NO21G00070.1, NO21G00070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00070.1
Unique NameNO21G00070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1654
Alignment locationchr21:19043..22235 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:19043..22235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00070.1 vs.
Match: XP_005855612.1 (cyclic nucleotide-binding domain protein, partial [Nannochloropsis gaditana CCMP526]; EKU20743.1 cyclic nucleotide-binding domain protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 496.1 bits (1276), Expect = 1.100e-136
Identity = 266/399 (66.67%), Postives = 305/399 (76.44%), Query Frame = 0 
Query:   59 RRLSSSLSPSPSSSSPPVTPPPSPAMKFGPPKGGHALLHFGNACALLSFSMTDVFLLRSLAMVATTCGVIYNITHSPPLRVPAIWGLVFLTVNGTMILSLLMEDKEIAFSKEELVLFEEHFLPYSLTPTQFRKLIAIAQWKEVPAGTTLAEEGERLTHLILISKGKVAAFVNQV------------------PIQSFSTFPGAKDMETNKGIDSGAWIGEINFLDEEKKAKGAIATFVTESPTRFVCWEHARLKGLLLDDAKLSRSVTHAINGALIGKLLSFTNQTKDASTEAYSEIMTTVLVDHRVEPSEKAFIREYRKKHGITEAVHSETLAKLGWTTEEFEDGSKHDKAFNQETVGALRRINEGLIRRQTIMAQDEDEEQALGKVE-ELADRSAGK 439
            R+LSS+ S SPS  +     PP PA KFGPPKGGHALLHFGN CALLSFSMTDVFLLRSLA+VATTCGV+YN+THSPPLR+PA+WG+VFL VNGTMILSLL ED+EIAFSKEEL LFEEHFLPY+LTPTQFR+L++ A+WK+VPAGT LA EGE L  L+LI++GKVAAFVN V                  PIQSFSTFPGA++ E N+G+DSGAWIGEINFLD+EKK                              D  LSRSVTHAINGALIGKLLSFT+ TK+A++EAY EIM TVLVD+RVEPSEKAFIREYR+KHGI++AVH ETLAKLGW  EEF+DGSKHDKAF+ ETVGAL+RINEGLIRRQTI  Q E+E Q   + E E+  R  G+
Sbjct:    4 RQLSSTTSTSPSVQA---ANPPPPAAKFGPPKGGHALLHFGNTCALLSFSMTDVFLLRSLALVATTCGVVYNLTHSPPLRIPALWGMVFLAVNGTMILSLLFEDEEIAFSKEELELFEEHFLPYTLTPTQFRRLLSTAEWKDVPAGTALAVEGEPLDRLVLIARGKVAAFVNGVGGKEGQRRREGKQGVGGIPIQSFSTFPGARETEINQGMDSGAWIGEINFLDQEKK------------------------------DTNLSRSVTHAINGALIGKLLSFTSHTKEANSEAYEEIMATVLVDNRVEPSEKAFIREYRQKHGISDAVHRETLAKLGWKVEEFQDGSKHDKAFSHETVGALQRINEGLIRRQTIELQQEEERQLAEEEEKEMHQRGEGR 369
The following BLAST results are available for this feature:
BLAST of NO21G00070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600Expect = 1.10e-136 / Id = 66.67SequenceXP_005855612.1
Match NameE-valueIdentityDescription
