Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr20 genome chr20:665620..668058 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G02210.1 vs.
Match: EWM22011.1 (ankyrin repeat domain protein, partial [Nannochloropsis gaditana])
HSP 1 Score: 364.4 bits (934), Expect = 5.800e-97
Identity = 210/361 (58.17%), Postives = 248/361 (68.70%), Query Frame = 0
Query: 22 GPGPTYPQANNPQYPVNS--QPSQLEARQAAEARAALVEQMIEASKEGNVAVAHALLLQDPTLASCRDSVGQSPLMWAAYKGYTALAVLLIQTNAPVDDHDCQSSRSALYMACEFGNWPVASLLLQHGANPSFRRQLYGRTCLQIAAYNNHAHVVQGVLAFAASCPPSCPTPCVVDVNAVDNHGSTALHLAIREDPQQAISLHPS-NASSSSFDISDTVRVLLSWGADPLIPNLAGALPVTAAQRLQHAKCLSLLTGWERMALVHKARLCVTEARQMEAHVAMEFAALGRKEEKRQRNEWGEVREEETLPDGWTA-VPRQQHQRSSSNFFSSFSSISMRDPKVRMGGKGRKG--REGGRDG 377
GP PT A P + ++ + E QA E RAA+ EQMIEASKEG+V++A LL QDP+LA CRDSVGQSPLMWAAYKG+ LA LLI+ AP+DDHDCQSSRSALYMACEFGNW VA+LLLQHGA+PSFRRQLYGRTCLQIAAYNNHAHVVQGVL FAA P PC VD+NAVDNHGSTALHLAIR+D LHP A+S+ DIS+TVR+LL WGADPL+P+ G LP+ AA RL H +C++LL WER ALVHKAR C+ EAR +E E A LG KE+ R+R W E ++E T V R+ +Q ++ SM P G G +GGR+G
Sbjct: 28 GPAPTSSGAPPPPFRHHTVHRTGTNEYAQAMEDRAAMAEQMIEASKEGHVSMADGLLRQDPSLALCRDSVGQSPLMWAAYKGHAELASLLIKAGAPLDDHDCQSSRSALYMACEFGNWAVAALLLQHGADPSFRRQLYGRTCLQIAAYNNHAHVVQGVLHFAAFSSRG-PGPCRVDINAVDNHGSTALHLAIRDD-----HLHPPFQATSAVLDISETVRILLQWGADPLLPDHTGGLPLAAAHRLGHKRCIALLANWERAALVHKARWCLREARLLEVEARAESAMLGPKEDGRRRRLWREAQQERLATSAVTLFVQRRLYQP------CLWAMPSMPVPSPSAWGAPANGAWAQGGREG 376
The following BLAST results are available for this feature:
BLAST of NO20G02210.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Expect = 5.80e-97 / Id = 58.17 Sequence EWM22011.1
Match Name E-value Identity Description
