NO20G02320.1, NO20G02320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02320.1
Unique NameNO20G02320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1644
Alignment locationchr20:700372..703390 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:700372..703390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G02320.1 vs.
Match: CBN79940.1 (peptidyl prolyl cis/trans isomerase like [Ectocarpus siliculosus])

HSP 1 Score: 200.7 bits (509), Expect = 1.200e-47
Identity = 99/213 (46.48%), Postives = 141/213 (66.20%), Query Frame = 0 
Query:  332 RASHILVKTEEEADALLAVLENGADFGELAMLESDCPSRKQGGDLGWFGAGQMVPAFEEACFTNDPGAFVKVQTEFGYHIIQVTGKATGPGDWHPSQLGDLLKEGKEATKDV----QLIDVREPDELLRADITGAGFLNLPLSQFPSWREKILSGE--LLDKSKKTIVLCHHGGRSMQVASFLTGQAGFESVFNLSGGINMYSQLVDDSIPMY 539
            RA+H+L   E+ A+A L  +++G  FG++A   S CPS+ +GGDLGWF  GQMV  FE ACF NDPG  VKVQT+FG+H++ +  +A  P      +LG++L+  K    DV    Q +DVRE +EL +A + G  F+NLPLS+F  W +K LSGE  +LD  K T+++CHHG RS Q+A  L  +AGF+ V+N+ GG++ Y+  VD S+ +Y
Sbjct:   99 RAAHVLCADEDAAEAALTRIKSGEQFGDVATDMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWHVVALLSRAILPRQMAVEELGEILELAKSGAGDVDSKYQFVDVREEEELGKAKLDG--FVNLPLSKFEEWSDK-LSGEGAILDAEKDTVIMCHHGMRSNQMAQHLATKAGFKRVWNVEGGLHAYASHVDSSVGVY 308
The following BLAST results are available for this feature:
BLAST of NO20G02320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN79940.11.200e-4746.48peptidyl prolyl cis/trans isomerase like [Ectocarp... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02320NO20G02320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02320.1NO20G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02320.1.cds1NO20G02320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02320.1.cds2NO20G02320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02320.1.cds3NO20G02320.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02320.1.cds4NO20G02320.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02320.1.cds5NO20G02320.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02320.1.cds6NO20G02320.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02320.1.cds7NO20G02320.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02320.1 ID=NO20G02320.1|Name=NO20G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp
ATGGTTGATAAAGGGTCGGAAGAATATCGCTGCTTTAAGGAGGGACAGAG
GGAGGCCCGCATTCAGGAAGCGTTTTGGGGGAGGAAGGGAGGGAGGGAAG
GAGGGCAGGCGGAAGGGTTGGTTTGGAGTGATTGTGCCTTGGGGCAGGAG
CAGCAATATCGACAGAACCAGCAGTACCACCTTCCACCGCAGCAGCAGCA
GCAGCAGCAATCACAGTTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGT
GGGTGTGGTCCACCGGGCATGAGGCAGCAGCTGCGGCAGCGACAGAGAAA
