NO21G00370.1, NO21G00370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00370.1
Unique NameNO21G00370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1494
Alignment locationchr21:113508..115111 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:113508..115111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00370.1 vs.
Match: EWM20681.1 (short-chain dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 690.6 bits (1781), Expect = 3.500e-195
Identity = 363/495 (73.33%), Postives = 415/495 (83.84%), Query Frame = 0 
Query:    8 RRVLDLLPLTLLSLCIVLVQAGAFSIRSGGCRMGAAATSGG--IGLPIRSALRCLGMTPPNISLLLGRKGGAASSSDESSREIASSWMRTREVR-NGYTSDGRRRLLSMAELFASKDSSNEKKSLTDGTFAASGNKNLFSRDGVFKLAGYAAVAYIGKQFFNGGRYDDEPDLSGKVAVITGGNSGIGKETAIRLATLGARVLIACRNSEKGEAAVRDIVNAVSPSSTVEG--ASRKKNAAPPQVESLVMDLSDLKSIDRFATELNKHVDKVDILVNNAGVMAVSNLERTQDGFERQLGVNHLGHFHLTNRLFDLLLKGAATRDGARIVNVASEAHRFGGLDLQDPNYLTREYKKWEAYGQSKLANILFTRELHRRLAEKGMDKKVLALCCHPGVVRTELGRYLIDDIPSVGKVALAPVALAGWYFTKSPKQGSQTQVYLAASPTLKDEAERGAAVGGTYFSDCRPKKTTKEAEDLDAAGKLWKLSEKLTGSSFSV 498
            +R ++ + L +LSL  VLVQA AFS   GG  +G+ AT  G    +P   +  C+ M  P   LL   +GGA + + E  R++ASS +R REVR NGYT+DGRRRLLSM ELF  ++ S E    + G F+A+G++ LFSRDG  +L GYAAVAYIGKQ FNGGRYD+ PDL+G+VAVITGGN+GIGKETAIRLA++GARVLIACRN EKGE AVRDI++AVSP S  +   + RK   +PPQVESLV+DL+DLKSIDRFATEL K VD+VD+L+NNAGVMAVS LERT+DGFER LGVNHLGHFHLTNRLFDLLLKG +TR+G RIVNVASEAHRFGGLD QDPNYL REYKKWEAYGQSKLANILFTRELHRRLAEKG+DK++LA+CCHPGVVRTELGRYLIDDIPSVGKVALAP+ALAGWYFTKSPKQGSQTQVYLAASPTLK+EAE+GAAVGGTYFSDCRPKKTTKEAEDL  AG+LWKLSEKLTGSSFSV
Sbjct:   13 QRGIERMLLAVLSLGTVLVQAKAFSFHGGG-GVGSCATKVGSRFVVPTLFSPGCMSMARPVTPLLASLRGGATNGA-EGGRDVASSRVRVREVRRNGYTADGRRRLLSMRELFGHQEGSPEGNDSSGGLFSAAGSQKLFSRDGALRLVGYAAVAYIGKQVFNGGRYDENPDLAGRVAVITGGNTGIGKETAIRLASMGARVLIACRNPEKGETAVRDILDAVSPPSATDAPVSGRKAINSPPQVESLVLDLADLKSIDRFATELGKRVDRVDMLINNAGVMAVSRLERTKDGFERHLGVNHLGHFHLTNRLFDLLLKGGSTREGVRIVNVASEAHRFGGLDPQDPNYLRREYKKWEAYGQSKLANILFTRELHRRLAEKGLDKRILAVCCHPGVVRTELGRYLIDDIPSVGKVALAPLALAGWYFTKSPKQGSQTQVYLAASPTLKEEAEQGAAVGGTYFSDCRPKKTTKEAEDLALAGELWKLSEKLTGSSFSV 505
The following BLAST results are available for this feature:
BLAST of NO21G00370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20681.13.500e-19573.33short-chain dehydrogenase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00370NO21G00370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00370.1NO21G00370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00370.1.cds1NO21G00370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00370.1.cds2NO21G00370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00370.1 ID=NO21G00370.1|Name=NO21G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp
ATGCCCCAGGTCCTTCTCCCCCGGCGTGTCCTAGACCTCCTGCCCTTAAC
CCTCCTGTCCTTATGCATTGTGTTGGTGCAGGCAGGGGCATTTTCTATCC
GCAGCGGCGGTTGCAGGATGGGTGCTGCGGCTACTTCTGGCGGAATCGGC
CTTCCCATCCGCTCTGCCTTGCGTTGCCTAGGCATGACGCCCCCAAACAT
CTCCCTGCTGCTGGGCCGCAAGGGTGGGGCGGCGAGCAGCAGTGATGAGA
GTAGCCGCGAGATAGCTTCCTCGTGGATGCGTACCCGGGAGGTGCGCAAT
GGTTATACGTCGGACGGGCGTCGTCGCCTCCTGTCGATGGCTGAGCTGTT
CGCCAGCAAGGACAGCAGCAACGAGAAGAAGAGCCTCACCGATGGGACTT
TTGCTGCATCGGGCAACAAAAATCTCTTTTCTCGGGATGGAGTCTTCAAG
TTGGCGGGCTATGCGGCCGTGGCTTACATTGGCAAACAATTTTTCAACGG
GGGCCGGTACGATGACGAACCGGATCTGAGCGGCAAGGTGGCGGTCATCA
CAGGGGGTAATTCGGGCATCGGTAAGGAGACTGCCATTCGCCTTGCCACG
CTAGGAGCCCGTGTTTTGATCGCGTGCCGCAACTCTGAGAAGGGCGAGGC
GGCGGTGCGGGACATAGTGAACGCCGTTTCCCCCTCCTCTACAGTGGAAG
GCGCGAGCCGAAAGAAGAATGCCGCCCCGCCACAGGTGGAGAGCTTGGTG
ATGGACCTGTCGGACTTGAAAAGCATCGATCGTTTTGCGACGGAGTTGAA
CAAGCACGTGGATAAGGTCGATATTTTGGTGAACAATGCGGGGGTCATGG
CTGTGAGTAACTTAGAGCGGACCCAGGATGGCTTCGAGCGCCAATTGGGT
GTGAACCACTTAGGGCATTTCCACCTGACGAACCGTCTGTTTGACTTACT
GCTTAAAGGTGCGGCGACACGGGATGGGGCGCGGATTGTGAATGTGGCGA
GTGAAGCGCATCGTTTTGGAGGTTTGGACTTGCAGGACCCAAACTATCTG
ACCAGGGAATACAAAAAGTGGGAGGCGTATGGGCAAAGCAAACTGGCCAA
CATTCTGTTCACCCGCGAGCTGCACCGGCGCCTGGCCGAGAAGGGCATGG
ACAAAAAGGTGTTGGCTTTATGTTGTCATCCTGGGGTGGTCCGCACGGAA
CTAGGCCGGTATTTGATTGATGATATTCCCAGCGTCGGAAAGGTGGCCTT
GGCCCCCGTAGCGCTGGCTGGCTGGTACTTCACCAAGAGTCCCAAGCAAG
GCTCGCAAACACAGGTCTACCTGGCCGCGAGCCCAACGCTGAAAGACGAG
GCGGAACGAGGAGCAGCGGTGGGCGGGACGTACTTCTCCGACTGCCGTCC
CAAGAAGACGACTAAGGAGGCCGAAGATTTGGACGCGGCGGGCAAGCTTT
GGAAACTGAGTGAAAAGCTCACAGGGTCATCGTTCTCAGTTTAG
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protein sequence of NO21G00370.1

>NO21G00370.1-protein ID=NO21G00370.1-protein|Name=NO21G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=498bp