EWM22011.1 5.800e-97 58.17 ankyrin repeat domain protein, partial [Nannochlor... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO20G02210.1 ID=NO20G02210.1|Name=NO20G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2439bp TTTTGAATAAGACGTCCCTCCTGCAATACAGCAGGAGATGACCTGCGACG GATGGCAACAAACACGGCTGCCACGCCCCTCTTTCTTCCAATCAAATTTG TTGTCGTAGTGGCAGTATCTATGGTTGTCGGTCGAACAGGAAAGACGTGC GTGGCGTGTTTTGACACATGCATGGGCCTTCTATTTGTGCGGTCCTCCCT GTTGTTCCATTCTCCCTCACTCCTTCCCTGCCTCAACACCCTATCGCGTT CAGGCACAGATTTCTTTTCGTAATAGTCTCTATATCCCGTCATGTATTGC CATAATAACTTGCTTATACCATCCGTTTCTCTCATCCGTCCCTCCTTTGT CCAACCCACTTCTCGATCTAACCACCCATCCACAGGCAGGCCCTCTCCAT CCCTCCTCGTCGCTTTCCTTCACCTCAGCGTCACCTCAACCCCATTTCTA CCATCATTTCCACCCCTTTCATCCAAAGGCCACTCCACAAGTTATGGTTT CTCCGCACGAGCTTTCGGACCTGACCCCAGCGCTCGTCGCGCAACCCATT CATACTGGTCCAGGCCCCACCTACCCCCAAGCCAATAACCCTCAGTATCC TGTCAATTCCCAGCCCTCGCAACTCGAAGCCCGGCAGGCCGCAGAAGCCC GGGCAGCTCTGGTAGAGCAAATGATCGAGGCCAGCAAGGAAGGGAATGTG GCTGTCGCGCATGCTCTCTTGCTCCAAGACCCTACCCTTGCCTCCTGCCG TGACAGCGTGGGACAGTCCCCCCTAATGTGGGCCGCTTACAAAGGGTATA CTGCCTTAGCCGTCCTCTTGATTCAAACCAACGCCCCCGTGGACGACCAC GACTGTCAATCCTCTCGCTCCGCCCTGTACATGGCTTGCGAATTTGGGAA CTGGCCTGTGGCCTCCTTGCTCCTCCAACACGGCGCCAACCCTTCCTTCC GCCGTCAACTATACGGACGAACCTGCCTTCAAATCGCCGCCTACAATAAC CATGCCCACGTCGTGCAGGGTGTCCTGGCTTTTGCTGCTTCCTGCCCTCC ATCCTGTCCTACCCCCTGCGTGGTCGATGTGAATGCGGTAGATAACCACG GCTCCACTGCGCTTCACCTGGCCATCCGCGAGGACCCCCAGCAGGCCATT TCCCTCCACCCCTCCAACGCATCATCATCTTCTTTCGACATAAGTGACAC AGTCCGCGTATTGCTGTCATGGGGGGCGGACCCCTTAATTCCTAACCTGG CCGGGGCTCTACCGGTAACGGCCGCGCAACGGTTGCAGCACGCAAAGTGT CTTTCCCTCCTGACGGGATGGGAGCGCATGGCACTTGTTCACAAGGCGAG GTTATGCGTGACGGAGGCCAGGCAAATGGAAGCGCATGTGGCGATGGAAT TCGCCGCCTTGGGAAGGAAGGAGGAGAAGAGGCAGAGGAATGAGTGGGGA GAGGTGAGGGAGGAGGAGACCTTGCCAGATGGATGGACAGCTGTCCCACG CCAGCAGCACCAACGCTCGTCTTCCAACTTTTTTTCCTCCTTTTCCTCAA TTTCGATGCGTGACCCGAAGGTGCGGATGGGTGGGAAAGGAAGGAAAGGG AGGGAGGGAGGGAGGGACGGGCCGTCCAAGCCATCTTTGTTTACTCTGGG TCTTCGGCAAAGCGAGAGCATCAGCATCAGCAGCAGCAGCAGCAGCAGCA GCACTAGTAGCAGTAGCAGCAGTCCCAATGGCCAAGCAATAAGCTTAAGC CTGAGTGGTAGCGGGGCGACCTTTTACTCTCTCCCGTCTCTCCCCTCCAT CCCAATCACCCTGCCCGTGCTGGAGAAACCCCGCCCTCCCTCCTTCCCTC CCTCCTTCCCTCCCTACTCTGTCAAGGGGGGAGATGCGATGGGGGTGAGC GGTGCTGGGGGGCTTACCTGTGATGAGGGAGGGAGGGAAGAAGGGAGGAC