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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr20 | genome | chr20:721078..725057 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G02390.1 vs.
Match: XP_002179040.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1]; EEC49738.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 162.5 bits (410), Expect = 4.000e-36 Identity = 157/509 (30.84%), Postives = 225/509 (44.20%), Query Frame = 0
Query: 110 SSAVALPINHRAPSS---SPSPKTPAPSSIATSMSATPLSPSSSPSHSPSSSILQPPPAATLIAWCKNVVAHDMGLKDEDLLDD-DFYFIGP-FDGPVGKRLFIDGSLAFDLRGAFPDFDFRAHDFRVDEVQPFRVWFTTRKAGTHRGDLPMYGKTIKPTLRVLDFPPEAYSCTFTPEGKCIKLTGGFVMDATRGNSSGLGGPLGIAAAVGHPLSTFSVQPPLRALLE------TVKSKTSSLLPALPPSLSALWGEGGREGGREGGKMPVLPSETTLTEAELLSLASSFLSSSPSSPLPPSLLPSSIPSLYWLDCDWHGAFSDITILTYNLRLDRHQPATVWADVRRRGTHTGSKSFGGKEGSLFAIPPASGLPYVSAPEAVSLTFNDKKQLVRMTAAAVLDREEGNTGGLGGIYGAYYALNRPSLPLLTRPLRFHSLREWKTSILKSFAGPALAKLPIVKRYASSSFFSPSKVAPSSSSSSSSTLSHTGEKKRKAEGEGEGSPSSQK 608
S A + NH+ ++ + S + P + +A P S+P + + P P+ L+ K V+A D+GL+D LLDD +F I P D P+GK +I FDLRG FPD D+RAHDFR+DE P V T R GT RG+L + + PT V+ PPEA S TF +GK KL GF MD GN+ G G A G P S + + P L + T + +++L P ++ +G VL S L + LLS ++ S+P + S S Y + F++I + R+D + P VW DV+ P A G Y AP++ S TF+D+ R+TA VLD GN GGLGG G YALN LLTRPL ++ ++ IL G + + P V P+ S + LS R+ + EG+ +++
Sbjct: 26 SEAKVVSANHKGSTTLLYAESSRPPFFKDLRNPFAALAKGPRSNPQPGDTFADFDPSPSG-LVRRTKLVLATDLGLQDPSLLDDQEFKCISPGLDQPLGKTDYIAAGRFFDLRGTFPDLDYRAHDFRIDETDPKTVRLTCRVTGTMRGELRLRTANLPPTNIVMFCPPEAVSMTFNDQGKVTKLCMGFCMDRQVGNTQGTTGVQAAATIAGQPPSNWELYPGLSVVKRFFGRPVTPIVENNAILAPFPETVMVQLAKG------------VLGSNMGLEDPTLLSNDFAY-----STPFIAPVSKFSFLSNYAAE-----EFANIDPSLSHFRIDPYNPTRVWVDVK---------------------PSAPG--YEGAPQSYSFTFDDEGFCTRVTARYVLDPSIGNGGGLGGPDGYKYALNDAPSDLLTRPLP-EAVGRFRKKILSPITGVGVDDYKLPGEVKKIIPPKPPTVGPNGKSMAPEPLSKLQSISREPPQQDEGTRKAEQ 487
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO20G02390.1 ID=NO20G02390.1|Name=NO20G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2122bp CTTGGCGATTCCTTTCTTCGTTTCACCGCCCCCACAGTCTCTATGCCTTC ACGCTACGTACACTACGCGCACTTAATGAGAGGAAAAGAAGCATTGAATA GCGTAGATACAGTCTCAAATGTGCCGCTGGCCGAGTAGGAGCGAGATGGG CACACGATAAGGCTGGCACTGCCAAGTCATTCCGACACGCACCAATCTTC CCCCTTAACCACTTCATACATTCCTCGGCATCATTAGAAAACACAACACC GGAGCCCATCAAGAGCCCTACTCATCTTACATGGAGCCGGACGCGGCCAT