XP_005855612.11.100e-13666.67cyclic nucleotide-binding domain protein, partial ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00070NO21G00070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00070.1NO21G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00070.1.cds1NO21G00070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00070.1.cds2NO21G00070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00070.1.cds3NO21G00070.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00070.1.cds4NO21G00070.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00070.1.cds5NO21G00070.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00070.1.cds6NO21G00070.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00070.1.cds7NO21G00070.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00070.1.cds8NO21G00070.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00070.1.cds9NO21G00070.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00070.1.cds10NO21G00070.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00070.1 ID=NO21G00070.1|Name=NO21G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1654bp
ACAGGTATAATATTTGTCCAGATGAGGAGAGGCGCGACCATCGGCTGCGG
GCTCCTGAGGGAGGGGTTAGCAGCAGGGAGAAGAGTAGCGGCCGCACCAC
CTTCATCTCGACGTGCGGCCGCCTCCCGGCCCCCCATTCCTACCAACAAC
ATGCCCCGCAGCCTTCGCAGCAGCAGCAGTAGCCACTGTGTAGGAAGAAG
ATTAAGCTCGTCGTTGTCACCCTCCCCTTCCTCGTCTTCTCCTCCGGTCA
CGCCTCCTCCTTCCCCAGCCATGAAATTTGGCCCCCCAAAAGGAGGGCAC
GCCTTGTTGCACTTTGGTAATGCTTGCGCTCTGCTGAGTTTTTCCATGAC
AGACGTATTTCTCCTTCGCTCCCTGGCCATGGTGGCCACAACCTGTGGTG
TAATATACAACATCACGCACTCTCCGCCCCTCCGCGTCCCAGCCATCTGG
GGCCTTGTATTTCTCACAGTCAATGGGACCATGATTCTCTCGTTGTTGAT
GGAAGACAAGGAGATTGCGTTCTCAAAGGAGGAGCTCGTCCTCTTCGAAG
AGCACTTTTTGCCCTACTCCCTCACGCCAACCCAATTCCGGAAACTTATC
GCCATCGCTCAGTGGAAGGAGGTGCCAGCAGGCACGACGCTCGCCGAGGA
AGGAGAGCGTCTGACCCACCTTATCCTTATCTCCAAAGGCAAGGTCGCTG
CATTCGTAAACCAGGTGCCCATTCAGTCCTTTTCCACATTCCCTGGGGCG
AAAGACATGGAAACCAACAAGGGCATTGACAGCGGCGCCTGGATCGGCGA
GATCAACTTCCTGGACGAAGAGAAGAAGGCCAAGGGCGCCATCGCCACCT
TTGTGACAGAGAGTCCTACTCGCTTCGTTTGCTGGGAGCACGCCCGACTA
AAAGGGCTCTTGTTAGATGACGCCAAGCTCTCACGCAGCGTGACGCATGC
CATCAATGGGGCTTTGATTGGCAAGCTTTTGTCCTTCACGAACCAGACCA
AGGACGCTAGTACTGAAGCGTATTCTGAAATCATGACGACGGTGCTGGTG
GACCACCGCGTGGAGCCGTCGGAGAAGGCCTTCATCCGGGAGTACCGGAA