TGGGGAGCAAGGGGTGGAGGGAGAGGGGGGGGGGAGCTGGGAATGCGGAA GGAGGCGATTGCGTATGTTGTTCATAAGATGAATTTTGACATGCTCTTAA TGTTGCGGGAGACGTTTGGATAAGAAAGGAGGGAGGGAGGGAGGGAGGGA GGGGGTGGTAGCAAGGCGAGGTGTTTGCCTAGAGATGTGGATGGACGGAT GGAGGAAGAGAGGGAGGGATGGAGGGAGGGAGGTACGGAGGGAGGGAAGA AGGAAGGAAGAGAAGAGGAATGAAGCGTAGTGATGATTTGTAGAAATAAG AGTTAAATGACGCTTGAAATATCGTCTACGTGTATGTATAGAGAAAGAGA TAGAGGAGAAGGCGCGCGCGTGTACAGCGAGAAACACCGAGATGAGGAGA GAGAGAGAGAGGCAGAGAGGACTGGAGAGAGATAAATAGGAATAGACAAA GAGGGAGACAGGAACAGCCAGAGATGAAGACAGGCAGGT back to top protein sequence of NO20G02210.1
>NO20G02210.1-protein ID=NO20G02210.1-protein|Name=NO20G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp MVSPHELSDLTPALVAQPIHTGPGPTYPQANNPQYPVNSQPSQLEARQAA EARAALVEQMIEASKEGNVAVAHALLLQDPTLASCRDSVGQSPLMWAAYK GYTALAVLLIQTNAPVDDHDCQSSRSALYMACEFGNWPVASLLLQHGANP SFRRQLYGRTCLQIAAYNNHAHVVQGVLAFAASCPPSCPTPCVVDVNAVD NHGSTALHLAIREDPQQAISLHPSNASSSSFDISDTVRVLLSWGADPLIP NLAGALPVTAAQRLQHAKCLSLLTGWERMALVHKARLCVTEARQMEAHVA MEFAALGRKEEKRQRNEWGEVREEETLPDGWTAVPRQQHQRSSSNFFSSF SSISMRDPKVRMGGKGRKGREGGRDGPSKPSLFTLGLRQSESISISSSSS SSSTSSSSSSPNGQAISLSLSGSGATFYSLPSLPSIPITLPVLEKPRPPS FPPSFPPYSVKGGDAMGVSGAGGLTCDEGGREEGRTGEQGVEGEGGGSWE CGRRRLRMLFIR* back to top mRNA from alignment at chr20:665620..668058-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02210.1 ID=NO20G02210.1|Name=NO20G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2439bp|location=Sequence derived from alignment at chr20:665620..668058- (Nannochloropsis oceanica) TTTTGAATAAGACGTCCCTCCTGCAATACAGCAGGAGATGACCTGCGACG
GATGGCAACAAACACGGCTGCCACGCCCCTCTTTCTTCCAATCAAATTTG
TTGTCGTAGTGGCAGTATCTATGGTTGTCGGTCGAACAGGAAAGACGTGC
GTGGCGTGTTTTGACACATGCATGGGCCTTCTATTTGTGCGGTCCTCCCT
GTTGTTCCATTCTCCCTCACTCCTTCCCTGCCTCAACACCCTATCGCGTT
CAGGCACAGATTTCTTTTCGTAATAGTCTCTATATCCCGTCATGTATTGC
CATAATAACTTGCTTATACCATCCGTTTCTCTCATCCGTCCCTCCTTTGT
CCAACCCACTTCTCGATCTAACCACCCATCCACAGGCAGGCCCTCTCCAT
CCCTCCTCGTCGCTTTCCTTCACCTCAGCGTCACCTCAACCCCATTTCTA