MPQVLLPRRVLDLLPLTLLSLCIVLVQAGAFSIRSGGCRMGAAATSGGIG
LPIRSALRCLGMTPPNISLLLGRKGGAASSSDESSREIASSWMRTREVRN
GYTSDGRRRLLSMAELFASKDSSNEKKSLTDGTFAASGNKNLFSRDGVFK
LAGYAAVAYIGKQFFNGGRYDDEPDLSGKVAVITGGNSGIGKETAIRLAT
LGARVLIACRNSEKGEAAVRDIVNAVSPSSTVEGASRKKNAAPPQVESLV
MDLSDLKSIDRFATELNKHVDKVDILVNNAGVMAVSNLERTQDGFERQLG
VNHLGHFHLTNRLFDLLLKGAATRDGARIVNVASEAHRFGGLDLQDPNYL
TREYKKWEAYGQSKLANILFTRELHRRLAEKGMDKKVLALCCHPGVVRTE
LGRYLIDDIPSVGKVALAPVALAGWYFTKSPKQGSQTQVYLAASPTLKDE
AERGAAVGGTYFSDCRPKKTTKEAEDLDAAGKLWKLSEKLTGSSFSV*
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mRNA from alignment at chr21:113508..115111+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00370.1 ID=NO21G00370.1|Name=NO21G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1604bp|location=Sequence derived from alignment at chr21:113508..115111+ (Nannochloropsis oceanica)
ATGCCCCAGGTCCTTCTCCCCCGGCGTGTCCTAGACCTCCTGCCCTTAAC
CCTCCTGTCCTTATGCATTGTGTTGGTGCAGGCAGGGGCATTTTCTATCC
GCAGCGGCGGTTGCAGGATGGGTGCTGCGGCTACTTCTGGCGGAATCGGC
CTTCCCATCCGCTCTGCCTTGCGTTGCCTAGGCATGACGCCCCCAAACAT
CTCCCTGCTGCTGGGCCGCAAGGGTGGGGCGGCGAGCAGCAGTGATGAGA
GTAGCCGCGAGATAGCTTCCTCGTGGATGCGTACCCGGGAGGTGCGCAAT
GGTTATACGTCGGACGGGCGTCGTCGCCTCCTGTCGATGGCTGAGCTGTT
CGCCAGCAAGGACAGCAGCAACGAGAAGAAGAGCCTCACCGATGGGACTT
TTGCTGCATCGGGCAACAAAAATCTCTTTTCTCGGGATGGAGTCTTCAAG
TTGGCGGGCTATGCGGCCGTGGCTTACATTGGCAAACAATTTTTCAACGG
GGGCCGGTACGATGACGAACCGGATCTGAGCGGCAAGGTGGCGGTCATCA
CAGGGGGTAATTCGGGCATCGGTAAGGAGACTGCCATTCGCCTTGCCACG
CTAGGAGCCCGTGTTTTGATCGCGTGCCGCAACTCTGAGAAGGGCGAGGC
GGCGGTGCGGGACATAGTGAACGCCGTTTCCCCCTCCTCTACAGTGGAAG
GCGCGAGCCGAAAGAAGAATGCCGCCCCGCCACAGGTGGAGAGCTTGGTG
ATGGACCTGTCGGACTTGAAAAGCATCGATCGTTTTGCGACGGAGTTGAA
CAAGCACGTGGATAAGGTCGATATTTTGGTGAACAATGCGGGGGTCATGG
CTGTGAGTAACTTAGAGCGGACCCAGGATGGCTTCGAGCGCCAATTGGGT
GTGAACCACTTAGGGCATTTCCACCTGACGAACCGTCTGTTTGACTTACT
GCTTAAAGGTGCGGCGACACGGGATGGGGCGCGGATTGTGAATGTGGCGA
GTGAAGCGCATCGTTTTGGAGGTTTGGACTTGCAGGACCCAAACTATCTG
ACCAGGGAATACAAAAAGTGGGAGGCGTATGGGCAAAGCAAACTGGCCAA
CATTCTGTTCACCCGCGAGCTGCACCGGCGCCTGGCCGAGAAGGGCATGG
ACAAAAAGGTGTTGGCTTTATGTTGTCATCCTGGGGTGGTCCGCACGGAA
CTAGGCCGGTATTTGATTGATGATATTCCCAGCGTCGGAAAGGTGGCCTT
GGCCCCCGTAGCGCTGGCTGGCTGGTACTTCACCAAGAGTCCCAAGCAAG
