NO20G02540.1, NO20G02540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02540.1
Unique NameNO20G02540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1814
Alignment locationchr20:800589..803929 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:800589..803929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G02540.1 vs.
Match: XP_009035509.1 (hypothetical protein AURANDRAFT_58891 [Aureococcus anophagefferens]; EGB09441.1 hypothetical protein AURANDRAFT_58891 [Aureococcus anophagefferens])

HSP 1 Score: 386.7 bits (992), Expect = 8.400e-104
Identity = 206/389 (52.96%), Postives = 259/389 (66.58%), Query Frame = 0 
Query:    2 IDFTDSPQFIPHTQKALNYTPHDVKWVPSSARLVSMGATAGAKGILEIYALSGGELKKTAEAEHKHSFKCSTFGASTLEERNLATGDWSGGLSVWDLDHLSSGPSLSLSTAHAGIINTIDGVGGLEGRGHGAPELVTGSKDGCVRVWDLRVSNPVLSLQPSPGDAKRDCWAVAFGDSHNDAERTLAAGYDNGDVKLFDLRTSTMRHEENVGNGVTSLEFDRRDTPMNKLVITTLESTFHVWDLRSSLGEGEGGKEGGKEGGKEGGVGTERGFVSIKQKMHQNATVWLARHLPQNRDIFATTGAEGGLALWQYHYPVKRSSSSSSPSSPFSFPSSSSSSSPSSPGTLSLLNSRVLSSQPLVALDWHRNKAGLCAIASLDQCLRVHIITKL 391
            ++ T++PQ I H  ++LN+TP++ KWVP SAR V  G +  AKG+L+IY L GG+++  AE  H    KC TFGAS+L ER+LATGD+ GGL V+DL+ L + P+ S+  AH  IIN IDGVGGL G G GAPELVTGS+DGCVRVWD RV  PV+SL+P  G   RDCW  AFG+S  D ER +AAGYDNGDVKLFDLRT+ MR E N  NGVT +EFDR+D  MNKLV+TTLES F V+DLR+                       + GF    +K H+ ATVWLARHLPQNRD+F T G  GG  L+ YHYP KR++            +   ++    PGT+ LLNSRV+S+QP+V+ DW  +K GL  ++ LDQ LRV+I TKL
Sbjct:    1 METTEAPQVIEHQHQSLNFTPYETKWVPCSARFVCCGISPKAKGVLQIYELKGGKMEVVAEKTHDCGLKCGTFGASSLGERSLATGDYKGGLHVFDLERLDA-PTFSVPGAHKAIINGIDGVGGL-GIGGGAPELVTGSRDGCVRVWDPRVREPVVSLEPVEGQPVRDCWCAAFGNSVGD-ERVVAAGYDNGDVKLFDLRTNAMRWETNASNGVTCVEFDRKDIEMNKLVVTTLESRFRVFDLRTQ--------------------HADDGFAHCTEKAHK-ATVWLARHLPQNRDVFMTGGGNGGFNLYAYHYPKKRTA------------THKDNAPVGVPGTVELLNSRVISTQPIVSFDWSPDKEGLAVLSCLDQTLRVYICTKL 353
The following BLAST results are available for this feature:
BLAST of NO20G02540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009035509.18.400e-10452.96hypothetical protein AURANDRAFT_58891 [Aureococcus... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02540NO20G02540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02540.1NO20G02540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02540.1.cds1NO20G02540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02540.1.cds2NO20G02540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02540.1.cds3NO20G02540.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02540.1.cds4NO20G02540.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02540.1.cds5NO20G02540.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02540.1.cds6NO20G02540.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02540.1.cds7NO20G02540.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02540.1.cds8NO20G02540.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02540.1.cds9NO20G02540.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02540.1.cds10NO20G02540.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02540.1 ID=NO20G02540.1|Name=NO20G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp
AAAATTCACCAACATAATGTAGGCAGTGACAAAAAGGCATGAAATAGGAG
ACGTGGGGTCTGGTAAGGTGCAGGCGCGAGCGGCAGCGGCTCCAAAGAGG
ATCGGCCGTCGTTATTCCATCTCGTTTCTTCATCGCTGACATGGCATCAT
CGCCATAGCCAGGCCGCCCCCCGTCGTGATTTGCTGCTTTTTGTGCTGCT
GTGTTGTATGTGCCTATCTCTCTACAGCAGGTCCCTGATGTAAAAGCAGA
TATAATGGTCTCTTTTTGAGACCAGAATCACGTATCCACCCCGCGCGCCG
CGCGCTGACTTGTGTTAAGGCAGCCTCACTCTGCCCTTCCCCTCTTACCC
TCCCATCTCATTTCCTCCCATCAGACCATGATAGATTTTACAGACAGCCC
ACAATTTATCCCGCATACGCAAAAAGCGCTAAATTACACCCCACATGATG
TAAAATGGGTCCCGTCCTCCGCCCGGCTGGTCTCGATGGGGGCCACGGCT
GGCGCCAAAGGCATTTTGGAGATTTATGCGCTCTCGGGCGGCGAGCTCAA
GAAGACGGCCGAGGCTGAACACAAGCACAGTTTCAAATGCTCGACATTTG
GGGCCAGCACGCTGGAAGAAAGGAATCTCGCCACAGGGGACTGGAGCGGG
GGGCTGTCGGTCTGGGACCTGGACCACCTCTCCTCCGGCCCCTCCCTCTC
CCTCTCCACCGCCCATGCAGGCATCATCAACACCATTGACGGCGTGGGAG
GGCTGGAGGGCAGAGGACACGGCGCACCTGAGCTCGTCACCGGCTCAAAG
GACGGCTGCGTCCGAGTTTGGGACTTGAGGGTGTCGAACCCCGTCCTCTC
CCTCCAACCCTCCCCGGGCGATGCCAAAAGAGACTGCTGGGCGGTGGCCT
TTGGCGATTCCCACAATGATGCCGAGAGGACGCTGGCCGCCGGCTACGAC
AACGGAGACGTCAAGCTCTTTGACCTCCGCACCTCCACCATGCGTCACGA
AGAGAATGTGGGCAACGGCGTTACCTCCCTTGAATTCGATCGAAGGGACA
CGCCAATGAACAAGCTTGTCATCACCACCCTCGAGTCTACGTTCCACGTG
TGGGACCTCCGCTCTTCCCTGGGCGAGGGGGAGGGAGGGAAGGAGGGAGG
GAAGGAGGGAGGGAAGGAGGGAGGGGTGGGGACGGAAAGGGGATTCGTGT
CGATCAAGCAGAAGATGCATCAAAATGCCACCGTGTGGCTCGCGCGACAC
