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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr20 | genome | chr20:710659..713602 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G02360.1 vs.
Match: XP_005854062.1 (glycosyl group 2 family protein, partial [Nannochloropsis gaditana CCMP526]; EKU22298.1 glycosyl group 2 family protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 624.8 bits (1610), Expect = 2.900e-175 Identity = 291/426 (68.31%), Postives = 352/426 (82.63%), Query Frame = 0
Query: 26 ILGILACLLLGFSDAAGHNTSACLAMIMKNEGPILPRLFDSIRGFVSEYCVMDTGSTDDTVDVLRAIDMPGKILHGPFINFAQARNAMINQCREVMTSCDYFVLLDADMVLRVDPAWNWDDLDGKDVYNLIQISSVEYENVRIIRRTADRIKVVGATHEYYDVPDDYTRGLIPKDLVYIDDVGDGKAKGDKSQRDERLLRQELADDPNNPRTIFYLANTLRDMGRYADAIPYYEQRSHMDNGWWVERDYAVYMLSRCYLALDDVANARKYGELSASISNRAEPLYDLIYYLHHREQYALAWYYYTLASGIPKPPVDQALFIVLDIYAFWLDFEQATLSRHIYPTQPTLVLEAGLSFLNNVHAPQHLRNYFYKREWGSHTVQYLETNMSYHHYDATHAKTFWQFILHPTSSTASDNTTDVDNSCPLS 452
+ G + CL + NTS CLAMI+KNEGPILPRLFDS+RGFVSEYCVMDTGSTDDTVDVLR+ID+PG++LHGPFINFAQARN MI++CR++M SCDYF+LLDADM+L+V P W+W+ +D +DVYNLIQ S VEYENVR+IRRTAD+IKV+GATHEYYDVPD+Y+R LI KDL+YI+DVGDGKAKGDK +RDE LLRQ+L DP+NPRT+FYLANTL+DM RYA+AIP YEQRS MDNGWWVERDYAVYML +CYL L+D++NARKYGEL+A IS RAEPLYDL+YYLHH E Y LAWYYYTLAS IPKP V + LFIV DIYAFWLDFE+ATLSRHI+P QP L L AG+SFLNN++APQ+LR YFY+ W ++ L + ++YHHY A+ FW +L+ ++ T +T ++ +S
Sbjct: 7 VWGTIFCLQESNAIKRDTNTSVCLAMIIKNEGPILPRLFDSVRGFVSEYCVMDTGSTDDTVDVLRSIDVPGQVLHGPFINFAQARNLMIDECRKLMKSCDYFLLLDADMILKVHPEWSWNIIDDRDVYNLIQESKVEYENVRLIRRTADKIKVIGATHEYYDVPDEYSRELISKDLIYIEDVGDGKAKGDKFERDEYLLRQDLERDPSNPRTVFYLANTLKDMKRYAEAIPLYEQRSFMDNGWWVERDYAVYMLCKCYLGLEDLSNARKYGELAARISKRAEPLYDLVYYLHHNELYTLAWYYYTLASQIPKPAVKETLFIVGDIYAFWLDFEKATLSRHIFPDQPILALTAGVSFLNNMYAPQYLREYFYREAWIESIIKCLRSTVTYHHYHASQPDIFWHSVLNNSAETECRYSTSGESDRRIS 432
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO20G02360.1 ID=NO20G02360.1|Name=NO20G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2944bp
CTACCACTTACAGGTCCTTAATTTTCTTTTTGTCGTCAATCTTCTCCAGG
CCTTCGGCTGTCTCCTCCATTTTTCCCAAGCCTCCTCCTCCCCTTCGCAG
AATTTACTCTTTTCCCCCTATGCAAGAAAGACATCTCCTATCTAGCAATG
TCATCCACTAGACAATGAAAAAAAGACTATGCAGCTTGAGGAAATCATGA
CCTTCCGGAAGAAAAACATCGGGGCGCTGAGCACAAGGAGCCAAAGTAGC
TCGTTGGTTTGGGATGAGCGTTTTCCCCATCACCTAGTCGGGGACGATGG