GACCAAGATAGCGGCATCTCCCGTTTCGACCTCCTCTCCACCCCCGTCCT GTTTCGCTTCCCCAGCGCCCGGCAAGGACAACGTAGCCTCCCCAATCAAG ACTGGAGCAGGACCAGCATCGACCAGCTCCACCGCCAAGGGAAAGAAAAG CCCGACGAAGAAGCCCCCCCCAGTCAAGATGGACATCTCCCCTGTCCCTT CAACCCGCCCTTCCCCGTCACCCTCCTTCTCCTCCTCCATATCTACCACA TCCGCGACCGCCGCCATCCATACCCCTCCTGTAGCTTCCTCCCCCTCCTC CCCCTCCTCCTCGGCAGTCGCTCTCCCAATAAATCACCGTGCTCCTTCCT CCTCGCCTTCCCCCAAGACACCCGCCCCTTCTTCCATCGCCACCTCCATG TCCGCCACTCCGCTTTCTCCCTCCTCCTCTCCCTCCCACTCCCCCTCCTC CTCCATCCTCCAACCCCCTCCTGCCGCCACGCTCATCGCTTGGTGCAAGA ATGTGGTGGCTCATGATATGGGCCTCAAGGACGAAGACCTCTTGGATGAC GACTTTTACTTCATTGGGCCGTTTGACGGGCCCGTCGGAAAGCGCCTCTT CATCGACGGGTCCCTGGCATTCGACCTGCGAGGAGCATTCCCAGATTTCG ATTTCAGGGCTCATGACTTTCGGGTGGACGAGGTGCAGCCCTTCCGGGTA TGGTTCACGACGCGGAAGGCGGGCACCCACCGAGGAGACTTGCCGATGTA TGGCAAGACCATCAAACCCACCCTCCGGGTACTTGATTTCCCTCCCGAAG CCTACTCCTGCACCTTTACACCGGAGGGGAAGTGCATTAAGCTGACAGGA GGTTTCGTCATGGACGCTACGCGAGGAAACAGTTCTGGCCTTGGCGGCCC TCTGGGCATCGCGGCGGCCGTGGGTCATCCGCTGTCCACCTTCTCGGTCC AACCTCCCCTCCGAGCCCTGCTGGAGACGGTGAAAAGCAAGACATCATCC CTCCTTCCCGCCCTCCCTCCCTCCCTTTCCGCCCTGTGGGGTGAGGGAGG GAGGGAGGGAGGGAGGGAGGGAGGGAAGATGCCAGTGTTGCCGAGTGAGA CGACTTTGACAGAGGCGGAGCTCCTCTCCCTCGCATCCTCTTTCCTCTCT TCCTCCCCTTCCTCCCCCCTCCCTCCCTCCCTCCTTCCTTCCTCTATACC GAGCCTCTACTGGCTGGACTGTGACTGGCACGGCGCCTTTTCCGACATCA CCATCCTCACCTATAACCTGCGTCTCGACCGTCATCAGCCGGCCACCGTA TGGGCCGACGTCCGCCGAAGGGGGACTCACACGGGCTCCAAGAGCTTCGG AGGAAAGGAGGGGAGTTTATTCGCCATCCCTCCCGCCTCTGGTCTTCCCT ATGTTTCTGCACCCGAGGCCGTTTCCCTCACCTTCAATGACAAAAAGCAG CTAGTGCGGATGACGGCAGCAGCAGTCCTGGATCGGGAAGAGGGAAACAC GGGCGGTCTCGGAGGGATTTATGGCGCCTACTACGCCCTCAATCGCCCTT CCCTCCCTCTCTTGACGCGCCCCCTCCGCTTCCACTCCCTAAGAGAATGG AAAACGTCCATTCTCAAGAGTTTCGCCGGTCCTGCCCTGGCTAAGCTTCC TATTGTGAAACGTTACGCCTCTTCCTCCTTCTTCTCTCCTTCCAAGGTCG CCCCCTCCTCCTCCTCCTCCTCCTCCTCTACTCTCTCACATACGGGAGAG AAGAAGAGGAAGGCGGAGGGGGAGGGGGAGGGCTCACCCTCAAGTCAAAA AATGGCACTATCATCCGAGTAG back to topprotein sequence of NO20G02390.1 >NO20G02390.1-protein ID=NO20G02390.1-protein|Name=NO20G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=614bp MEPDAAMTKIAASPVSTSSPPPSCFASPAPGKDNVASPIKTGAGPASTSS TAKGKKSPTKKPPPVKMDISPVPSTRPSPSPSFSSSISTTSATAAIHTPP VASSPSSPSSSAVALPINHRAPSSSPSPKTPAPSSIATSMSATPLSPSSS PSHSPSSSILQPPPAATLIAWCKNVVAHDMGLKDEDLLDDDFYFIGPFDG PVGKRLFIDGSLAFDLRGAFPDFDFRAHDFRVDEVQPFRVWFTTRKAGTH RGDLPMYGKTIKPTLRVLDFPPEAYSCTFTPEGKCIKLTGGFVMDATRGN