NO21G00210.1, NO21G00210.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO21G00210.1
Unique Name	NO21G00210.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2344
Alignment location	chr21:63311..66096 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr21	genome	chr21:63311..66096 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO21G00210.1 vs.
Match: EWM22539.1 (transcription initiation factor TFIIH subunit H1 [Nannochloropsis gaditana])

HSP 1 Score: 240.4 bits (612), Expect = 1.800e-59
Identity = 123/153 (80.39%), Postives = 133/153 (86.93%), Query Frame = 0

Query:  195 MDEMERETRRKLLAENPDLREQHTQMVGDGLIDEEDFWNARRKLLLDEEGRRRGKQTGLPSNILAEIEARAMEGGSEGGKEGGKGGGGGGGGGKTTICLKARDVQFLFELYPALKELYQKKVPEEMEERVFWSQVLRSIQFHKQRFEAHIEDE 348
            MD MERETRR+LL  NP+LREQHTQMVG+GLIDEEDFWNARR+LL++E+G+ RGKQ GLPSNILAEIEA+AMEGG EGGKEGGK           +ICLKARDVQFLF LYPALK LYQKKVPEEMEER FWSQVLRSIQFHKQRFEAHIEDE
Sbjct:    1 MDTMERETRRRLLMANPELREQHTQMVGEGLIDEEDFWNARRRLLVEEQGKTRGKQVGLPSNILAEIEAQAMEGGKEGGKEGGK---------PPSICLKARDVQFLFALYPALKTLYQKKVPEEMEERTFWSQVLRSIQFHKQRFEAHIEDE 144

The following BLAST results are available for this feature:

BLAST of NO21G00210.1 vs.

BLAST of NO21G00210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
EWM22539.1	1.800e-59	80.39	transcription initiation factor TFIIH subunit H1 [...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO21G00210	NO21G00210	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO21G00210.1	NO21G00210.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO21G00210.1.cds1	NO21G00210.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G00210.1.cds2	NO21G00210.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G00210.1.cds3	NO21G00210.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G00210.1.cds4	NO21G00210.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr21:63311..66096-
coding sequence from alignment at chr21:63311..66096-