AGAGCTCGGCCTCTCTTGCTGATTCGCCGAGGCAGTAAAAGGCCTTTCTC
ATCTATCTCATTGATGAAATGAGGGTTTAGAAGTTCAAGGAAACGCGACC
CTTCGGAGGGAAAGCATAGGCAGCCGCGAGGACCAGGGGCCCATGTCTTA
AGAAAAACGTTACCCATCCCAAATACTGGGTCACTCCAGGGCGGCTGCTC
CTGCTGTTTCTGCATGCTCCGTCATCCCTTCCCCATCATCCATCCCCTGC
AAAACAGTAGGTATAAAGTAGCACACCTTGGAGCACATCGTGCAGCTCTC
GATCTCATGTGGGGGTGTTGGGGGCATTTATGCGGCGACGGCAATTCCAT
GGGCCTCCCTAATCGATTCGCCAAGCCCGTGATGGACCTTCTATCTACAA
CCCACTCGGCTACACACCCAAAAACACACGCACGCACACAATTGAAGAGT
TTATCATGCCTTTCACGCATCGCCCGCTCTGGGTGCGAACTTTACTCGCC
GATGGGGTGCATAGTAGGTCTCCCATGCTATTATGAGACCAAATTAACTG
ATGGGTCTGACATGCTTTCTCCTCTTTCTCAACCCCCGACATAGTATGAA
GCCGCTTCATCATCAATGCCTGGCCATTTTGGGTATTCTTGCATGTCTAC
TTTTGGGATTTAGTGATGCGGCTGGCCATAACACCAGCGCTTGTCTTGCA
ATGATCATGAAGAACGAGGGGCCAATATTGCCCCGCCTTTTTGATAGTAT
TCGCGGCTTTGTATCGGAATATTGTGTCATGGATACCGGCTCGACGGACG
ATACTGTGGATGTATTGAGAGCTATTGATATGCCGGGAAAGATTTTGCAC
GGACCCTTCATCAACTTTGCCCAGGCACGCAATGCGATGATCAATCAGTG
CCGTGAGGTGATGACCTCGTGTGATTACTTTGTGCTTCTGGATGCGGACA
TGGTGCTGCGTGTTGATCCGGCATGGAATTGGGATGATCTGGATGGGAAG
GATGTGTACAATTTGATTCAGATCTCAAGTGTGGAGTACGAGAACGTGCG
GATCATCCGTCGCACGGCAGACCGAATCAAGGTAGTGGGCGCAACCCATG
AGTACTACGATGTGCCCGATGATTACACGCGAGGGCTGATCCCTAAAGAC
TTGGTATATATTGATGACGTGGGCGATGGAAAAGCCAAAGGAGACAAATC
ACAACGCGATGAGCGGTTGCTCCGGCAGGAGCTTGCAGACGACCCAAACA
ATCCACGAACAATCTTTTACTTGGCAAATACCCTAAGGGATATGGGAAGG
TACGCCGACGCCATACCCTATTACGAGCAGCGCAGTCACATGGACAACGG
ATGGTGGGTGGAACGGGACTATGCTGTGTACATGCTTTCTCGATGCTACC
TGGCGCTAGACGACGTCGCCAATGCTAGGAAGTACGGTGAGCTATCGGCG
AGCATCTCGAACCGAGCAGAGCCTCTGTACGACTTGATCTACTACCTGCA
CCACCGCGAACAGTATGCCTTGGCATGGTATTACTATACTCTAGCGTCCG
GTATCCCTAAACCTCCAGTGGACCAAGCACTGTTCATTGTCTTGGACATA
TATGCTTTCTGGCTTGATTTCGAACAGGCGACGCTATCGCGGCATATTTA
TCCTACTCAACCCACACTTGTCCTTGAGGCAGGGTTATCGTTCTTGAACA
ATGTGCATGCGCCCCAGCACTTGCGGAACTACTTTTACAAGAGAGAATGG
GGCTCACATACAGTGCAATATCTCGAGACTAACATGTCGTACCACCATTA
TGATGCGACACACGCCAAGACGTTCTGGCAGTTCATACTTCACCCAACAT
CCTCAACAGCAAGTGATAATACCACCGATGTGGACAACTCGTGCCCTCTC
AGCTTATTGGAAGGACATAGACCCGAGGAACTCATGGACGATGAGACTCT
TCCAAACCACCTTCCATTATTTGCGACCATGCCTGAGGTGGAGGTGTCGT
GCATAAACCAGTGGTACCCTATGCAGATAGGTAAAGTGGTGGAGGGGGTA
TGTGAGGTGCACACCTCTGTTGCGACTCCTCGCAGTTTCTCGTTCCTAAG
CAAAGGCAGCAACGGTGCTCTGTATCAAGACGCCACGTGGTTTTTAGCAA
AGTCGCATACCGAAGATACGGCATCAGGCAGAGTGCTTTTCCACTTTGTT
