NO20G02210.1, NO20G02210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02210.1
Unique NameNO20G02210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2439
Alignment locationchr20:665620..668058 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:665620..668058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO20G02210.1 vs.
Match: EWM22011.1 (ankyrin repeat domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 364.4 bits (934), Expect = 5.800e-97
Identity = 210/361 (58.17%), Postives = 248/361 (68.70%), Query Frame = 0
Query:   22 GPGPTYPQANNPQYPVNS--QPSQLEARQAAEARAALVEQMIEASKEGNVAVAHALLLQDPTLASCRDSVGQSPLMWAAYKGYTALAVLLIQTNAPVDDHDCQSSRSALYMACEFGNWPVASLLLQHGANPSFRRQLYGRTCLQIAAYNNHAHVVQGVLAFAASCPPSCPTPCVVDVNAVDNHGSTALHLAIREDPQQAISLHPS-NASSSSFDISDTVRVLLSWGADPLIPNLAGALPVTAAQRLQHAKCLSLLTGWERMALVHKARLCVTEARQMEAHVAMEFAALGRKEEKRQRNEWGEVREEETLPDGWTA-VPRQQHQRSSSNFFSSFSSISMRDPKVRMGGKGRKG--REGGRDG 377
            GP PT   A  P +  ++  +    E  QA E RAA+ EQMIEASKEG+V++A  LL QDP+LA CRDSVGQSPLMWAAYKG+  LA LLI+  AP+DDHDCQSSRSALYMACEFGNW VA+LLLQHGA+PSFRRQLYGRTCLQIAAYNNHAHVVQGVL FAA      P PC VD+NAVDNHGSTALHLAIR+D      LHP   A+S+  DIS+TVR+LL WGADPL+P+  G LP+ AA RL H +C++LL  WER ALVHKAR C+ EAR +E     E A LG KE+ R+R  W E ++E       T  V R+ +Q         ++  SM  P     G    G   +GGR+G
Sbjct:   28 GPAPTSSGAPPPPFRHHTVHRTGTNEYAQAMEDRAAMAEQMIEASKEGHVSMADGLLRQDPSLALCRDSVGQSPLMWAAYKGHAELASLLIKAGAPLDDHDCQSSRSALYMACEFGNWAVAALLLQHGADPSFRRQLYGRTCLQIAAYNNHAHVVQGVLHFAAFSSRG-PGPCRVDINAVDNHGSTALHLAIRDD-----HLHPPFQATSAVLDISETVRILLQWGADPLLPDHTGGLPLAAAHRLGHKRCIALLANWERAALVHKARWCLREARLLEVEARAESAMLGPKEDGRRRRLWREAQQERLATSAVTLFVQRRLYQP------CLWAMPSMPVPSPSAWGAPANGAWAQGGREG 376          
The following BLAST results are available for this feature:
BLAST of NO20G02210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800200022002400Expect = 5.80e-97 / Id = 58.17SequenceEWM22011.1
Match NameE-valueIdentityDescription