SSGLGGPLGIAAAVGHPLSTFSVQPPLRALLETVKSKTSSLLPALPPSLS ALWGEGGREGGREGGKMPVLPSETTLTEAELLSLASSFLSSSPSSPLPPS LLPSSIPSLYWLDCDWHGAFSDITILTYNLRLDRHQPATVWADVRRRGTH TGSKSFGGKEGSLFAIPPASGLPYVSAPEAVSLTFNDKKQLVRMTAAAVL DREEGNTGGLGGIYGAYYALNRPSLPLLTRPLRFHSLREWKTSILKSFAG PALAKLPIVKRYASSSFFSPSKVAPSSSSSSSSTLSHTGEKKRKAEGEGE GSPSSQKMALSSE* back to topmRNA from alignment at chr20:721078..725057+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO20G02390.1 ID=NO20G02390.1|Name=NO20G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=3980bp|location=Sequence derived from alignment at chr20:721078..725057+ (Nannochloropsis oceanica) CTTGGCGATTCCTTTCTTCGTTTCACCGCCCCCACAGTCTCTATGCCTTC
ACGCTACGTACACTACGCGCACTTAATGAGAGGAAAAGAAGCATTGAATA
GCGTAGATACAGTCTCAAATGTGCCGCTGGCCGAGTAGGAGCGAGATGGG
CACACGATAAGGCTGGCACTGCCAAGTCATTCCGACACGCACCAATCTTC
CCCCTTAACCACTTCATACATTCCTCGGCATCATTAGAAAACACAACACC
GGAGCCCATCAAGAGCCCTACTCATCTTACATGGAGCCGGACGCGGCCAT
GACCAAGATAGCGGCATCTCCCGTTTCGACCTCCTCTCCACCCCCGTCCT
GTTTCGCTTCCCCAGCGCCCGGCAAGGACAACGTAGCCTCCCCAATCAAG
ACTGGAGCAGGACCAGCATCGACCAGCTCCACCGCCAAGGGAAAGAAAAG
GTATGCGTCATTGTAGGGATCGCGGAGGAAAGAAGGAGCAAACACAGGGT
ATTGACACTTGCTACCCTCCTACCCCTCCTACCGTCCCACCCTCCTCTTT
CCCTTCCTCAAGCCCGACGAAGAAGCCCCCCCCAGTCAAGATGGACATCT
CCCCTGTCCCTTCAACCCGCCCTTCCCCGTCACCCTCCTTCTCCTCCTCC
ATATCTACCACATCCGCGACCGCCGCCATCCATACCCCTCCTGTAGCTTC
CTCCCCCTCCTCCCCCTCCTCCTCGGCAGTCGCTCTCCCAATAAATCACC
GTGCTCCTTCCTCCTCGCCTTCCCCCAAGACACCCGCCCCTTCTTCCATC
GCCACCTCCATGTCCGCCACTCCGCTTTCTCCCTCCTCCTCTCCCTCCCA
CTCCCCCTCCTCCTCCATCCTCCAACCCCCTCCTGCCGCCACGCTCATCG
CTTGGTGCAAGAATGTGGTGGCTCATGATATGGGCCTCAAGGACGAAGAC
CTCTTGGATGACGACTTTTACTTCATTGGGCCGTTTGACGGGTGAGAGCC
CGTCCTTTTTTCCCTAACTCCCTCCCTCCCTCCTTTCCACTTTCACATGC
CTCCGAACTAAACCCCTCTCTCCTCCACAGGCCCGTCGGAAAGCGCCTCT
TCATCGACGGGTCCCTGGCATTCGACCTGCGAGGAGCATTCCCAGATTTC
GATTTCAGGGCTCATGACTTTCGGGTGGACGAGGTAGGTAGCCAGATGCC
CCTTCCTCCCTCCTTCCCTTCTCTCCCTCCTTCCCTCCCTCCTTCCCTTC
CTTCCTCCCTCCTTTCATATTAAATGTCAGAAACTTGATTCTATCCCTCC
CTCTCTCCCTCCCTCACTCCCTTCATTCTCCAGGTGCAGCCCTTCCGGGT
ATGGTTCACGACGCGGAAGGCGGGCACCCACCGAGGAGACTTGCCGATGT
ATGGCAAGGTGAGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAGGATATGAGTTCCCAGGG
TTGAACCTGTAGGAAGGCAGAGAGGGAAAGAGAAAGGGAGAAGGGGATCA
GTTCAACAGACCCACCATTCCTCCCTCCCTCCCTCCCTTCCTCCCTTCCC
AGACCATCAAACCCACCCTCCGGGTACTTGATTTCCCTCCCGAAGCCTAC
TCCTGCACCTTTACACCGGAGGGGAAGTGCATTAAGCTGACAGGAGGTTT