GTCATAGATGCTAGTTCTCGCATCAAAACTTATACGTTGCCCTTTATGCT
GAGGGAGACGCCGTCTGGTACGAATGCCGAGACGGCTTTGTTCTTGCGAG
AGGACGAAATCATCATCGTTTTCATTGATGGTGAGGATGCGGGGGACGTG
ACATCTGTGGTCCATCGCCTCCCGTTGATAGCTTTGGGCCCGTTGCTAGT
GACAGGACCTAAGCATTAAAAGGGTGCTGCTCCAGTTATGATAAACGTAC
TAACCTCTGCAATATATTGCCCCCTCCAAAGACTCTGTACTTTCCCTGTG
TACTTTCAAAACCTTGCATCCCGACGCGCTGCTCTCACTCTTACAGTACA
TGTACGATGGGAGTGGCCTGTACCTAATTCCTCGTGTCAGTCTATTGAGA
AAAAGTCAACCAATGCCAACCAAAGAACCAATCACGAAGGCAAT back to topprotein sequence of NO20G02360.1 >NO20G02360.1-protein ID=NO20G02360.1-protein|Name=NO20G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=623bp
MGLTCFLLFLNPRHSMKPLHHQCLAILGILACLLLGFSDAAGHNTSACLA
MIMKNEGPILPRLFDSIRGFVSEYCVMDTGSTDDTVDVLRAIDMPGKILH
GPFINFAQARNAMINQCREVMTSCDYFVLLDADMVLRVDPAWNWDDLDGK
DVYNLIQISSVEYENVRIIRRTADRIKVVGATHEYYDVPDDYTRGLIPKD
LVYIDDVGDGKAKGDKSQRDERLLRQELADDPNNPRTIFYLANTLRDMGR
YADAIPYYEQRSHMDNGWWVERDYAVYMLSRCYLALDDVANARKYGELSA
SISNRAEPLYDLIYYLHHREQYALAWYYYTLASGIPKPPVDQALFIVLDI
YAFWLDFEQATLSRHIYPTQPTLVLEAGLSFLNNVHAPQHLRNYFYKREW
GSHTVQYLETNMSYHHYDATHAKTFWQFILHPTSSTASDNTTDVDNSCPL
SLLEGHRPEELMDDETLPNHLPLFATMPEVEVSCINQWYPMQIGKVVEGV
CEVHTSVATPRSFSFLSKGSNGALYQDATWFLAKSHTEDTASGRVLFHFV
VIDASSRIKTYTLPFMLRETPSGTNAETALFLREDEIIIVFIDGEDAGDV
TSVVHRLPLIALGPLLVTGPKH* back to topmRNA from alignment at chr20:710659..713602+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO20G02360.1 ID=NO20G02360.1|Name=NO20G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2944bp|location=Sequence derived from alignment at chr20:710659..713602+ (Nannochloropsis oceanica)
CTACCACTTACAGGTCCTTAATTTTCTTTTTGTCGTCAATCTTCTCCAGG
CCTTCGGCTGTCTCCTCCATTTTTCCCAAGCCTCCTCCTCCCCTTCGCAG
AATTTACTCTTTTCCCCCTATGCAAGAAAGACATCTCCTATCTAGCAATG
TCATCCACTAGACAATGAAAAAAAGACTATGCAGCTTGAGGAAATCATGA
CCTTCCGGAAGAAAAACATCGGGGCGCTGAGCACAAGGAGCCAAAGTAGC
TCGTTGGTTTGGGATGAGCGTTTTCCCCATCACCTAGTCGGGGACGATGG
AGAGCTCGGCCTCTCTTGCTGATTCGCCGAGGCAGTAAAAGGCCTTTCTC
ATCTATCTCATTGATGAAATGAGGGTTTAGAAGTTCAAGGAAACGCGACC
CTTCGGAGGGAAAGCATAGGCAGCCGCGAGGACCAGGGGCCCATGTCTTA
AGAAAAACGTTACCCATCCCAAATACTGGGTCACTCCAGGGCGGCTGCTC
CTGCTGTTTCTGCATGCTCCGTCATCCCTTCCCCATCATCCATCCCCTGC
AAAACAGTAGGTATAAAGTAGCACACCTTGGAGCACATCGTGCAGCTCTC
GATCTCATGTGGGGGTGTTGGGGGCATTTATGCGGCGACGGCAATTCCAT
GGGCCTCCCTAATCGATTCGCCAAGCCCGTGATGGACCTTCTATCTACAA