CGACAAAGGAAGATGGCACGCGGCGAAGCATGGAGGGATGAGGAAAATTT
AAAAGAGCAGGAGGGAGAGAAAAAGGTCAGAAAAGGGGAAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGTGCAGACGCAGTGGGAGCGACGGTTG
GAGAATCAGGCTCAAGGCTTCTTGTCGGAGGTCCTTAGGGAGGAAGCAGC
AGGAGGGGGCGGGGGGATGGGGGAGGAGCAGGAACCATGGGCCAGGCGAA
CGGAATCGCGTGCTCGGCATTCTGCTGCCGTCCTGCCATATTCTCTCTCC
GCCGCTCTCACTCTCAAAATATTGCCTCCCCCACAGAGCAACGAAACAGC
AGCAGGAGCAGCAGCACTCCTTGCGTCCTTTTTCATGCCCAGCATCGTGT
CCCACTACCGTCTTTGCTTTACCGTGCTTCTGCTGTCGCTTGCGCTTGAC
ATGCTTAGCCGCCCAGCCGCTGCCTTCTGTCAATTAGCCCTTCGGAGCCG
CCCTTCTTCTGCCGCCTCTGCCACAGGAGGCATCGTCGCCGCACGTCGTC
CTTTTTCGGTTGCGCGCCTGCCCATCCTGCGGGCACAGCGCTGTGTATCT
TCTCCGCTCTCTCCTTCTTTCCTTCCCCCAGCTTTTTCGTCCTCTACGCG
GTTGATGGCTGGCGCGGCCGCTCCTGACCCGCGGATTAAAGTACGAGCCT
CTCACATCCTGGTAAAGACCGAAGAGGAGGCTGATGCCCTGCTGGCCGTG
TTGGAAAATGGCGCTGATTTTGGAGAGCTAGCAATGTTAGAAAGCGACTG
CCCCTCCCGCAAGCAAGGCGGGGACCTGGGATGGTTTGGTGCGGGGCAGA
TGGTACCTGCTTTCGAGGAGGCCTGCTTTACCAACGATCCTGGCGCCTTT
GTCAAGGTGCAGACTGAGTTCGGTTATCACATCATTCAGGTCACCGGCAA
GGCCACAGGTCCCGGTGACTGGCATCCGTCTCAGTTAGGGGATTTACTAA
AAGAAGGGAAAGAGGCGACCAAAGACGTCCAACTGATAGACGTGCGCGAG
CCAGACGAGCTACTCCGAGCGGATATCACGGGTGCCGGGTTTTTAAACCT
CCCCTTATCACAATTTCCTTCTTGGCGGGAAAAGATTCTTTCGGGCGAGC
TGCTGGACAAGAGCAAGAAGACGATCGTGCTGTGTCATCATGGAGGAAGG
TCGATGCAAGTGGCTTCATTCCTGACGGGTCAGGCGGGATTTGAGAGTGT
GTTTAATTTATCAGGGGGTATCAACATGTACTCGCAGTTGGTGGATGATA
GCATTCCCATGTATTGAATGTGACCTAAATATTACTGGTTGCGA
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protein sequence of NO20G02320.1

>NO20G02320.1-protein ID=NO20G02320.1-protein|Name=NO20G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MVDKGSEEYRCFKEGQREARIQEAFWGRKGGREGGQAEGLVWSDCALGQE
QQYRQNQQYHLPPQQQQQQQSQLQQQQQQQQQQWVWSTGHEAAAAAATEK
RQRKMARGEAWRDEENLKEQEGEKKVRKGEGGGGGGGGGGGVQTQWERRL
ENQAQGFLSEVLREEAAGGGGGMGEEQEPWARRTESRARHSAAVLPYSLS
AALTLKILPPPQSNETAAGAAALLASFFMPSIVSHYRLCFTVLLLSLALD
MLSRPAAAFCQLALRSRPSSAASATGGIVAARRPFSVARLPILRAQRCVS
SPLSPSFLPPAFSSSTRLMAGAAAPDPRIKVRASHILVKTEEEADALLAV
LENGADFGELAMLESDCPSRKQGGDLGWFGAGQMVPAFEEACFTNDPGAF
VKVQTEFGYHIIQVTGKATGPGDWHPSQLGDLLKEGKEATKDVQLIDVRE
PDELLRADITGAGFLNLPLSQFPSWREKILSGELLDKSKKTIVLCHHGGR
SMQVASFLTGQAGFESVFNLSGGINMYSQLVDDSIPMY*
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mRNA from alignment at chr20:700372..703390+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02320.1 ID=NO20G02320.1|Name=NO20G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=3019bp|location=Sequence derived from alignment at chr20:700372..703390+ (Nannochloropsis oceanica)
ATGGTTGATAAAGGGTCGGAAGAATATCGCTGCTTTAAGGAGGGACAGAG
GGAGGCCCGCATTCAGGAAGCGTTTTGGGGGAGGAAGGGAGGGAGGGAAG
