGAGGCATCTCTT
CGAGAACTGGGGGAGGAGGAGGGAGGAGGAGGAGGAGGAGAGGGGACGAA
GGAGGGAGTGACGAGGAGGCGGCGGAGGAGGGAGGGGAGCAGGAGGGGTT
GGAGGAGAGTGATGCCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGGAGCGGGACAAGAAGAGGAGGAG
GAGGAGGTCGAAGAGGAGGGCAGTCGTCGTGGGCGTCGGAAACGGGCGGG
GGGCAAGCCAACTGCTGCTGCTGCTGCTGCTGGCAAGAAGGGTGTAAAGA
AAGAAAAGCAAGGTGAGGAGGAGGAGGAAGAAGATGAAGAGGAAGAGGAG
GAGGAGGAGAAGGAGGAGGAAGAGGGAAATGAAGCCGAATCGGTCGCAAG
AGGGAAAAAACGCGTTTTAGCCCACAATAGAAAAGCAGCAGCTGCTGCTT
CTGATCCTCCTACCGCTACCAACTCCTCCTCCTCGGGAGGTGGTCGTCCC
TCCCTCCCTCCATTGGCTGCGGCCAAACGCCGCATATGCATGCGTGTGTG
GAACAAGGCTAACCAACACCGTGTCGCTGGGACGTTTCGACACCCAGTCA
ACGAGGACGACGCCCCGGGCTATCACAAGGTGATCAAAGAACCCTTGGAT
CTCTACCTTATCAAGCGAAGGATCGACGACGGCACGATTGGCTCCGTTTC
CGCCCTCGGGCGCGCCTTGGGTGTCATGTGCGGCAACGCCATGGTATTTA
ACAACAACGACACACCCGAGTATGAAAACGCGGAAATCCTGAGTAAATTT
TGTCAGGAAAAGATAGAAGAGGCGAAAGAGGAAGAGGAAGGCATTGGAGA
GGAGGAGGCGGAACTTAAGGAGGCCAAGGGAGGGGGGAGGAAGGGTGGGA
GGAGCAGGGAGGCAGAGGCGCTGAAAACTGATTTGAATAATAATATGTCG
CCCTTGCCCGACGCAGGGACGGGGAGGGCGAGGAGGCTGAGGGCAGGAGT
TGCAGCAATCTCGGCAGGAGTACCAGCTGTACAGGTCAAAAAAGAGGAGA
GACAGGAAGAGGGAGGAGGAGGAGGGAGGGGGAGGAGGGGGGGGGGCGGG
AGAGGGAGGAGAGGGGCTGAGGAGGAGGAGGATGGAGGGGAGGAAGAGGG
GGAGGAATTGGAGGAGGAGGATTCAGTTGTGGCGAAAGGAGGGGGAGGGC
GAGGAAGGAAAAGAGGAAGAAGAGGACGAGGTGGAGGACGGCCGAGAAAG
GTGATGGAGGTGGAGGATTCTGAGGAGGAGGGTGAGGAAGAGGAGGATGG
TGAGGAGGAGGAAGGTGGGGAGGAAGAAGAGGAGGAAGAAGAGGAGGAGG
AGGAGGATGGGGGGCGGGTGAGCAAGGGTGGGAGGAGGAGAAATCGCGTA
GCTGGGAGAGCAGCAACGGGCAAAGACGGTCGAGGCGGACGCGGCGGAGG
GAATAAGCGACGTAAGCGCACCGGGTCTGAGGATGTGGGTGTAGTGAATG
AGGAGGAGAAAGAAGAAGAGGAGGAGAAGGAGGAGAAGGAAAAAGATGAG
GAGGAGGAGGAAGAAGAGGAAGCGGAGGAAGAGGAAGCAATCTTGGGGAA
GCGGGCGACACGCGGGGGTGGGGACACGACGCCTGTGAAGAAGGGAGGAG
GTGGAAGAGGAGGAGAACGAGGGAGTGAACGAAAGGCGAAGAAGGAGGAT
GATAAGGGGGCGGCGGTCGCCATCAAGAAGGAAAGGGTTGGGCGCCGACG
GTGA back to top
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