GAAGCATGGCATCACAGAGGCGGTCCACAGCGAGACGCTGGCTAAGTTGG
GCTGGACGACCGAAGAGTTTGAGGACGGGAGCAAGCACGACAAGGCTTTC
AATCAAGAGACGGTGGGTGCCCTCAGGAGAATCAATGAGGGCCTGATCCG
ACGGCAGACAATCATGGCTCAAGACGAAGACGAGGAACAGGCGCTGGGGA
AGGTGGAGGAGCTAGCGGATCGCTCAGCAGGTAAAGAATGATAAAAATGA
CAAAAGATCAGAGGACGGAGAAGAAATGGGGATTTACTTGTGTGGGGAAC
GGCGTATGCAAAATGCGACATCGGTAGGAGAGGTGTACATAAATGTACAA
AATTTCACAGTGAAATTAATGGCACGACAAGCAGTACGTGGTATGCTTGA
TTGTTACCTTTTTGGTTCTTTGCTGGGCCGTATGTTCGATTTCTTGTTTT
ATCGACTGATCAGCCGGTATGTTAAAATTGCGCACAAACAAAGGAAAATA
AAGAGTATGCACTACAAGGAACAAAAAGCACTCAGGATTGCAAGACGTAA
ATTT
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protein sequence of NO21G00070.1

>NO21G00070.1-protein ID=NO21G00070.1-protein|Name=NO21G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MRRGATIGCGLLREGLAAGRRVAAAPPSSRRAAASRPPIPTNNMPRSLRS
SSSSHCVGRRLSSSLSPSPSSSSPPVTPPPSPAMKFGPPKGGHALLHFGN
ACALLSFSMTDVFLLRSLAMVATTCGVIYNITHSPPLRVPAIWGLVFLTV
NGTMILSLLMEDKEIAFSKEELVLFEEHFLPYSLTPTQFRKLIAIAQWKE
VPAGTTLAEEGERLTHLILISKGKVAAFVNQVPIQSFSTFPGAKDMETNK
GIDSGAWIGEINFLDEEKKAKGAIATFVTESPTRFVCWEHARLKGLLLDD
AKLSRSVTHAINGALIGKLLSFTNQTKDASTEAYSEIMTTVLVDHRVEPS
EKAFIREYRKKHGITEAVHSETLAKLGWTTEEFEDGSKHDKAFNQETVGA
LRRINEGLIRRQTIMAQDEDEEQALGKVEELADRSAGKE*
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mRNA from alignment at chr21:19043..22235+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00070.1 ID=NO21G00070.1|Name=NO21G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=3193bp|location=Sequence derived from alignment at chr21:19043..22235+ (Nannochloropsis oceanica)
ACAGGTATAATATTTGTCCAGATGAGGAGAGGCGCGACCATCGGCTGCGG
GCTCCTGAGGGAGGGGTTAGCAGCAGGGAGAAGAGTAGCGGCCGCACCAC
CTTCATCTCGACGTGCGGCCGCCTCCCGGCCCCCCATTCCTACCAACAAC
ATGCCCCGCAGCCTTCGCAGCAGCAGCAGTAGCCACTGTGTAGGAAGAAG
ATTAAGCTCGTCGTTGTCACCCTCCCCTTCCTCGTCTTCTCCTCCGGTCA
CGCCTCCTCCTTCCCCAGCCATGAAATTTGGCCCCCCAAAAGGAGGGCAC
GCCTTGTTGCACTTTGGTAATGCTTGCGCTCTGCTGAGTTTTTCCATGAC
AGACGTATTTCTCCTTCGCTCCCTGGCCATGGTGGCCACAACCTGTGGTG
GTGAGGGCTCTTTACAGGGGGGAGGGAGGGAGGGAGGGTAGAAAGGAAGA
AGAGTGGACTGCTTGGTCGAGTGCGATGTTTCTTCCTCTAGTGATGGTCC
TGGTAGTCATAAATAGGCAAGATGGGTGCTTATGTAAAACTAGGATAAAT
GCACAATTCGCCATGGCACTGTGTCAAGTTTGAATCATACCGTCCCTCAT