EWM22011.15.800e-9758.17ankyrin repeat domain protein, partial [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02210NO20G02210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02210.1NO20G02210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02210.1.cds1NO20G02210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02210.1 ID=NO20G02210.1|Name=NO20G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2439bp
TTTTGAATAAGACGTCCCTCCTGCAATACAGCAGGAGATGACCTGCGACG
GATGGCAACAAACACGGCTGCCACGCCCCTCTTTCTTCCAATCAAATTTG
TTGTCGTAGTGGCAGTATCTATGGTTGTCGGTCGAACAGGAAAGACGTGC
GTGGCGTGTTTTGACACATGCATGGGCCTTCTATTTGTGCGGTCCTCCCT
GTTGTTCCATTCTCCCTCACTCCTTCCCTGCCTCAACACCCTATCGCGTT
CAGGCACAGATTTCTTTTCGTAATAGTCTCTATATCCCGTCATGTATTGC
CATAATAACTTGCTTATACCATCCGTTTCTCTCATCCGTCCCTCCTTTGT
CCAACCCACTTCTCGATCTAACCACCCATCCACAGGCAGGCCCTCTCCAT
CCCTCCTCGTCGCTTTCCTTCACCTCAGCGTCACCTCAACCCCATTTCTA
CCATCATTTCCACCCCTTTCATCCAAAGGCCACTCCACAAGTTATGGTTT
CTCCGCACGAGCTTTCGGACCTGACCCCAGCGCTCGTCGCGCAACCCATT
CATACTGGTCCAGGCCCCACCTACCCCCAAGCCAATAACCCTCAGTATCC
TGTCAATTCCCAGCCCTCGCAACTCGAAGCCCGGCAGGCCGCAGAAGCCC
GGGCAGCTCTGGTAGAGCAAATGATCGAGGCCAGCAAGGAAGGGAATGTG
GCTGTCGCGCATGCTCTCTTGCTCCAAGACCCTACCCTTGCCTCCTGCCG
TGACAGCGTGGGACAGTCCCCCCTAATGTGGGCCGCTTACAAAGGGTATA
CTGCCTTAGCCGTCCTCTTGATTCAAACCAACGCCCCCGTGGACGACCAC
GACTGTCAATCCTCTCGCTCCGCCCTGTACATGGCTTGCGAATTTGGGAA
CTGGCCTGTGGCCTCCTTGCTCCTCCAACACGGCGCCAACCCTTCCTTCC
GCCGTCAACTATACGGACGAACCTGCCTTCAAATCGCCGCCTACAATAAC
CATGCCCACGTCGTGCAGGGTGTCCTGGCTTTTGCTGCTTCCTGCCCTCC
ATCCTGTCCTACCCCCTGCGTGGTCGATGTGAATGCGGTAGATAACCACG
GCTCCACTGCGCTTCACCTGGCCATCCGCGAGGACCCCCAGCAGGCCATT
TCCCTCCACCCCTCCAACGCATCATCATCTTCTTTCGACATAAGTGACAC
AGTCCGCGTATTGCTGTCATGGGGGGCGGACCCCTTAATTCCTAACCTGG
CCGGGGCTCTACCGGTAACGGCCGCGCAACGGTTGCAGCACGCAAAGTGT
CTTTCCCTCCTGACGGGATGGGAGCGCATGGCACTTGTTCACAAGGCGAG
GTTATGCGTGACGGAGGCCAGGCAAATGGAAGCGCATGTGGCGATGGAAT
TCGCCGCCTTGGGAAGGAAGGAGGAGAAGAGGCAGAGGAATGAGTGGGGA
GAGGTGAGGGAGGAGGAGACCTTGCCAGATGGATGGACAGCTGTCCCACG
CCAGCAGCACCAACGCTCGTCTTCCAACTTTTTTTCCTCCTTTTCCTCAA
TTTCGATGCGTGACCCGAAGGTGCGGATGGGTGGGAAAGGAAGGAAAGGG
AGGGAGGGAGGGAGGGACGGGCCGTCCAAGCCATCTTTGTTTACTCTGGG
TCTTCGGCAAAGCGAGAGCATCAGCATCAGCAGCAGCAGCAGCAGCAGCA
GCACTAGTAGCAGTAGCAGCAGTCCCAATGGCCAAGCAATAAGCTTAAGC