mRNA sequence

>NO21G00210.1 ID=NO21G00210.1|Name=NO21G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2344bp
GAAAAGCTTCTTCCATAAAGTATAGGGTCAGTGTAAGCTCCCGCCTGGCA
GCAGCAGCATCATTACGGCCCCCTGCTGTCCGCCGTCCGTATCTCAAGGC
GGAGGCAAAGGTAGCAACCGCGCGCTGAGCACTGGAAATAGAAACCACTA
ACAGGAGGAGTAGAGTCTTGGTTTATTTGGTTCTTCATCATTTGCTCCAG
CACAAGAACAGAGCGTATGAACCATGATGGCCACGCATGACCTCTGGAAG
GCCCGATGCGAGATGGGCAAGAAGAAAGGTGTCATCACCCTGGCGGATGA
CGGTCTCTACTGGCAGCAGGACGGCTCCTCCTCCCCTAGCAAGCTCCTCG
CGTGGAACGACGTGAGCCAGCACATGATCAGCAAGCCCCCTCGTGCCATG
GTACGTGTGGAGCTAGCTCGTGGAGGGGACGTGCGTTTCGAGGTCTCTCC
GCTGCCTTCTACAGCGGAAGGAGGAGGGGGAGGGGAAGGAGGAGAGAAAG
GGGGAGGGCAGCAGACAGCCCGGGGCTTGTGTGAGGCGGCCAAGGAAGTG
ATTGGTGCTGCCCGCCGGCAGGCACGAGCAGCTGTCGCCTCGTCCTCGTC
TTCCTCTGCTGCTGGTACTCCTGCAAATGAAGGAGGGAAAGGGGGAAAGG
GGGGAAAAGCAGACAACAGCAGCAGCAGCAGCAGCAGCGGGGGCGGCGGA
GGTAGTTCTGCAGGGTGGAGAAGCGACGAGTTGCAGCGGAAGGCAGCTGT
AGCGAAAGGAAGGGCCGAAATTGCAAAGACTACGGCCTCTCAACTGAGGG
CGAGGATGGACGAGATGGAAAGGGAGACAAGGAGGAAGCTGCTGGCAGAG
AACCCGGACTTGAGGGAGCAGCACACGCAGATGGTTGGCGACGGTTTGAT
CGACGAAGAAGACTTTTGGAACGCCCGTCGGAAGCTGCTTCTGGACGAGG
AGGGCCGGCGGAGGGGAAAACAGACGGGGCTACCCTCCAATATACTCGCG
GAGATCGAGGCACGAGCCATGGAGGGAGGGTCAGAGGGGGGGAAGGAGGG
GGGGAAAGGAGGAGGAGGAGGAGGAGGGGGAGGGAAGACAACCATTTGCT
TGAAGGCGCGAGACGTTCAATTTTTGTTCGAGCTCTATCCGGCTTTGAAA
GAGCTGTACCAGAAGAAGGTGCCAGAGGAGATGGAGGAGAGAGTGTTCTG
GTCGCAGGTCTTAAGGAGCATTCAGTTCCATAAGCAACGGTTCGAGGCCC
ATATCGAGGACGAATTCTCCCGAGCCCGGGAATTAGGGGGAGGAGGGGGA
GGAGGAGGAGGGGGAGGAGGGAGGGAGGGATGGAAGGAGGGAGGAAAGGA
TGGGGGAGAGAAGGCTCGGAATAGCCTGTGGAGAGAGGTGGATCCCGTCT
TTGACTTGATGTCGGGGCAAGGTGCCGAGGGAGGGAGCTGGGGAGGGAGT
ACAAGCAGTGGGATGCTGGGAGGGAGGGGGGCAGGAAGGGAGGAGGAGAC
GGGAGGCAGCAAGGCAGGTGAGGAGGTGGTGAAGAAGTACAACCGTCAGG
CGTCGCTGTTGGTGAAGAGCAGGCACCGGACGACGGTGGATGAACACGTG
GACATGCCGGACTTGCATGCTTGGTTTGGGGAGATGGAGGGGGAGGCGGG
GGAGGAAGGGGGAGGAGAAGAGGGAGGGAGGGAGGGAGGGAGGAGAAGGA
AGTTCGCACGGTTGGAGTTGAGGAATCGGGGTCTATATACCTCGGCCATG
GGAGGGGAGGAAGAGGGGGAGGGGGAGGAAGGGGGGGAGGAAGGGGGGCA
GGGATGGAGGGAGGCGGACATGTCGAAGTTTGATTTGCGGAGGTACACGC
CAGATTTACCATCGGCCCTCCCTTCCTCCCTCGCGGCTGCGGCGGTTTTG
GGGGAGCTAACGGCCAAGGTGTTGAAGGAGGGGGAAGGAGGGAGGGAAGG
AGGGGTGGAGGGGGAGGAGAGGGAGAGGGAGGTGCAGAAGGACCTGCCTA
GGGCGTACGTGGAGTTTGTGAGGGTATCGGAATTGCTCAGACATTTTCAC
GCGTTCTTCTTGCGGCTGAAGAGGGAAGGAGGGAGGGAGGAGGGGAGGGA
GGAGGTGAAGCAAAAGCTGGAGAGGTTGGTGGCGAAGATCGAGAGCAAGC
AGAAGGAGCTGGCCAGGACGAGGAGGGGATTGTGGAATGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGGGGCACCTAGGCTAGCGGCGATGCT
GCTGCCGTTTCAGAGGCAGTTGGAGCATGCCATGGACCTGTACGACTCGT
ATTTTAGAGATTTGGCCACCACTGCCCCTGCTATTACTTTTTAG