GGTAGGTTGGATGTCTTAATTAATCCCAAGTGAGCAACACTTTGTCAATT
AGTGCATCTCTCACACATATATATCTTTCTTCCTCTCCCAATCCCTCATC
CCCTACAACAGCTCGCAAACACAGGTCTACCTGGCCGCGAGCCCAACGCT
GAAAGACGAGGCGGAACGAGGAGCAGCGGTGGGCGGGACGTACTTCTCCG
ACTGCCGTCCCAAGAAGACGACTAAGGAGGCCGAAGATTTGGACGCGGCG
GGCAAGCTTTGGAAACTGAGTGAAAAGCTCACAGGGTCATCGTTCTCAGT
TTAG
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Coding sequence (CDS) from alignment at chr21:113508..115111+

>NO21G00370.1 ID=NO21G00370.1|Name=NO21G00370.1|organism=Nannochloropsis oceanica|type=CDS|length=1494bp|location=Sequence derived from alignment at chr21:113508..115111+ (Nannochloropsis oceanica)
ATGCCCCAGGTCCTTCTCCCCCGGCGTGTCCTAGACCTCCTGCCCTTAAC
CCTCCTGTCCTTATGCATTGTGTTGGTGCAGGCAGGGGCATTTTCTATCC
GCAGCGGCGGTTGCAGGATGGGTGCTGCGGCTACTTCTGGCGGAATCGGC
CTTCCCATCCGCTCTGCCTTGCGTTGCCTAGGCATGACGCCCCCAAACAT
CTCCCTGCTGCTGGGCCGCAAGGGTGGGGCGGCGAGCAGCAGTGATGAGA
GTAGCCGCGAGATAGCTTCCTCGTGGATGCGTACCCGGGAGGTGCGCAAT
GGTTATACGTCGGACGGGCGTCGTCGCCTCCTGTCGATGGCTGAGCTGTT
CGCCAGCAAGGACAGCAGCAACGAGAAGAAGAGCCTCACCGATGGGACTT
TTGCTGCATCGGGCAACAAAAATCTCTTTTCTCGGGATGGAGTCTTCAAG
TTGGCGGGCTATGCGGCCGTGGCTTACATTGGCAAACAATTTTTCAACGG
GGGCCGGTACGATGACGAACCGGATCTGAGCGGCAAGGTGGCGGTCATCA
CAGGGGGTAATTCGGGCATCGGTAAGGAGACTGCCATTCGCCTTGCCACG
CTAGGAGCCCGTGTTTTGATCGCGTGCCGCAACTCTGAGAAGGGCGAGGC
GGCGGTGCGGGACATAGTGAACGCCGTTTCCCCCTCCTCTACAGTGGAAG
GCGCGAGCCGAAAGAAGAATGCCGCCCCGCCACAGGTGGAGAGCTTGGTG
ATGGACCTGTCGGACTTGAAAAGCATCGATCGTTTTGCGACGGAGTTGAA
CAAGCACGTGGATAAGGTCGATATTTTGGTGAACAATGCGGGGGTCATGG
CTGTGAGTAACTTAGAGCGGACCCAGGATGGCTTCGAGCGCCAATTGGGT
GTGAACCACTTAGGGCATTTCCACCTGACGAACCGTCTGTTTGACTTACT
GCTTAAAGGTGCGGCGACACGGGATGGGGCGCGGATTGTGAATGTGGCGA
GTGAAGCGCATCGTTTTGGAGGTTTGGACTTGCAGGACCCAAACTATCTG
ACCAGGGAATACAAAAAGTGGGAGGCGTATGGGCAAAGCAAACTGGCCAA
CATTCTGTTCACCCGCGAGCTGCACCGGCGCCTGGCCGAGAAGGGCATGG
ACAAAAAGGTGTTGGCTTTATGTTGTCATCCTGGGGTGGTCCGCACGGAA
CTAGGCCGGTATTTGATTGATGATATTCCCAGCGTCGGAAAGGTGGCCTT
GGCCCCCGTAGCGCTGGCTGGCTGGTACTTCACCAAGAGTCCCAAGCAAG
GCTCGCAAACACAGGTCTACCTGGCCGCGAGCCCAACGCTGAAAGACGAG
GCGGAACGAGGAGCAGCGGTGGGCGGGACGTACTTCTCCGACTGCCGTCC
CAAGAAGACGACTAAGGAGGCCGAAGATTTGGACGCGGCGGGCAAGCTTT
GGAAACTGAGTGAAAAGCTCACAGGGTCATCGTTCTCAGTTTAG
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Synonyms
Publications