TTGCCTCAGAACAGGGATATTTTCGCCACCACGGGAGCAGAGGGCGGGTT
GGCGCTTTGGCAGTACCACTACCCTGTCAAACGCTCCTCCTCCTCTTCTT
CTCCCTCATCCCCTTTCTCCTTCCCTTCCTCCTCCTCCTCCTCCTCTCCT
TCCTCCCCCGGCACTCTCTCCCTTCTCAACTCTCGCGTTCTCTCCTCGCA
GCCCTTGGTCGCTCTCGACTGGCACCGGAATAAGGCCGGTCTCTGCGCTA
TCGCCTCCCTAGACCAATGCCTGCGGGTCCATATCATCACAAAGCTGTAA
CCCAATAGAGGGGGAGGGAGGAAGAGGAGGGGGCGGGGAGGGAAGGAGGG
ACAAAGGCCAAACGATGTCAATAGCAACGCAGTGAGAGGGAGGAAAGGAG
GGAGGAAGGAGGGAGGCAAAGCGTGTCGAAAGTGTTTTGTCCAGTGTTTC
ATAATGAAGAATACATCAATAAAGAGCTCAACCATTCAAGCAGGGGATAC
AACGCTACAGCCTTTGCAAGGGCTGAGACACCTAACTGTTATTTTAAAAT
AAGATATAGGGGGA
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protein sequence of NO20G02540.1

>NO20G02540.1-protein ID=NO20G02540.1-protein|Name=NO20G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MIDFTDSPQFIPHTQKALNYTPHDVKWVPSSARLVSMGATAGAKGILEIY
ALSGGELKKTAEAEHKHSFKCSTFGASTLEERNLATGDWSGGLSVWDLDH
LSSGPSLSLSTAHAGIINTIDGVGGLEGRGHGAPELVTGSKDGCVRVWDL
RVSNPVLSLQPSPGDAKRDCWAVAFGDSHNDAERTLAAGYDNGDVKLFDL
RTSTMRHEENVGNGVTSLEFDRRDTPMNKLVITTLESTFHVWDLRSSLGE
GEGGKEGGKEGGKEGGVGTERGFVSIKQKMHQNATVWLARHLPQNRDIFA
TTGAEGGLALWQYHYPVKRSSSSSSPSSPFSFPSSSSSSSPSSPGTLSLL
NSRVLSSQPLVALDWHRNKAGLCAIASLDQCLRVHIITKL*
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mRNA from alignment at chr20:800589..803929+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02540.1 ID=NO20G02540.1|Name=NO20G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=3341bp|location=Sequence derived from alignment at chr20:800589..803929+ (Nannochloropsis oceanica)
AAAATTCACCAACATAATGTAGGCAGTGACAAAAAGGCATGAAATAGGAG
ACGTGGGGTCTGGTAAGGTGCAGGCGCGAGCGGCAGCGGCTCCAAAGAGG
ATCGGCCGTCGTTATTCCATCTCGTTTCTTCATCGCTGACATGGCATCAT
CGCCATAGCCAGGCCGCCCCCCGTCGTGATTTGCTGCTTTTTGTGCTGCT
GTGTTGTATGTGCCTATCTCTCTACAGCAGGTCCCTGATGTAAAAGCAGA
TATAATGGTCTCTTTTTGAGACCAGAATCACGTATCCACCCCGCGCGCCG
CGCGCTGACTTGTGTTAAGGCAGCCTCACTCTGCCCTTCCCCTCTTACCC
TCCCATCTCATTTCCTCCCATCAGACCATGATAGATTTTACAGACAGCCC
ACAATTTATCCCGCATACGCAAAAAGCGCTAAATTACACCCCACATGATG
TAAAATGGGTCCCGTCCTCCGCCCGGCTGGTCTCGATGGGGGCCACGGCT
GGCGCCAAAGGCATTTTGGAGATTTATGCGCTCTCGGGCGGCGAGCTCAA
GAAGACGGCCGAGGCTGGTAAGGAAAGACAGAACAGAGGGTGTTTGGAAG
AAAGAGGATATTTCCTCATGATATTTAAGGGAGCGAATTGGATCCTTTCG