TCTCTGTCTCTCCCTCCCTAACTCCCTCCAAGTAATATACAACATCACGC
ACTCTCCGCCCCTCCGCGTCCCAGCCATCTGGGGCCTTGTATTTCTCACA
GTCAATGGGACCATGATTCTCTCGTTGTTGATGGAAGACAAGGAGATTGC
GTTCTCAAAGGTAGTGGGAGGGAGGGGGGGAGAGAGGGTAGGAGGATGGG
TGCGTGGGAGCGAGTGTATGTACTAATTCGGTCTTAGCTTCAATTGTGAG
TTAATAAGGAATGAATTTGCGTTGGGAAGCTATTACTCCATTTTTCGCTC
CACCGGTCCTCTCTCGTCCCTTCCTCCTTCCTCTCCTCTCTCGCTGCTTC
TTAGGAGGAGCTCGTCCTCTTCGAAGAGCACTTTTTGCCCTACTCCCTCA
CGCCAACCCAATTCCGGAAACTTATCGCCATCGCTCAGTGGAAGGAGGTG
CCAGCAGGGTAAGAAGAGAGGAAGAGAGGGATGGAGGAGGGAGGGATGGA
GGGAGAGAGGGTTGAAGGAAACTTATCGCCATCGCTTAGTAGAAGGTGCC
AGCAGGGTAAGAAGAGAGAGGGTTGGAGGAAGGGAAAGTGCGAGAACTTC
CTCTAGCGGACTCGCTGATTTCTCACAATCGTCCTTCCCTCCCTCCCTCC
CTTTCTCCCTCCCACCCACCAGCACGACGCTCGCCGAGGAAGGAGAGCGT
CTGACCCACCTTATCCTTATCTCCAAAGGCAAGGTCGCTGCATTCGTAAA
CCAGGTACAAAAGGAGGGAGGGAGAGGGAGAACGGTGGCTAGTAGTCAGC
TGACAAGCAAAACATTCATTGCAATCTCATCCCTCCCTGCCTCCCTCCCT
TCCTCTTGCCCTTGCAGGTGCCCATTCAGTCCTTTTCCACATTCCCTGGG
GCGAAAGACATGGAAACCAACAAGGGCATTGACAGCGGTGAGAAGGGAGG
GAGGGAGGGAGGGAGGGATGACATACACACACACATATATATATATGTAT
CGTGATTCGAGCTCATCCCTCTACTTTTCCTTCCTATCAAACTCGCACCA
GGCGCCTGGATCGGCGAGATCAACTTCCTGGACGAAGAGAAGAAGGTAAT
CTGACGACCCTCCAGTCCCTTTCGACCTCAGTCCCTCCTTCTTTCACCAT
CACCTTCCATCCCTCCCTCTCCCCTTCCCTCCTTGCAGGCCAAGGGCGCC
ATCGCCACCTTTGTGACAGAGAGTCCTACTCGCTTCGTTTGCTGGGAGCA
CGCCCGACTAAAAGGGCTCTTGTTAGATGTACGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGATGAGGGAGAGAAAGAATAACGGAGTTTAGGGTGGAAAG
ACAGGGGCAGCGTTCGTATCAATTGAGGATACAAGCACACACAAAAGGTT
GATCCAATCTCAGGAAGGCAGATTCCGGGAAGACCATTGATCCTGTCATT
CTAATCCCCTGTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTACCTAC
CTACCTCGTCTCTCCCTTCAGGACGCCAAGCTCTCACGCAGCGTGACGCA
TGCCATCAATGGGGCTTTGATTGGCAAGCTTTTGTCCTTCACGAACCAGA
CCAAGGACGCTAGTACTGAAGCGTATTCTGAAATCATGACGACGGTAGGC
AGGGAGGGATGAACGGACGGGAGTGGTGGTGTGACAAGTGGATTTTTGCA
AGACGGGGAGACGAATCCTGGCCATCCGCACTTTTCCTCGTGGTTCGCGG
ATTTTCTGACTTCTATTGTGTCCTGGTCCTTTTCCTCGGTATCTCCCTCT
CTTTCCTTCCTAGGTGCTGGTGGACCACCGCGTGGAGCCGTCGGAGAAGG
CCTTCATCCGGGAGTACCGGAAGAAGCATGGCATCACAGAGGCGGTCCAC
AGGTAGGGAGGTAGGGAGGGAGGAGAGACCTGAGCTGAAAAACACCTTCT
ACTCTCCGAGCGCTGTTGCTAGAGTGAGAGACTTTTCATGCCATAGTCAT
TTTTGGAGGGGGTCACCCCTCACTCACCCCCTTCCTCCCTTCCCTTTGCC
CTCTCCCTCCCTTCCTTAGCGAGACGCTGGCTAAGTTGGGCTGGACGACC