GAGGGCAGGCGGAAGGGTTGGTTTGGAGTGATTGTGCCTTGGGGCAGGAG
CAGCAATATCGACAGAACCAGCAGTACCACCTTCCACCGCAGCAGCAGCA
GCAGCAGCAATCACAGTTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGT
GGGTGTGGTCCACCGGGCATGAGGCAGCAGCTGCGGCAGCGACAGAGAAA
CGACAAAGGAAGATGGCACGCGGCGAAGCATGGAGGGATGAGGAAAATTT
AAAAGAGCAGGAGGGAGAGAAAAAGGTCAGAAAAGGGGAAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGTGCAGACGCAGTGGGAGCGACGGTTG
GAGAATCAGGCTCAAGGCTTCTTGTCGGAGGTCCTTAGGGAGGAAGCAGC
AGGAGGGGGCGGGGGGATGGGGGAGGAGCAGGAACGTAAGAAGGAAGAGA
GGAGACGGAGATTGATGCAAAAAATGATGAAATAGGAGGAAGGGAAAGAG
GGATAGGGCCTGAAGGAGTGACCCTGTTTTTGCTTTTTAATTTTGTTTGT
TTTCACATCGCATTTCATGTACATTTGTTAAATCCAGCTATGTAAGGCTT
CATCTCACCGGATCCCGCGTTTTGAAGTCTTTTGCCGCAAATTGTCATGT
CTTTTTATTTGGGGAAGAGATTGTCGAGGCAGTCATGCCCGATTCTAGCC
TTTCCTTTGACCTGACGCCGAGATAAGTGGCTGCGCTCACAACCTTACAG
AGGCAATGTGCACGAACGTGCACAATCATGCTTAATTTAAGCCTGTACAG
ACGCCACGTGTCCTTCTATGTCTGTCCACGACTTTCAACGAAGCACGCAT
TATGAGAGTACAGCATGGGCCAGGCGAACGGAATCGCGTGCTCGGCATTC
TGCTGCCGTCCTGCCATATTCTCTCTCCGCCGCTCTCACTCTCAAAATAT
TGCCTCCCCCACAGAGCAACGAAACAGCAGCAGGAGCAGCAGCACTCCTT
GCGTCCTTTTTCATGCCCAGCATCGGTAAGCATGTTGTGAGAGGAAGAGG
AGGTCGAAAGTCACCCGAAGTATCCTCAACCGTATACATGCCGTCCTTCC
CTCTGAATAGTGTCCCACTACCGTCTTTGCTTTACCGTGCTTCTGCTGTC
GCTTGCGCTTGACATGCTTAGCCGCCCAGCCGCTGCCTTCTGTCAATTAG
CCCTTCGGAGCCGCCCTTCTTCTGCCGCCTCTGCCACAGGAGGCATCGTC
GCCGCACGTCGTCCTTTTTCGGTTGCGCGCCTGCCCATCCTGCGGGCACA
GCGCTGTGTATCTTCTCCGCTCTCTCCTTCTTTCCTTCCCCCAGCTTTTT
CGTCCTCTACGCGGTTGATGGCTGGCGCGGCCGCTCCTGACCCGCGGATT
AAAGTACGAGCCTCTCACATCCTGGTAAGGAGGGAGGGAGGGAGGAAGGG
AGGGAGGGAAGAAGGGAGGGAGCAAGACGGGTTTGTATGTAATTTCAGGT
GGGTGGGATAGATTCCTCTAGATGTGCGATCTTGATATACTTTTTTTTGT
CATGCGTCATTCATCCGCCCTCCTTACCTCCCTCTCTTCGCCCCTATCGT
CCTCGTTACAGGTAAAGACCGAAGAGGAGGCTGATGCCCTGCTGGCCGTG
TTGGAAAATGGCGCTGATTTTGGAGAGCTAGCAATGTTAGAAAGCGACTG
CCCCTCCCGCAAGCAAGGCGGGGACCTGGGATGGTTTGGGTACGTCCCTT
CCTCCCTCCCTTCCTCCCTTCCTCCCTCTATCCCTCTCTCCCTCCCTCCC
TCCCTCTCTCCCTCCCTCCCTCTTTCCCTCTCTCCCTCTCTCCCTCCCTC
CCTACCTCCCTCCTTCCCCTTTCTCCCGCCCTGCCTTTGCCCTCTCCATT
CTTAATCGTGAGGTCACGTTAGCCTTGCGTTTGGTAGGCGTGACATTTTA
CTTCTCTGTATCTTTAGGGTGCAGCCGCAGCGGCTTGTTTGATTCTGCGG
ATGTTTCAAACTCCTTGCTATTCAGCCTCACCCTCTTGTTATCCCTCCCT
TCCTCCCACCCTCCCTCCCTCCTCTCTTTTCCCTTTCCAGTGCGGGGCAG
ATGGTACCTGCTTTCGAGGAGGCCTGCTTTACCAACGATCCTGGCGCCTT
TGTCAAGGTGCAGACTGAGTTCGGTTATCACATCATTCAGGTATGGGACG
GAGGGAGGGGCGGAGGGAGGGGTGGAGGGAGGGACGGAGGGAGGGGCGGA
GGGAGGGACGGAGGGAGGGGCGGAGGGAGGAGGCACCGGACCCCAGTATC
AACAACAAGTGTAAACCAAACTCATCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTTCTTGGCAGGTCACCGGCAAGGCCACAGGTCCCGG
TGACTGGCATCCGTCTCAGTTAGGGGATTTACTAAAAGAAGGGAAAGAGG