CGTCATGGACGCTACGCGAGGAAACAGTTCTGGCCTTGGCGGTGCGTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCGCCTTCCTTCCCACATAC
CAATCACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCAG
GCCCTCTGGGCATCGCGGCGGCCGTGGGTCATCCGCTGTCCACCTTCTCG
GTCCAACCTCCCCTCCGAGCCCTGCTGGAGACGGTGAAAAGCAAGACATC
ATCCCTCCTTCCCGCCCTCCCTCCCTCCCTTTCCGCCCTGTGGGGTGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGATGCCAGTGTTGCCGAGT
GAGACGACTTTGACAGAGGTGAGGGAAAGAGGGACGGAGGGACGGAGGGA
GGGAGGGAGGGATGGAAGGAGGGAGGGAGGGAGAGGTGATTGGTACATGG
GATGTATATTGAGGGAGGGGGGGAGGGAGGGAGGGAAAGCAGGGCAGCCG
TTCTGTTGCGTGGTAACCCCGTCGACCTCCTCCTTTTTCTCTCATCCTGC
TCCACCTCCCTCCCTCCTTCCCTTCCCCCCCCCCCTTCACCTCGCAGGCG
GAGCTCCTCTCCCTCGCATCCTCTTTCCTCTCTTCCTCCCCTTCCTCCCC
CCTCCCTCCCTCCCTCCTTCCTTCCTCTATACCGAGCCTCTACTGGGTAA
GCGGTGGATAGGAAAGGAGGAATACCTCCAGCGGCAGCTGGACTGTGACT
GGCACGGCGCCTTTTCCGACATCAGTACGTGCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCCTCGTC
TCGACGAAGCCAGGCACATGAACATAAATGCATTTCAAATCGATCATTCT
CCGATCCCTCTCTCCCTTCCTCCATCTCCTTCCTCCTCCTTCCCTCCCTC
CCTCTTACAGCCATCCTCACCTATAACCTGCGTCTCGACCGTCATCAGCC
GGCCACCGTATGGGCCGACGTCCGCCGAAGGGGGACTCACACGGGCTCCA
AGAGCTTCGGAGGAAAGGAGGGGAGGTAAGGAAGCAAGGAAGGGAGGGAG
GGAGGGAAAGAGGAAGGGAGAGAGAGAGGGAGGGAGGAAAGGGAGGGATA
AGACGATAAAGGACTGCGGGTGGCTTCGCCTTCCTAACGCACCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCAGTT
TATTCGCCATCCCTCCCGCCTCTGGTCTTCCCTATGTTTCTGCACCCGAG
GCCGTTTCCCTCACCTTCAATGACAAAAAGCAGCTAGTGCGGTACGTCCC
TTTCTCCCGTCCTCCTCACTCGCACCCCTTCTTCCTCAATCCCTCTCTTC
CTCCCTCCCTCCCTCCCTCCCTTCCGTCCTCATCACTCATCCCTCCTCTC
CTTCCCTTTCTTCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TTCCTCCCTCTCTTCCCTCAGGATGACGGCAGCAGCAGTCCTGGATCGGG
AAGAGGGAAACACGGGCGGTCTCGGAGGGATTTATGGTAAGCCCTTCACT
CCCTCCCGCTCTCCTTCTCTCTCTCCCTCCTTTCTACCCTCTCTCCCTCC
CCCCTTCTCCACCTACGGGAAGCCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCAACCCATCCCACCACGCCCTCAACCGA
TTCATCAACGCGACGTTCTCATCAATTCCCCCCCCCTTCCCCCCCTCCCT
CCCCCCCTTCCTCCTTCCAGGCGCCTACTACGCCCTCAATCGCCCTTCCC
TCCCTCTCTTGACGCGCCCCCTCCGCTTCCACTCCCTAAGAGAATGGAAA
ACGTCCATTCTCAAGAGTTTCGCCGGTCCTGCCCTGGCTAAGGTAAGCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCC
TTCCTTCCTTCTTGTCTTTCACCCTCGCTCCCTTCATTCTCCCCTCCCTC
CCTCCCTCCCTCCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCTCACCC
CAGCTTCCTATTGTGAAACGTTACGCCTCTTCCTCCTTCTTCTCTCCTTC
CAAGGTCGCCCCCTCCTCCTCCTCCTCCTCCTCCTCTACTCTCTCACATA