GAAGAGTTTGAGGACGGGAGCAAGCACGACAAGGCTTTCAATCAAGAGAC
GGTGGGTGCCCTCAGGAGAATCAATGAGGGCCTGATCCGACGGCAGACAA
TCATGGCTCAAGACGAAGACGAGGAACAGGCGCTGGGGAAGGTGGAGGAG
CTAGCGGATCGCTCAGCAGGTAAAGAATGATAAAAATGACAAAAGATCAG
AGGACGGAGAAGAAATGGGGATTTACTTGTGTGGGGAACGGCGTATGCAA
AATGCGACATCGGTAGGAGAGGTGTACATAAATGTACAAAATTTCACAGT
GAAATTAATGGCACGACAAGCAGTACGTGGTATGCTTGATTGTTACCTTT
TTGGTTCTTTGCTGGGCCGTATGTTCGATTTCTTGTTTTATCGACTGATC
AGCCGGTATGTTAAAATTGCGCACAAACAAAGGAAAATAAAGAGTATGCA
CTACAAGGAACAAAAAGCACTCAGGATTGCAAGACGTAAATTT
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Coding sequence (CDS) from alignment at chr21:19043..22235+

>NO21G00070.1 ID=NO21G00070.1|Name=NO21G00070.1|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at chr21:19043..22235+ (Nannochloropsis oceanica)
ATGAGGAGAGGCGCGACCATCGGCTGCGGGCTCCTGAGGGAGGGGTTAGC
AGCAGGGAGAAGAGTAGCGGCCGCACCACCTTCATCTCGACGTGCGGCCG
CCTCCCGGCCCCCCATTCCTACCAACAACATGCCCCGCAGCCTTCGCAGC
AGCAGCAGTAGCCACTGTGTAGGAAGAAGATTAAGCTCGTCGTTGTCACC
CTCCCCTTCCTCGTCTTCTCCTCCGGTCACGCCTCCTCCTTCCCCAGCCA
TGAAATTTGGCCCCCCAAAAGGAGGGCACGCCTTGTTGCACTTTGGTAAT
GCTTGCGCTCTGCTGAGTTTTTCCATGACAGACGTATTTCTCCTTCGCTC
CCTGGCCATGGTGGCCACAACCTGTGGTGTAATATACAACATCACGCACT
CTCCGCCCCTCCGCGTCCCAGCCATCTGGGGCCTTGTATTTCTCACAGTC
AATGGGACCATGATTCTCTCGTTGTTGATGGAAGACAAGGAGATTGCGTT
CTCAAAGGAGGAGCTCGTCCTCTTCGAAGAGCACTTTTTGCCCTACTCCC
TCACGCCAACCCAATTCCGGAAACTTATCGCCATCGCTCAGTGGAAGGAG
GTGCCAGCAGGCACGACGCTCGCCGAGGAAGGAGAGCGTCTGACCCACCT
TATCCTTATCTCCAAAGGCAAGGTCGCTGCATTCGTAAACCAGGTGCCCA
TTCAGTCCTTTTCCACATTCCCTGGGGCGAAAGACATGGAAACCAACAAG
GGCATTGACAGCGGCGCCTGGATCGGCGAGATCAACTTCCTGGACGAAGA
GAAGAAGGCCAAGGGCGCCATCGCCACCTTTGTGACAGAGAGTCCTACTC
GCTTCGTTTGCTGGGAGCACGCCCGACTAAAAGGGCTCTTGTTAGATGAC
GCCAAGCTCTCACGCAGCGTGACGCATGCCATCAATGGGGCTTTGATTGG
CAAGCTTTTGTCCTTCACGAACCAGACCAAGGACGCTAGTACTGAAGCGT
ATTCTGAAATCATGACGACGGTGCTGGTGGACCACCGCGTGGAGCCGTCG
GAGAAGGCCTTCATCCGGGAGTACCGGAAGAAGCATGGCATCACAGAGGC
GGTCCACAGCGAGACGCTGGCTAAGTTGGGCTGGACGACCGAAGAGTTTG
AGGACGGGAGCAAGCACGACAAGGCTTTCAATCAAGAGACGGTGGGTGCC
CTCAGGAGAATCAATGAGGGCCTGATCCGACGGCAGACAATCATGGCTCA
AGACGAAGACGAGGAACAGGCGCTGGGGAAGGTGGAGGAGCTAGCGGATC
GCTCAGCAGGTAAAGAATGA
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Synonyms
Publications