CGACCAAAGACGTCCAACTGATAGACGTGCGCGAGCCAGACGAGCTACTC
CGAGCGGATATCACGGGTAAAGAGGAGGGGAAGGAGGGAGGGGGGAAAGG
GAGAAGGCGGTAGTCGAGAGGGAGGGGGAGGGGTTTAAATTTCTTGAGCT
TATGCCTACATCTATCTACACCTCTCTCTCCCTCCCTCCCTCCCTCCCTT
CCCAAGGTGCCGGGTTTTTAAACCTCCCCTTATCACAATTTCCTTCTTGG
CGGGAAAAGATTCTTTCGGGCGAGCTGCTGGACAAGAGCAAGAAGACGAT
CGTGCTGTGTCATCATGGAGGAAGGTCGATGCAAGTGGCTTCATTCCTGA
CGGGTCAGGCGGGATTTGAGAGTGTGTTTAATTTATCAGGGGGTATCAAC
ATGTACTCGCAGTTGGTGGATGATAGCATTCCCATGTATTGAATGTGACC
TAAATATTACTGGTTGCGA
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Coding sequence (CDS) from alignment at chr20:700372..703390+

>NO20G02320.1 ID=NO20G02320.1|Name=NO20G02320.1|organism=Nannochloropsis oceanica|type=CDS|length=1617bp|location=Sequence derived from alignment at chr20:700372..703390+ (Nannochloropsis oceanica)
ATGGTTGATAAAGGGTCGGAAGAATATCGCTGCTTTAAGGAGGGACAGAG
GGAGGCCCGCATTCAGGAAGCGTTTTGGGGGAGGAAGGGAGGGAGGGAAG
GAGGGCAGGCGGAAGGGTTGGTTTGGAGTGATTGTGCCTTGGGGCAGGAG
CAGCAATATCGACAGAACCAGCAGTACCACCTTCCACCGCAGCAGCAGCA
GCAGCAGCAATCACAGTTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGT
GGGTGTGGTCCACCGGGCATGAGGCAGCAGCTGCGGCAGCGACAGAGAAA
CGACAAAGGAAGATGGCACGCGGCGAAGCATGGAGGGATGAGGAAAATTT
AAAAGAGCAGGAGGGAGAGAAAAAGGTCAGAAAAGGGGAAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGTGCAGACGCAGTGGGAGCGACGGTTG
GAGAATCAGGCTCAAGGCTTCTTGTCGGAGGTCCTTAGGGAGGAAGCAGC
AGGAGGGGGCGGGGGGATGGGGGAGGAGCAGGAACCATGGGCCAGGCGAA
CGGAATCGCGTGCTCGGCATTCTGCTGCCGTCCTGCCATATTCTCTCTCC
GCCGCTCTCACTCTCAAAATATTGCCTCCCCCACAGAGCAACGAAACAGC
AGCAGGAGCAGCAGCACTCCTTGCGTCCTTTTTCATGCCCAGCATCGTGT
CCCACTACCGTCTTTGCTTTACCGTGCTTCTGCTGTCGCTTGCGCTTGAC
ATGCTTAGCCGCCCAGCCGCTGCCTTCTGTCAATTAGCCCTTCGGAGCCG
CCCTTCTTCTGCCGCCTCTGCCACAGGAGGCATCGTCGCCGCACGTCGTC
CTTTTTCGGTTGCGCGCCTGCCCATCCTGCGGGCACAGCGCTGTGTATCT
TCTCCGCTCTCTCCTTCTTTCCTTCCCCCAGCTTTTTCGTCCTCTACGCG
GTTGATGGCTGGCGCGGCCGCTCCTGACCCGCGGATTAAAGTACGAGCCT
CTCACATCCTGGTAAAGACCGAAGAGGAGGCTGATGCCCTGCTGGCCGTG
TTGGAAAATGGCGCTGATTTTGGAGAGCTAGCAATGTTAGAAAGCGACTG
CCCCTCCCGCAAGCAAGGCGGGGACCTGGGATGGTTTGGTGCGGGGCAGA
TGGTACCTGCTTTCGAGGAGGCCTGCTTTACCAACGATCCTGGCGCCTTT
GTCAAGGTGCAGACTGAGTTCGGTTATCACATCATTCAGGTCACCGGCAA
GGCCACAGGTCCCGGTGACTGGCATCCGTCTCAGTTAGGGGATTTACTAA
AAGAAGGGAAAGAGGCGACCAAAGACGTCCAACTGATAGACGTGCGCGAG
CCAGACGAGCTACTCCGAGCGGATATCACGGGTGCCGGGTTTTTAAACCT
CCCCTTATCACAATTTCCTTCTTGGCGGGAAAAGATTCTTTCGGGCGAGC
TGCTGGACAAGAGCAAGAAGACGATCGTGCTGTGTCATCATGGAGGAAGG
TCGATGCAAGTGGCTTCATTCCTGACGGGTCAGGCGGGATTTGAGAGTGT
GTTTAATTTATCAGGGGGTATCAACATGTACTCGCAGTTGGTGGATGATA
GCATTCCCATGTATTGA
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Synonyms
Publications