protein sequence of NO21G00210.1

>NO21G00210.1-protein ID=NO21G00210.1-protein|Name=NO21G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=707bp
MMATHDLWKARCEMGKKKGVITLADDGLYWQQDGSSSPSKLLAWNDVSQH
MISKPPRAMVRVELARGGDVRFEVSPLPSTAEGGGGGEGGEKGGGQQTAR
GLCEAAKEVIGAARRQARAAVASSSSSSAAGTPANEGGKGGKGGKADNSS
SSSSSGGGGGSSAGWRSDELQRKAAVAKGRAEIAKTTASQLRARMDEMER
ETRRKLLAENPDLREQHTQMVGDGLIDEEDFWNARRKLLLDEEGRRRGKQ
TGLPSNILAEIEARAMEGGSEGGKEGGKGGGGGGGGGKTTICLKARDVQF
LFELYPALKELYQKKVPEEMEERVFWSQVLRSIQFHKQRFEAHIEDEFSR
ARELGGGGGGGGGGGGREGWKEGGKDGGEKARNSLWREVDPVFDLMSGQG
AEGGSWGGSTSSGMLGGRGAGREEETGGSKAGEEVVKKYNRQASLLVKSR
HRTTVDEHVDMPDLHAWFGEMEGEAGEEGGGEEGGREGGRRRKFARLELR
NRGLYTSAMGGEEEGEGEEGGEEGGQGWREADMSKFDLRRYTPDLPSALP
SSLAAAAVLGELTAKVLKEGEGGREGGVEGEEREREVQKDLPRAYVEFVR
VSELLRHFHAFFLRLKREGGREEGREEVKQKLERLVAKIESKQKELARTR
RGLWNEGGREGGREGGRGAPRLAAMLLPFQRQLEHAMDLYDSYFRDLATT
APAITF*

mRNA from alignment at chr21:63311..66096-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO21G00210.1 ID=NO21G00210.1|Name=NO21G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2786bp|location=Sequence derived from alignment at chr21:63311..66096- (Nannochloropsis oceanica)
GAAAAGCTTCTTCCATAAAGTATAGGGTCAGTGTAAGCTCCCGCCTGGCA
GCAGCAGCATCATTACGGCCCCCTGCTGTCCGCCGTCCGTATCTCAAGGC
GGAGGCAAAGGTAGCAACCGCGCGCTGAGCACTGGAAATAGAAACCACTA
ACAGGAGGAGTAGAGTCTTGGTTTATTTGGTTCTTCATCATTTGCTCCAG
CACAAGAACAGAGCGTATGAACCATGATGGCCACGCATGACCTCTGGAAG
GCCCGATGCGAGATGGGCAAGAAGAAAGGTGTCATCACCCTGGCGGATGA
CGGTCTCTACTGGCAGCAGGACGGGTACGTGTGGGTATGAAAATATATCT
CGCTGTCTCACGCATGCTCATTTTCTTCTGTCCCTATTTCCCTCGCTTCC
CTCCGTCAGCTCCTCCTCCCCTAGCAAGCTCCTCGCGTGGAACGACGTGA
GCCAGCACATGATCAGCAAGCCCCCTCGTGCCATGGTACGTGTGGAGCTA
GCTCGTGGAGGGGACGTGCGTTTCGAGGTCTCTCCGCTGCCTTCTACAGC
GGAAGGAGGAGGGGGAGGGGAAGGAGGAGAGAAAGGGGGAGGGCAGCAGA
CAGCCCGGGGCTTGTGTGAGGCGGCCAAGGAAGTGATTGGTGCTGCCCGC
CGGCAGGCACGAGCAGCTGTCGCCTCGTCCTCGTCTTCCTCTGCTGCTGG
TACTCCTGCAAATGAAGGAGGGAAAGGGGGAAAGGGGGGAAAAGCAGACA
ACAGCAGCAGCAGCAGCAGCAGCGGGGGCGGCGGAGGTAGTTCTGCAGGG
TGGAGAAGCGACGAGTTGCAGCGGAAGGCAGCTGTAGCGAAAGGAAGGGC