CCATCATTTCCACCCCTTTCATCCAAAGGCCACTCCACAAGTTATGGTTT
CTCCGCACGAGCTTTCGGACCTGACCCCAGCGCTCGTCGCGCAACCCATT
CATACTGGTCCAGGCCCCACCTACCCCCAAGCCAATAACCCTCAGTATCC
TGTCAATTCCCAGCCCTCGCAACTCGAAGCCCGGCAGGCCGCAGAAGCCC
GGGCAGCTCTGGTAGAGCAAATGATCGAGGCCAGCAAGGAAGGGAATGTG
GCTGTCGCGCATGCTCTCTTGCTCCAAGACCCTACCCTTGCCTCCTGCCG
TGACAGCGTGGGACAGTCCCCCCTAATGTGGGCCGCTTACAAAGGGTATA
CTGCCTTAGCCGTCCTCTTGATTCAAACCAACGCCCCCGTGGACGACCAC
GACTGTCAATCCTCTCGCTCCGCCCTGTACATGGCTTGCGAATTTGGGAA
CTGGCCTGTGGCCTCCTTGCTCCTCCAACACGGCGCCAACCCTTCCTTCC
GCCGTCAACTATACGGACGAACCTGCCTTCAAATCGCCGCCTACAATAAC
CATGCCCACGTCGTGCAGGGTGTCCTGGCTTTTGCTGCTTCCTGCCCTCC
ATCCTGTCCTACCCCCTGCGTGGTCGATGTGAATGCGGTAGATAACCACG
GCTCCACTGCGCTTCACCTGGCCATCCGCGAGGACCCCCAGCAGGCCATT
TCCCTCCACCCCTCCAACGCATCATCATCTTCTTTCGACATAAGTGACAC
AGTCCGCGTATTGCTGTCATGGGGGGCGGACCCCTTAATTCCTAACCTGG
CCGGGGCTCTACCGGTAACGGCCGCGCAACGGTTGCAGCACGCAAAGTGT
CTTTCCCTCCTGACGGGATGGGAGCGCATGGCACTTGTTCACAAGGCGAG
GTTATGCGTGACGGAGGCCAGGCAAATGGAAGCGCATGTGGCGATGGAAT
TCGCCGCCTTGGGAAGGAAGGAGGAGAAGAGGCAGAGGAATGAGTGGGGA
GAGGTGAGGGAGGAGGAGACCTTGCCAGATGGATGGACAGCTGTCCCACG
CCAGCAGCACCAACGCTCGTCTTCCAACTTTTTTTCCTCCTTTTCCTCAA
TTTCGATGCGTGACCCGAAGGTGCGGATGGGTGGGAAAGGAAGGAAAGGG
AGGGAGGGAGGGAGGGACGGGCCGTCCAAGCCATCTTTGTTTACTCTGGG
TCTTCGGCAAAGCGAGAGCATCAGCATCAGCAGCAGCAGCAGCAGCAGCA
GCACTAGTAGCAGTAGCAGCAGTCCCAATGGCCAAGCAATAAGCTTAAGC
CTGAGTGGTAGCGGGGCGACCTTTTACTCTCTCCCGTCTCTCCCCTCCAT
CCCAATCACCCTGCCCGTGCTGGAGAAACCCCGCCCTCCCTCCTTCCCTC
CCTCCTTCCCTCCCTACTCTGTCAAGGGGGGAGATGCGATGGGGGTGAGC
GGTGCTGGGGGGCTTACCTGTGATGAGGGAGGGAGGGAAGAAGGGAGGAC
TGGGGAGCAAGGGGTGGAGGGAGAGGGGGGGGGGAGCTGGGAATGCGGAA
GGAGGCGATTGCGTATGTTGTTCATAAGATGA ATTTTGACATGCTCTTAA
TGTTGCGGGAGACGTTTGGATAAGAAAGGAGGGAGGGAGGGAGGGAGGGA
GGGGGTGGTAGCAAGGCGAGGTGTTTGCCTAGAGATGTGGATGGACGGAT
GGAGGAAGAGAGGGAGGGATGGAGGGAGGGAGGTACGGAGGGAGGGAAGA
AGGAAGGAAGAGAAGAGGAATGAAGCGTAGTGATGATTTGTAGAAATAAG
AGTTAAATGACGCTTGAAATATCGTCTACGTGTATGTATAGAGAAAGAGA