CTGAGTGGTAGCGGGGCGACCTTTTACTCTCTCCCGTCTCTCCCCTCCAT
CCCAATCACCCTGCCCGTGCTGGAGAAACCCCGCCCTCCCTCCTTCCCTC
CCTCCTTCCCTCCCTACTCTGTCAAGGGGGGAGATGCGATGGGGGTGAGC
GGTGCTGGGGGGCTTACCTGTGATGAGGGAGGGAGGGAAGAAGGGAGGAC
TGGGGAGCAAGGGGTGGAGGGAGAGGGGGGGGGGAGCTGGGAATGCGGAA
GGAGGCGATTGCGTATGTTGTTCATAAGATGAATTTTGACATGCTCTTAA
TGTTGCGGGAGACGTTTGGATAAGAAAGGAGGGAGGGAGGGAGGGAGGGA
GGGGGTGGTAGCAAGGCGAGGTGTTTGCCTAGAGATGTGGATGGACGGAT
GGAGGAAGAGAGGGAGGGATGGAGGGAGGGAGGTACGGAGGGAGGGAAGA
AGGAAGGAAGAGAAGAGGAATGAAGCGTAGTGATGATTTGTAGAAATAAG
AGTTAAATGACGCTTGAAATATCGTCTACGTGTATGTATAGAGAAAGAGA
TAGAGGAGAAGGCGCGCGCGTGTACAGCGAGAAACACCGAGATGAGGAGA
GAGAGAGAGAGGCAGAGAGGACTGGAGAGAGATAAATAGGAATAGACAAA
GAGGGAGACAGGAACAGCCAGAGATGAAGACAGGCAGGT
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protein sequence of NO20G02210.1

>NO20G02210.1-protein ID=NO20G02210.1-protein|Name=NO20G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MVSPHELSDLTPALVAQPIHTGPGPTYPQANNPQYPVNSQPSQLEARQAA
EARAALVEQMIEASKEGNVAVAHALLLQDPTLASCRDSVGQSPLMWAAYK
GYTALAVLLIQTNAPVDDHDCQSSRSALYMACEFGNWPVASLLLQHGANP
SFRRQLYGRTCLQIAAYNNHAHVVQGVLAFAASCPPSCPTPCVVDVNAVD
NHGSTALHLAIREDPQQAISLHPSNASSSSFDISDTVRVLLSWGADPLIP
NLAGALPVTAAQRLQHAKCLSLLTGWERMALVHKARLCVTEARQMEAHVA
MEFAALGRKEEKRQRNEWGEVREEETLPDGWTAVPRQQHQRSSSNFFSSF
SSISMRDPKVRMGGKGRKGREGGRDGPSKPSLFTLGLRQSESISISSSSS
SSSTSSSSSSPNGQAISLSLSGSGATFYSLPSLPSIPITLPVLEKPRPPS
FPPSFPPYSVKGGDAMGVSGAGGLTCDEGGREEGRTGEQGVEGEGGGSWE
CGRRRLRMLFIR*
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mRNA from alignment at chr20:665620..668058-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02210.1 ID=NO20G02210.1|Name=NO20G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2439bp|location=Sequence derived from alignment at chr20:665620..668058- (Nannochloropsis oceanica)