CGAAATTGCAAAGACTACGGCCTCTCAACTGAGGGCGAGGATGGACGAGA
TGGAAAGGGAGACAAGGAGGAAGCTGCTGGCAGAGAACCCGGACTTGAGG
GAGCAGCACACGCAGGTAGGGAGGGAAGGAGGGAGGGAGAGGGAGGGAAG
GGGGAAGGCCACAAACCATGATAGATGCCCACAGATCACCCGCATTCATT
ACGACTTGGTGTCATATTCCTTCCTTCGCGCCCTTCCCCTTACCCTCCTT
CAGATGGTTGGCGACGGTTTGATCGACGAAGAAGACTTTTGGAACGCCCG
TCGGAAGCTGCTTCTGGACGAGGAGGGCCGGCGGAGGGGAAAACAGACGG
GGCTACCCTCCAATATACTCGCGGAGATCGAGGCACGAGCCATGGAGGGA
GGGTCAGAGGGGGGGAAGGAGGGGGGGAAAGGAGGAGGAGGAGGAGGAGG
GGGAGGGAAGACAACCATTTGCTTGAAGGCGCGAGACGTTCAATTTTTGT
TCGAGCTCTATCCGGCTTTGAAAGAGCTGTACCAGAAGAAGGTAGGTAGG
TAGGTCGGGAGGGAGGGAGGGAGGAAGGGAGGGAAGCAGGGAGGGAGGGA
ATGAGGGAGGGAGGAAGGGAGGGAAGGAGGGAGGGAGGGAAGGAGGGAGG
GATTGATTTTGAGCAATGAGAAATCATGCTCTTGCAGTGGGCCACGAAAG
CACCACCCTCACCCTCTTTTCTGTCCCTCCTTCTCTTTCTCCCTCCCTTC
CCATCCGTAGGTGCCAGAGGAGATGGAGGAGAGAGTGTTCTGGTCGCAGG
TCTTAAGGAGCATTCAGTTCCATAAGCAACGGTTCGAGGCCCATATCGAG
GACGAATTCTCCCGAGCCCGGGAATTAGGGGGAGGAGGGGGAGGAGGAGG
AGGGGGAGGAGGGAGGGAGGGATGGAAGGAGGGAGGAAAGGATGGGGGAG
AGAAGGCTCGGAATAGCCTGTGGAGAGAGGTGGATCCCGTCTTTGACTTG
ATGTCGGGGCAAGGTGCCGAGGGAGGGAGCTGGGGAGGGAGTACAAGCAG
TGGGATGCTGGGAGGGAGGGGGGCAGGAAGGGAGGAGGAGACGGGAGGCA
GCAAGGCAGGTGAGGAGGTGGTGAAGAAGTACAACCGTCAGGCGTCGCTG
TTGGTGAAGAGCAGGCACCGGACGACGGTGGATGAACACGTGGACATGCC
GGACTTGCATGCTTGGTTTGGGGAGATGGAGGGGGAGGCGGGGGAGGAAG
GGGGAGGAGAAGAGGGAGGGAGGGAGGGAGGGAGGAGAAGGAAGTTCGCA
CGGTTGGAGTTGAGGAATCGGGGTCTATATACCTCGGCCATGGGAGGGGA
GGAAGAGGGGGAGGGGGAGGAAGGGGGGGAGGAAGGGGGGCAGGGATGGA
GGGAGGCGGACATGTCGAAGTTTGATTTGCGGAGGTACACGCCAGATTTA
CCATCGGCCCTCCCTTCCTCCCTCGCGGCTGCGGCGGTTTTGGGGGAGCT
AACGGCCAAGGTGTTGAAGGAGGGGGAAGGAGGGAGGGAAGGAGGGGTGG
AGGGGGAGGAGAGGGAGAGGGAGGTGCAGAAGGACCTGCCTAGGGCGTAC
GTGGAGTTTGTGAGGGTATCGGAATTGCTCAGACATTTTCACGCGTTCTT
CTTGCGGCTGAAGAGGGAAGGAGGGAGGGAGGAGGGGAGGGAGGAGGTGA
AGCAAAAGCTGGAGAGGTTGGTGGCGAAGATCGAGAGCAAGCAGAAGGAG
CTGGCCAGGACGAGGAGGGGATTGTGGAATGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGGGGCACCTAGGCTAGCGGCGATGCTGCTGCCGT
TTCAGAGGCAGTTGGAGCATGCCATGGACCTGTACGACTCGTATTTTAGA
GATTTGGCCACCACTGCCCCTGCTATTACTTTTTAG