CTCTGTGTCCTTTCCGCCTTTTTCTTTTTTTTAGCCCCAGACTGCAAACC
CTCCCACTATTCTTACCTTCCCCTTTACTGCCTCCCCCTCCCTTCTCCTC
CTCTTTCGTACTCTCCCGTAGAACACAAGCACAGTTTCAAATGCTCGACA
TTTGGGGCCAGCACGCTGGAAGAAAGGAATCTCGCCACAGGGGACTGGAG
CGGGGGGCTGTCGGTCTGGTATGTCCTATGTGTGTGTGTGTGTGTGTGTA
TGTGTGTGTGTATGTGTGTGTGTGTATGTACCACACCCACCCTCTCTCCC
TCCCTCCCTCCCCTCTTCCTTTCTTTCCTTCCATTCTATGATATCGTGAC
ATTCTACTAACAGCATGTGCTGCCATGATTCATTTTTCCGCGGATCTTTG
TCCAACACTGCCAATACATCCACATCTCCACTCCTTCCCTTCCCCCCCTC
CCTCCCTGCCCTCCCTCCTTCCCTCATTCCCTCCCTTTGCAGGGACCTGG
ACCACCTCTCCTCCGGCCCCTCCCTCTCCCTCTCCACCGCCCATGCAGGC
ATCATCAACACCATTGACGGCGTGGGAGGGCTGGAGGGCAGAGGACACGG
CGCACCTGAGCTCGTCACCGGCTCAAAGGACGGTATGCTCCCGCTCGCTC
CCTCCCTCCCTCTCTCCCTCCCTCCTATTCTCCCCTTACTAATTTCAGGG
GAGATCCAAGTTGCCATTCTGATTCCCACATCCACCCTCCTCCCTTCCTC
CTTCCCTCAGGCTGCGTCCGAGTTTGGGACTTGAGGGTGTCGAACCCCGT
CCTCTCCCTCCAACCCTCCCCGGGCGATGCCAAAAGAGACTGCTGGGCGG
TGGCCTTTGGTGTGTGTGTCACCCTCCCCCCTTCCCTCTTTCCTTCCCCT
CTCCTCTTGTCCTCGTTTTCCTTTCATCTTTCTTGGAAGCTCAACCCTTT
CGTGTGCCTCAGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
TTTCCCTCCCTCCACCCGTAGGCGATTCCCACAATGATGCCGAGAGGACG
CTGGCCGCCGGCTACGACAACGGAGACGTCAAGCTCTTTGGTACGTCCTC
CCTCCCTCCTCCCCTCTCTCCCTCCCTCCCTCCTTCCTTCCTTCCCTCCT
TCCCTCCCTCCTTCCATCCATCGATCCTTCCTTTTGGCCCTTCTTCCCCT
TCCGCCACCCGCGATTGGATGCATCCACACCCACTGGTCTCCCTCCCTCC
CTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCCCCCAG
ACCTCCGCACCTCCACCATGCGTCACGAAGAGAATGTGGGCAACGGCGTT
ACCTCCCTTGAATTCGATCGAAGGGTAAGACCCCTCCCTCCCTGCCTCCC
TCCCTCCCTCCCTCCATCCTTCCCTCCCTCCAGTCCATCGCTCACACACA
CCCTCCCTCTCCCTATCCACCCACAGGACACGCCAATGAACAAGCTTGTC
ATCACCACCCTCGAGTCTACGTTCCACGTGTGGGACCTCCGCTCTTCCCT
GGGCGAGGGGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGG
GAGGGGTGGGGACGGAAAGGGGATTCGTGTCGATCAAGCAGAAGATGCAT
CAAAATGTAAGGTGTTGTGCTGGGGAGACCGTCACTCCTCTTTTATCCTC
CTTCCTTCCTGCCCTGCCTTTCCTTCCTTCTTGCCTCCTCGGGCTCCTCC
GTCCCCTTACCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCATAGGC
CACCGTGTGGCTCGCGCGACACTTGCCTCAGAACAGGGATATTTTCGCCA
CCACGGGAGCAGAGGGCGGGTTGGCGCTTTGGCAGTAGTAAGGAGGGAGG
GATGGAGGGAGGGAGGGAAGGAGGGGCAGACGAATGATATAATTGCTTGT
TTCGCTCAGTCTTTCTCGCTCACTCGTTAATGTTTCCCTTCTTTCCTCCC
TCCCTCCTACCTTTCCTTCCCAGCCACTACCCTGTCAAACGCTCCTCCTC