TTTTGAATAAGACGTCCCTCCTGCAATACAGCAGGAGATGACCTGCGACG GATGGCAACAAACACGGCTGCCACGCCCCTCTTTCTTCCAATCAAATTTG TTGTCGTAGTGGCAGTATCTATGGTTGTCGGTCGAACAGGAAAGACGTGC GTGGCGTGTTTTGACACATGCATGGGCCTTCTATTTGTGCGGTCCTCCCT GTTGTTCCATTCTCCCTCACTCCTTCCCTGCCTCAACACCCTATCGCGTT CAGGCACAGATTTCTTTTCGTAATAGTCTCTATATCCCGTCATGTATTGC CATAATAACTTGCTTATACCATCCGTTTCTCTCATCCGTCCCTCCTTTGT CCAACCCACTTCTCGATCTAACCACCCATCCACAGGCAGGCCCTCTCCAT CCCTCCTCGTCGCTTTCCTTCACCTCAGCGTCACCTCAACCCCATTTCTA CCATCATTTCCACCCCTTTCATCCAAAGGCCACTCCACAAGTTATGGTTT CTCCGCACGAGCTTTCGGACCTGACCCCAGCGCTCGTCGCGCAACCCATT CATACTGGTCCAGGCCCCACCTACCCCCAAGCCAATAACCCTCAGTATCC TGTCAATTCCCAGCCCTCGCAACTCGAAGCCCGGCAGGCCGCAGAAGCCC GGGCAGCTCTGGTAGAGCAAATGATCGAGGCCAGCAAGGAAGGGAATGTG GCTGTCGCGCATGCTCTCTTGCTCCAAGACCCTACCCTTGCCTCCTGCCG TGACAGCGTGGGACAGTCCCCCCTAATGTGGGCCGCTTACAAAGGGTATA CTGCCTTAGCCGTCCTCTTGATTCAAACCAACGCCCCCGTGGACGACCAC GACTGTCAATCCTCTCGCTCCGCCCTGTACATGGCTTGCGAATTTGGGAA CTGGCCTGTGGCCTCCTTGCTCCTCCAACACGGCGCCAACCCTTCCTTCC GCCGTCAACTATACGGACGAACCTGCCTTCAAATCGCCGCCTACAATAAC CATGCCCACGTCGTGCAGGGTGTCCTGGCTTTTGCTGCTTCCTGCCCTCC ATCCTGTCCTACCCCCTGCGTGGTCGATGTGAATGCGGTAGATAACCACG GCTCCACTGCGCTTCACCTGGCCATCCGCGAGGACCCCCAGCAGGCCATT TCCCTCCACCCCTCCAACGCATCATCATCTTCTTTCGACATAAGTGACAC AGTCCGCGTATTGCTGTCATGGGGGGCGGACCCCTTAATTCCTAACCTGG CCGGGGCTCTACCGGTAACGGCCGCGCAACGGTTGCAGCACGCAAAGTGT CTTTCCCTCCTGACGGGATGGGAGCGCATGGCACTTGTTCACAAGGCGAG GTTATGCGTGACGGAGGCCAGGCAAATGGAAGCGCATGTGGCGATGGAAT TCGCCGCCTTGGGAAGGAAGGAGGAGAAGAGGCAGAGGAATGAGTGGGGA GAGGTGAGGGAGGAGGAGACCTTGCCAGATGGATGGACAGCTGTCCCACG CCAGCAGCACCAACGCTCGTCTTCCAACTTTTTTTCCTCCTTTTCCTCAA TTTCGATGCGTGACCCGAAGGTGCGGATGGGTGGGAAAGGAAGGAAAGGG AGGGAGGGAGGGAGGGACGGGCCGTCCAAGCCATCTTTGTTTACTCTGGG TCTTCGGCAAAGCGAGAGCATCAGCATCAGCAGCAGCAGCAGCAGCAGCA GCACTAGTAGCAGTAGCAGCAGTCCCAATGGCCAAGCAATAAGCTTAAGC CTGAGTGGTAGCGGGGCGACCTTTTACTCTCTCCCGTCTCTCCCCTCCAT CCCAATCACCCTGCCCGTGCTGGAGAAACCCCGCCCTCCCTCCTTCCCTC CCTCCTTCCCTCCCTACTCTGTCAAGGGGGGAGATGCGATGGGGGTGAGC GGTGCTGGGGGGCTTACCTGTGATGAGGGAGGGAGGGAAGAAGGGAGGAC TGGGGAGCAAGGGGTGGAGGGAGAGGGGGGGGGGAGCTGGGAATGCGGAA GGAGGCGATTGCGTATGTTGTTCATAAGATGAATTTTGACATGCTCTTAA TGTTGCGGGAGACGTTTGGATAAGAAAGGAGGGAGGGAGGGAGGGAGGGA GGGGGTGGTAGCAAGGCGAGGTGTTTGCCTAGAGATGTGGATGGACGGAT GGAGGAAGAGAGGGAGGGATGGAGGGAGGGAGGTACGGAGGGAGGGAAGA AGGAAGGAAGAGAAGAGGAATGAAGCGTAGTGATGATTTGTAGAAATAAG AGTTAAATGACGCTTGAAATATCGTCTACGTGTATGTATAGAGAAAGAGA TAGAGGAGAAGGCGCGCGCGTGTACAGCGAGAAACACCGAGATGAGGAGA GAGAGAGAGAGGCAGAGAGGACTGGAGAGAGATAAATAGGAATAGACAAA GAGGGAGACAGGAACAGCCAGAGATGAAGACAGGCAGGT