CCCACTCGGCTACACACCCAAAAACACACGCACGCACACAATTGAAGAGT
TTATCATGCCTTTCACGCATCGCCCGCTCTGGGTGCGAACTTTACTCGCC
GATGGGGTGCATAGTAGGTCTCCCATGCTATTATGAGACCAAATTAACTG
ATGGGTCTGACATGCTTTCTCCTCTTTCTCAACCCCCGACATAGTATGAA
GCCGCTTCATCATCAATGCCTGGCCATTTTGGGTATTCTTGCATGTCTAC
TTTTGGGATTTAGTGATGCGGCTGGCCATAACACCAGCGCTTGTCTTGCA
ATGATCATGAAGAACGAGGGGCCAATATTGCCCCGCCTTTTTGATAGTAT
TCGCGGCTTTGTATCGGAATATTGTGTCATGGATACCGGCTCGACGGACG
ATACTGTGGATGTATTGAGAGCTATTGATATGCCGGGAAAGATTTTGCAC
GGACCCTTCATCAACTTTGCCCAGGCACGCAATGCGATGATCAATCAGTG
CCGTGAGGTGATGACCTCGTGTGATTACTTTGTGCTTCTGGATGCGGACA
TGGTGCTGCGTGTTGATCCGGCATGGAATTGGGATGATCTGGATGGGAAG
GATGTGTACAATTTGATTCAGATCTCAAGTGTGGAGTACGAGAACGTGCG
GATCATCCGTCGCACGGCAGACCGAATCAAGGTAGTGGGCGCAACCCATG
AGTACTACGATGTGCCCGATGATTACACGCGAGGGCTGATCCCTAAAGAC
TTGGTATATATTGATGACGTGGGCGATGGAAAAGCCAAAGGAGACAAATC
ACAACGCGATGAGCGGTTGCTCCGGCAGGAGCTTGCAGACGACCCAAACA
ATCCACGAACAATCTTTTACTTGGCAAATACCCTAAGGGATATGGGAAGG
TACGCCGACGCCATACCCTATTACGAGCAGCGCAGTCACATGGACAACGG
ATGGTGGGTGGAACGGGACTATGCTGTGTACATGCTTTCTCGATGCTACC
TGGCGCTAGACGACGTCGCCAATGCTAGGAAGTACGGTGAGCTATCGGCG
AGCATCTCGAACCGAGCAGAGCCTCTGTACGACTTGATCTACTACCTGCA
CCACCGCGAACAGTATGCCTTGGCATGGTATTACTATACTCTAGCGTCCG
GTATCCCTAAACCTCCAGTGGACCAAGCACTGTTCATTGTCTTGGACATA
TATGCTTTCTGGCTTGATTTCGAACAGGCGACGCTATCGCGGCATATTTA
TCCTACTCAACCCACACTTGTCCTTGAGGCAGGGTTATCGTTCTTGAACA
ATGTGCATGCGCCCCAGCACTTGCGGAACTACTTTTACAAGAGAGAATGG
GGCTCACATACAGTGCAATATCTCGAGACTAACATGTCGTACCACCATTA
TGATGCGACACACGCCAAGACGTTCTGGCAGTTCATACTTCACCCAACAT
CCTCAACAGCAAGTGATAATACCACCGATGTGGACAACTCGTGCCCTCTC
AGCTTATTGGAAGGACATAGACCCGAGGAACTCATGGACGATGAGACTCT
TCCAAACCACCTTCCATTATTTGCGACCATGCCTGAGGTGGAGGTGTCGT
GCATAAACCAGTGGTACCCTATGCAGATAGGTAAAGTGGTGGAGGGGGTA
TGTGAGGTGCACACCTCTGTTGCGACTCCTCGCAGTTTCTCGTTCCTAAG
CAAAGGCAGCAACGGTGCTCTGTATCAAGACGCCACGTGGTTTTTAGCAA
AGTCGCATACCGAAGATACGGCATCAGGCAGAGTGCTTTTCCACTTTGTT
GTCATAGATGCTAGTTCTCGCATCAAAACTTATACGTTGCCCTTTATGCT
GAGGGAGACGCCGTCTGGTACGAATGCCGAGACGGCTTTGTTCTTGCGAG
AGGACGAAATCATCATCGTTTTCATTGATGGTGAGGATGCGGGGGACGTG
ACATCTGTGGTCCATCGCCTCCCGTTGATAGCTTTGGGCCCGTTGCTAGT
GACAGGACCTAAGCATTAAAAGGGTGCTGCTCCAGTTATGATAAACGTAC
TAACCTCTGCAATATATTGCCCCCTCCAAAGACTCTGTACTTTCCCTGTG
TACTTTCAAAACCTTGCATCCCGACGCGCTGCTCTCACTCTTACAGTACA
TGTACGATGGGAGTGGCCTGTACCTAATTCCTCGTGTCAGTCTATTGAGA