CTCTTCTTCTCCCTCATCCCCTTTCTCCTTCCCTTCCTCCTCCTCCTCCT
CCTCTCCTTCCTCCCCCGGCACTCTCTCCCTTCTCAACTCTCGCGTTCTC
TCCTCGCAGCCCTTGGTCGCTCTCGACTGGCACCGGAATAAGGCCGGTCT
CTGCGCTATCGCCTCCCTAGGTCGATCCATCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCTCTCCTTCTCCCCCTCTC
GCACTCTCTCCCTCCTTCCCTCTCTCCCTAATCACCGTCTCACTCGGCCT
TTGTTTTCTCCATTCCTCCCTCCCTCCCTCCTTGTCCAGACCAATGCCTG
CGGGTCCATATCATCACAAAGCTGTAACCCAATAGAGGGGGAGGGAGGAA
GAGGAGGGGGCGGGGAGGGAAGGAGGGACAAAGGCCAAACGATGTCAATA
GCAACGCAGTGAGAGGGAGGAAAGGAGGGAGGAAGGAGGGAGGCAAAGCG
TGTCGAAAGTGTTTTGTCCAGTGTTTCATAATGAAGAATACATCAATAAA
GAGCTCAACCATTCAAGCAGGGGATACAACGCTACAGCCTTTGCAAGGGC
TGAGACACCTAACTGTTATTTTAAAATAAGATATAGGGGGA
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Coding sequence (CDS) from alignment at chr20:800589..803929+

>NO20G02540.1 ID=NO20G02540.1|Name=NO20G02540.1|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at chr20:800589..803929+ (Nannochloropsis oceanica)
ATGATAGATTTTACAGACAGCCCACAATTTATCCCGCATACGCAAAAAGC
GCTAAATTACACCCCACATGATGTAAAATGGGTCCCGTCCTCCGCCCGGC
TGGTCTCGATGGGGGCCACGGCTGGCGCCAAAGGCATTTTGGAGATTTAT
GCGCTCTCGGGCGGCGAGCTCAAGAAGACGGCCGAGGCTGAACACAAGCA
CAGTTTCAAATGCTCGACATTTGGGGCCAGCACGCTGGAAGAAAGGAATC
TCGCCACAGGGGACTGGAGCGGGGGGCTGTCGGTCTGGGACCTGGACCAC
CTCTCCTCCGGCCCCTCCCTCTCCCTCTCCACCGCCCATGCAGGCATCAT
CAACACCATTGACGGCGTGGGAGGGCTGGAGGGCAGAGGACACGGCGCAC
CTGAGCTCGTCACCGGCTCAAAGGACGGCTGCGTCCGAGTTTGGGACTTG
AGGGTGTCGAACCCCGTCCTCTCCCTCCAACCCTCCCCGGGCGATGCCAA
AAGAGACTGCTGGGCGGTGGCCTTTGGCGATTCCCACAATGATGCCGAGA
GGACGCTGGCCGCCGGCTACGACAACGGAGACGTCAAGCTCTTTGACCTC
CGCACCTCCACCATGCGTCACGAAGAGAATGTGGGCAACGGCGTTACCTC
CCTTGAATTCGATCGAAGGGACACGCCAATGAACAAGCTTGTCATCACCA
CCCTCGAGTCTACGTTCCACGTGTGGGACCTCCGCTCTTCCCTGGGCGAG
GGGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGGT
GGGGACGGAAAGGGGATTCGTGTCGATCAAGCAGAAGATGCATCAAAATG
CCACCGTGTGGCTCGCGCGACACTTGCCTCAGAACAGGGATATTTTCGCC
ACCACGGGAGCAGAGGGCGGGTTGGCGCTTTGGCAGTACCACTACCCTGT
CAAACGCTCCTCCTCCTCTTCTTCTCCCTCATCCCCTTTCTCCTTCCCTT
CCTCCTCCTCCTCCTCCTCTCCTTCCTCCCCCGGCACTCTCTCCCTTCTC
AACTCTCGCGTTCTCTCCTCGCAGCCCTTGGTCGCTCTCGACTGGCACCG
GAATAAGGCCGGTCTCTGCGCTATCGCCTCCCTAGACCAATGCCTGCGGG
TCCATATCATCACAAAGCTGTAA
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Synonyms
Publications