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Coding sequence (CDS) from alignment at chr20:665620..668058-

>NO20G02210.1 ID=NO20G02210.1|Name=NO20G02210.1|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at chr20:665620..668058- (Nannochloropsis oceanica)
ATGGTTTCTCCGCACGAGCTTTCGGACCTGACCCCAGCGCTCGTCGCGCA
ACCCATTCATACTGGTCCAGGCCCCACCTACCCCCAAGCCAATAACCCTC
AGTATCCTGTCAATTCCCAGCCCTCGCAACTCGAAGCCCGGCAGGCCGCA
GAAGCCCGGGCAGCTCTGGTAGAGCAAATGATCGAGGCCAGCAAGGAAGG
GAATGTGGCTGTCGCGCATGCTCTCTTGCTCCAAGACCCTACCCTTGCCT
CCTGCCGTGACAGCGTGGGACAGTCCCCCCTAATGTGGGCCGCTTACAAA
GGGTATACTGCCTTAGCCGTCCTCTTGATTCAAACCAACGCCCCCGTGGA
CGACCACGACTGTCAATCCTCTCGCTCCGCCCTGTACATGGCTTGCGAAT
TTGGGAACTGGCCTGTGGCCTCCTTGCTCCTCCAACACGGCGCCAACCCT
TCCTTCCGCCGTCAACTATACGGACGAACCTGCCTTCAAATCGCCGCCTA
CAATAACCATGCCCACGTCGTGCAGGGTGTCCTGGCTTTTGCTGCTTCCT
GCCCTCCATCCTGTCCTACCCCCTGCGTGGTCGATGTGAATGCGGTAGAT
AACCACGGCTCCACTGCGCTTCACCTGGCCATCCGCGAGGACCCCCAGCA
GGCCATTTCCCTCCACCCCTCCAACGCATCATCATCTTCTTTCGACATAA
GTGACACAGTCCGCGTATTGCTGTCATGGGGGGCGGACCCCTTAATTCCT
AACCTGGCCGGGGCTCTACCGGTAACGGCCGCGCAACGGTTGCAGCACGC
AAAGTGTCTTTCCCTCCTGACGGGATGGGAGCGCATGGCACTTGTTCACA
AGGCGAGGTTATGCGTGACGGAGGCCAGGCAAATGGAAGCGCATGTGGCG
ATGGAATTCGCCGCCTTGGGAAGGAAGGAGGAGAAGAGGCAGAGGAATGA
GTGGGGAGAGGTGAGGGAGGAGGAGACCTTGCCAGATGGATGGACAGCTG
TCCCACGCCAGCAGCACCAACGCTCGTCTTCCAACTTTTTTTCCTCCTTT
TCCTCAATTTCGATGCGTGACCCGAAGGTGCGGATGGGTGGGAAAGGAAG
GAAAGGGAGGGAGGGAGGGAGGGACGGGCCGTCCAAGCCATCTTTGTTTA
CTCTGGGTCTTCGGCAAAGCGAGAGCATCAGCATCAGCAGCAGCAGCAGC
AGCAGCAGCACTAGTAGCAGTAGCAGCAGTCCCAATGGCCAAGCAATAAG
CTTAAGCCTGAGTGGTAGCGGGGCGACCTTTTACTCTCTCCCGTCTCTCC
CCTCCATCCCAATCACCCTGCCCGTGCTGGAGAAACCCCGCCCTCCCTCC
TTCCCTCCCTCCTTCCCTCCCTACTCTGTCAAGGGGGGAGATGCGATGGG
GGTGAGCGGTGCTGGGGGGCTTACCTGTGATGAGGGAGGGAGGGAAGAAG
GGAGGACTGGGGAGCAAGGGGTGGAGGGAGAGGGGGGGGGGAGCTGGGAA
TGCGGAAGGAGGCGATTGCGTATGTTGTTCATAAGATGA
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Synonyms
Publications