CGGGAGAGAAGAAGAGGAAGGCGGAGGGGGAGGGGGAGGGCTCACCCTCA
AGTCAAAAAATGGCACTATCATCCGAGTAG back to topCoding sequence (CDS) from alignment at chr20:721078..725057+ >NO20G02390.1 ID=NO20G02390.1|Name=NO20G02390.1|organism=Nannochloropsis oceanica|type=CDS|length=1842bp|location=Sequence derived from alignment at chr20:721078..725057+ (Nannochloropsis oceanica) ATGGAGCCGGACGCGGCCATGACCAAGATAGCGGCATCTCCCGTTTCGAC CTCCTCTCCACCCCCGTCCTGTTTCGCTTCCCCAGCGCCCGGCAAGGACA ACGTAGCCTCCCCAATCAAGACTGGAGCAGGACCAGCATCGACCAGCTCC ACCGCCAAGGGAAAGAAAAGCCCGACGAAGAAGCCCCCCCCAGTCAAGAT GGACATCTCCCCTGTCCCTTCAACCCGCCCTTCCCCGTCACCCTCCTTCT CCTCCTCCATATCTACCACATCCGCGACCGCCGCCATCCATACCCCTCCT GTAGCTTCCTCCCCCTCCTCCCCCTCCTCCTCGGCAGTCGCTCTCCCAAT AAATCACCGTGCTCCTTCCTCCTCGCCTTCCCCCAAGACACCCGCCCCTT CTTCCATCGCCACCTCCATGTCCGCCACTCCGCTTTCTCCCTCCTCCTCT CCCTCCCACTCCCCCTCCTCCTCCATCCTCCAACCCCCTCCTGCCGCCAC GCTCATCGCTTGGTGCAAGAATGTGGTGGCTCATGATATGGGCCTCAAGG ACGAAGACCTCTTGGATGACGACTTTTACTTCATTGGGCCGTTTGACGGG CCCGTCGGAAAGCGCCTCTTCATCGACGGGTCCCTGGCATTCGACCTGCG AGGAGCATTCCCAGATTTCGATTTCAGGGCTCATGACTTTCGGGTGGACG AGGTGCAGCCCTTCCGGGTATGGTTCACGACGCGGAAGGCGGGCACCCAC CGAGGAGACTTGCCGATGTATGGCAAGACCATCAAACCCACCCTCCGGGT ACTTGATTTCCCTCCCGAAGCCTACTCCTGCACCTTTACACCGGAGGGGA AGTGCATTAAGCTGACAGGAGGTTTCGTCATGGACGCTACGCGAGGAAAC AGTTCTGGCCTTGGCGGCCCTCTGGGCATCGCGGCGGCCGTGGGTCATCC GCTGTCCACCTTCTCGGTCCAACCTCCCCTCCGAGCCCTGCTGGAGACGG TGAAAAGCAAGACATCATCCCTCCTTCCCGCCCTCCCTCCCTCCCTTTCC GCCCTGTGGGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGAT GCCAGTGTTGCCGAGTGAGACGACTTTGACAGAGGCGGAGCTCCTCTCCC TCGCATCCTCTTTCCTCTCTTCCTCCCCTTCCTCCCCCCTCCCTCCCTCC CTCCTTCCTTCCTCTATACCGAGCCTCTACTGGCTGGACTGTGACTGGCA CGGCGCCTTTTCCGACATCACCATCCTCACCTATAACCTGCGTCTCGACC GTCATCAGCCGGCCACCGTATGGGCCGACGTCCGCCGAAGGGGGACTCAC ACGGGCTCCAAGAGCTTCGGAGGAAAGGAGGGGAGTTTATTCGCCATCCC TCCCGCCTCTGGTCTTCCCTATGTTTCTGCACCCGAGGCCGTTTCCCTCA CCTTCAATGACAAAAAGCAGCTAGTGCGGATGACGGCAGCAGCAGTCCTG GATCGGGAAGAGGGAAACACGGGCGGTCTCGGAGGGATTTATGGCGCCTA CTACGCCCTCAATCGCCCTTCCCTCCCTCTCTTGACGCGCCCCCTCCGCT TCCACTCCCTAAGAGAATGGAAAACGTCCATTCTCAAGAGTTTCGCCGGT CCTGCCCTGGCTAAGCTTCCTATTGTGAAACGTTACGCCTCTTCCTCCTT CTTCTCTCCTTCCAAGGTCGCCCCCTCCTCCTCCTCCTCCTCCTCCTCTA CTCTCTCACATACGGGAGAGAAGAAGAGGAAGGCGGAGGGGGAGGGGGAG GGCTCACCCTCAAGTCAAAAAATGGCACTATCATCCGAGTAG back to top
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