TAGAGGAGAAGGCGCGCGCGTGTACAGCGAGAAACACCGAGATGAGGAGA
GAGAGAGAGAGGCAGAGAGGACTGGAGAGAGATAAATAGGAATAGACAAA
GAGGGAGACAGGAACAGCCAGAGATGAAGACAGGCAGGT back to top Coding sequence (CDS) from alignment at chr20:665620..668058-
>NO20G02210.1 ID=NO20G02210.1|Name=NO20G02210.1|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at chr20:665620..668058- (Nannochloropsis oceanica) ATGGTTTCTCCGCACGAGCTTTCGGACCTGACCCCAGCGCTCGTCGCGCA ACCCATTCATACTGGTCCAGGCCCCACCTACCCCCAAGCCAATAACCCTC AGTATCCTGTCAATTCCCAGCCCTCGCAACTCGAAGCCCGGCAGGCCGCA GAAGCCCGGGCAGCTCTGGTAGAGCAAATGATCGAGGCCAGCAAGGAAGG GAATGTGGCTGTCGCGCATGCTCTCTTGCTCCAAGACCCTACCCTTGCCT CCTGCCGTGACAGCGTGGGACAGTCCCCCCTAATGTGGGCCGCTTACAAA GGGTATACTGCCTTAGCCGTCCTCTTGATTCAAACCAACGCCCCCGTGGA CGACCACGACTGTCAATCCTCTCGCTCCGCCCTGTACATGGCTTGCGAAT TTGGGAACTGGCCTGTGGCCTCCTTGCTCCTCCAACACGGCGCCAACCCT TCCTTCCGCCGTCAACTATACGGACGAACCTGCCTTCAAATCGCCGCCTA CAATAACCATGCCCACGTCGTGCAGGGTGTCCTGGCTTTTGCTGCTTCCT GCCCTCCATCCTGTCCTACCCCCTGCGTGGTCGATGTGAATGCGGTAGAT AACCACGGCTCCACTGCGCTTCACCTGGCCATCCGCGAGGACCCCCAGCA GGCCATTTCCCTCCACCCCTCCAACGCATCATCATCTTCTTTCGACATAA GTGACACAGTCCGCGTATTGCTGTCATGGGGGGCGGACCCCTTAATTCCT AACCTGGCCGGGGCTCTACCGGTAACGGCCGCGCAACGGTTGCAGCACGC AAAGTGTCTTTCCCTCCTGACGGGATGGGAGCGCATGGCACTTGTTCACA AGGCGAGGTTATGCGTGACGGAGGCCAGGCAAATGGAAGCGCATGTGGCG ATGGAATTCGCCGCCTTGGGAAGGAAGGAGGAGAAGAGGCAGAGGAATGA GTGGGGAGAGGTGAGGGAGGAGGAGACCTTGCCAGATGGATGGACAGCTG TCCCACGCCAGCAGCACCAACGCTCGTCTTCCAACTTTTTTTCCTCCTTT TCCTCAATTTCGATGCGTGACCCGAAGGTGCGGATGGGTGGGAAAGGAAG GAAAGGGAGGGAGGGAGGGAGGGACGGGCCGTCCAAGCCATCTTTGTTTA CTCTGGGTCTTCGGCAAAGCGAGAGCATCAGCATCAGCAGCAGCAGCAGC AGCAGCAGCACTAGTAGCAGTAGCAGCAGTCCCAATGGCCAAGCAATAAG CTTAAGCCTGAGTGGTAGCGGGGCGACCTTTTACTCTCTCCCGTCTCTCC CCTCCATCCCAATCACCCTGCCCGTGCTGGAGAAACCCCGCCCTCCCTCC TTCCCTCCCTCCTTCCCTCCCTACTCTGTCAAGGGGGGAGATGCGATGGG GGTGAGCGGTGCTGGGGGGCTTACCTGTGATGAGGGAGGGAGGGAAGAAG GGAGGACTGGGGAGCAAGGGGTGGAGGGAGAGGGGGGGGGGAGCTGGGAA TGCGGAAGGAGGCGATTGCGTATGTTGTTCATAAGATGA back to top