AAAAGTCAACCAATGCCAACCAAAGAACCAATCACGAAGGCAAT back to topCoding sequence (CDS) from alignment at chr20:710659..713602+ >NO20G02360.1 ID=NO20G02360.1|Name=NO20G02360.1|organism=Nannochloropsis oceanica|type=CDS|length=1869bp|location=Sequence derived from alignment at chr20:710659..713602+ (Nannochloropsis oceanica)
ATGGGTCTGACATGCTTTCTCCTCTTTCTCAACCCCCGACATAGTATGAA
GCCGCTTCATCATCAATGCCTGGCCATTTTGGGTATTCTTGCATGTCTAC
TTTTGGGATTTAGTGATGCGGCTGGCCATAACACCAGCGCTTGTCTTGCA
ATGATCATGAAGAACGAGGGGCCAATATTGCCCCGCCTTTTTGATAGTAT
TCGCGGCTTTGTATCGGAATATTGTGTCATGGATACCGGCTCGACGGACG
ATACTGTGGATGTATTGAGAGCTATTGATATGCCGGGAAAGATTTTGCAC
GGACCCTTCATCAACTTTGCCCAGGCACGCAATGCGATGATCAATCAGTG
CCGTGAGGTGATGACCTCGTGTGATTACTTTGTGCTTCTGGATGCGGACA
TGGTGCTGCGTGTTGATCCGGCATGGAATTGGGATGATCTGGATGGGAAG
GATGTGTACAATTTGATTCAGATCTCAAGTGTGGAGTACGAGAACGTGCG
GATCATCCGTCGCACGGCAGACCGAATCAAGGTAGTGGGCGCAACCCATG
AGTACTACGATGTGCCCGATGATTACACGCGAGGGCTGATCCCTAAAGAC
TTGGTATATATTGATGACGTGGGCGATGGAAAAGCCAAAGGAGACAAATC
ACAACGCGATGAGCGGTTGCTCCGGCAGGAGCTTGCAGACGACCCAAACA
ATCCACGAACAATCTTTTACTTGGCAAATACCCTAAGGGATATGGGAAGG
TACGCCGACGCCATACCCTATTACGAGCAGCGCAGTCACATGGACAACGG
ATGGTGGGTGGAACGGGACTATGCTGTGTACATGCTTTCTCGATGCTACC
TGGCGCTAGACGACGTCGCCAATGCTAGGAAGTACGGTGAGCTATCGGCG
AGCATCTCGAACCGAGCAGAGCCTCTGTACGACTTGATCTACTACCTGCA
CCACCGCGAACAGTATGCCTTGGCATGGTATTACTATACTCTAGCGTCCG
GTATCCCTAAACCTCCAGTGGACCAAGCACTGTTCATTGTCTTGGACATA
TATGCTTTCTGGCTTGATTTCGAACAGGCGACGCTATCGCGGCATATTTA
TCCTACTCAACCCACACTTGTCCTTGAGGCAGGGTTATCGTTCTTGAACA
ATGTGCATGCGCCCCAGCACTTGCGGAACTACTTTTACAAGAGAGAATGG
GGCTCACATACAGTGCAATATCTCGAGACTAACATGTCGTACCACCATTA
TGATGCGACACACGCCAAGACGTTCTGGCAGTTCATACTTCACCCAACAT
CCTCAACAGCAAGTGATAATACCACCGATGTGGACAACTCGTGCCCTCTC
AGCTTATTGGAAGGACATAGACCCGAGGAACTCATGGACGATGAGACTCT
TCCAAACCACCTTCCATTATTTGCGACCATGCCTGAGGTGGAGGTGTCGT
GCATAAACCAGTGGTACCCTATGCAGATAGGTAAAGTGGTGGAGGGGGTA
TGTGAGGTGCACACCTCTGTTGCGACTCCTCGCAGTTTCTCGTTCCTAAG
CAAAGGCAGCAACGGTGCTCTGTATCAAGACGCCACGTGGTTTTTAGCAA
AGTCGCATACCGAAGATACGGCATCAGGCAGAGTGCTTTTCCACTTTGTT
GTCATAGATGCTAGTTCTCGCATCAAAACTTATACGTTGCCCTTTATGCT
GAGGGAGACGCCGTCTGGTACGAATGCCGAGACGGCTTTGTTCTTGCGAG
AGGACGAAATCATCATCGTTTTCATTGATGGTGAGGATGCGGGGGACGTG
ACATCTGTGGTCCATCGCCTCCCGTTGATAGCTTTGGGCCCGTTGCTAGT
GACAGGACCTAAGCATTAA back to top
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