Coding sequence (CDS) from alignment at chr21:63311..66096-

>NO21G00210.1 ID=NO21G00210.1|Name=NO21G00210.1|organism=Nannochloropsis oceanica|type=CDS|length=2121bp|location=Sequence derived from alignment at chr21:63311..66096- (Nannochloropsis oceanica)
ATGATGGCCACGCATGACCTCTGGAAGGCCCGATGCGAGATGGGCAAGAA
GAAAGGTGTCATCACCCTGGCGGATGACGGTCTCTACTGGCAGCAGGACG
GCTCCTCCTCCCCTAGCAAGCTCCTCGCGTGGAACGACGTGAGCCAGCAC
ATGATCAGCAAGCCCCCTCGTGCCATGGTACGTGTGGAGCTAGCTCGTGG
AGGGGACGTGCGTTTCGAGGTCTCTCCGCTGCCTTCTACAGCGGAAGGAG
GAGGGGGAGGGGAAGGAGGAGAGAAAGGGGGAGGGCAGCAGACAGCCCGG
GGCTTGTGTGAGGCGGCCAAGGAAGTGATTGGTGCTGCCCGCCGGCAGGC
ACGAGCAGCTGTCGCCTCGTCCTCGTCTTCCTCTGCTGCTGGTACTCCTG
CAAATGAAGGAGGGAAAGGGGGAAAGGGGGGAAAAGCAGACAACAGCAGC
AGCAGCAGCAGCAGCGGGGGCGGCGGAGGTAGTTCTGCAGGGTGGAGAAG
CGACGAGTTGCAGCGGAAGGCAGCTGTAGCGAAAGGAAGGGCCGAAATTG
CAAAGACTACGGCCTCTCAACTGAGGGCGAGGATGGACGAGATGGAAAGG
GAGACAAGGAGGAAGCTGCTGGCAGAGAACCCGGACTTGAGGGAGCAGCA
CACGCAGATGGTTGGCGACGGTTTGATCGACGAAGAAGACTTTTGGAACG
CCCGTCGGAAGCTGCTTCTGGACGAGGAGGGCCGGCGGAGGGGAAAACAG
ACGGGGCTACCCTCCAATATACTCGCGGAGATCGAGGCACGAGCCATGGA
GGGAGGGTCAGAGGGGGGGAAGGAGGGGGGGAAAGGAGGAGGAGGAGGAG
GAGGGGGAGGGAAGACAACCATTTGCTTGAAGGCGCGAGACGTTCAATTT
TTGTTCGAGCTCTATCCGGCTTTGAAAGAGCTGTACCAGAAGAAGGTGCC
AGAGGAGATGGAGGAGAGAGTGTTCTGGTCGCAGGTCTTAAGGAGCATTC
AGTTCCATAAGCAACGGTTCGAGGCCCATATCGAGGACGAATTCTCCCGA
GCCCGGGAATTAGGGGGAGGAGGGGGAGGAGGAGGAGGGGGAGGAGGGAG
GGAGGGATGGAAGGAGGGAGGAAAGGATGGGGGAGAGAAGGCTCGGAATA
GCCTGTGGAGAGAGGTGGATCCCGTCTTTGACTTGATGTCGGGGCAAGGT
GCCGAGGGAGGGAGCTGGGGAGGGAGTACAAGCAGTGGGATGCTGGGAGG
GAGGGGGGCAGGAAGGGAGGAGGAGACGGGAGGCAGCAAGGCAGGTGAGG
AGGTGGTGAAGAAGTACAACCGTCAGGCGTCGCTGTTGGTGAAGAGCAGG
CACCGGACGACGGTGGATGAACACGTGGACATGCCGGACTTGCATGCTTG
GTTTGGGGAGATGGAGGGGGAGGCGGGGGAGGAAGGGGGAGGAGAAGAGG
GAGGGAGGGAGGGAGGGAGGAGAAGGAAGTTCGCACGGTTGGAGTTGAGG
AATCGGGGTCTATATACCTCGGCCATGGGAGGGGAGGAAGAGGGGGAGGG
GGAGGAAGGGGGGGAGGAAGGGGGGCAGGGATGGAGGGAGGCGGACATGT
CGAAGTTTGATTTGCGGAGGTACACGCCAGATTTACCATCGGCCCTCCCT
TCCTCCCTCGCGGCTGCGGCGGTTTTGGGGGAGCTAACGGCCAAGGTGTT
GAAGGAGGGGGAAGGAGGGAGGGAAGGAGGGGTGGAGGGGGAGGAGAGGG
AGAGGGAGGTGCAGAAGGACCTGCCTAGGGCGTACGTGGAGTTTGTGAGG
GTATCGGAATTGCTCAGACATTTTCACGCGTTCTTCTTGCGGCTGAAGAG
GGAAGGAGGGAGGGAGGAGGGGAGGGAGGAGGTGAAGCAAAAGCTGGAGA
GGTTGGTGGCGAAGATCGAGAGCAAGCAGAAGGAGCTGGCCAGGACGAGG
AGGGGATTGTGGAATGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGGGGCACCTAGGCTAGCGGCGATGCTGCTGCCGTTTCAGAGGCAGTTGG
AGCATGCCATGGACCTGTACGACTCGTATTTTAGAGATTTGGCCACCACT
GCCCCTGCTATTACTTTTTAG

Synonyms

Publications