|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr20 | genome | chr20:649537..654946 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G02170.1 vs.
Match: XP_005852621.1 (hypothetical protein NGA_0713600 [Nannochloropsis gaditana CCMP526]; EKU23211.1 hypothetical protein NGA_0713600 [Nannochloropsis gaditana CCMP526]; EWM22017.1 hypothetical protein Naga_100361g3 [Nannochloropsis gaditana]) HSP 1 Score: 282.7 bits (722), Expect = 1.200e-72 Identity = 141/258 (54.65%), Postives = 181/258 (70.16%), Query Frame = 0
Query: 7 LVGLASLATALGNGYRTNDNLQSRPGPNRTDECPFYFNTSPSSNTAVGSPQ-FGSLLDSVSYSVTFPKMRWGRKTWIQLRFFSNVQDLPFENVKFCIMPYSNTPDDDKYAPEFQNRVKYAPRIRGPQPLIELNSNVSLPYVNATGSGQGFDTVCVTVPSVKAKGIQRVNFQYASDRCTVLLKWKGWVEFDNPFYSLYPTTAPQRCFANQNPSGPDNFNPVKTYEAENLNIPQSCGTCTPGRNCKGDNKVREPKAKKNK 264
+ GL L+ LGN + L+SRPGPNRT ECP++FN PS+ T +G+ FG L+DSV YS+TF K+RWGR TWIQ RF+SNVQDLP E+V FC M Y+ TP +Y+P +Q RV+++PR++GPQP + NVS PY +G GF+TVCVTVP VKA+G Q+V F Y+S+ C+ + +KGWVEF NPF SLYP TAP C A + S P+ FN V+TY ++N NIP SCGTCTPGRNCKG N+ K N+
Sbjct: 14 VAGLLPLSV-LGN--KPQAPLESRPGPNRTTECPYFFNPKPSALTGIGNATTFGPLVDSVDYSLTFQKIRWGRNTWIQGRFYSNVQDLPIEDVTFCNMLYNYTPGGLEYSPLYQGRVRFSPRVKGPQPQPVVYPNVSTPYT----TGDGFETVCVTVPYVKARGRQKVRFLYSSNICSTQVTFKGWVEFKNPFASLYPATAPATCEAAEVNSAPNTFNKVRTYGSDNRNIPVSCGTCTPGRNCKG-NRAAHTNRKDNR 263
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO20G02170.1 ID=NO20G02170.1|Name=NO20G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2582bp CTGGCCGACATTTTTTTTGGGTACATCTACAAGACTTCATCTTCCAAACT GATATGCATTACACATCGATGCGGTTTCAACAGCGACCCACGACAGATAA AGAAAATCACCAGCAATGGAAACCATGAGAACTCTGGGTTGTTATCACCG TCTGCAAAGAAATCCTGCATGCACCACACCCATCCTTGTATTCTGCACTT CGCACTATATGCTTTTGATGTGTTTTACGACAGATTACCCGGAAGTGGTT TAAATTTTGAAAGCGGCGCTGTGGCTTTGAAGATCCTCTTCTTGTCTTCC AAGATGCAACCATCGGCTAGGAATCGACTCCAATGATTTGGGGACATGAA CACCAGACTGCTACACGATACTCTTAGAAAGCTTGTCTGTGTGAACTTAG ATCTCTGTCTGACCCTCTGAATGGGCTGCAAACGATCCCTTGAATCTCGA CGATCGCCCACCCCCGTTAAGCGCACGATTCTCTCTCCGGCAACCCGTTG CTTCACGTACGTCGCGCAAGGCGATTGCATTTCGCAGGGCACACAAAGAT TTCCACCCATCACTCTACCAGAGTTTTAATGTCACCAATCTGAAGTGTCT AGACGTCTGGCTGACAATCAAATTAAAGCATCAAGCGTGTCTTAAGCATC GGTTGTCGCTAGGTAACCCTTGAGCTTTTGAATGTCCACAGGAGAATGTT CATGCATCATGCCTCAGAAGTGATTCTGTATCTATCATGCTGCTGCCCTG AAAAAAGTAGCAAGCAATCCCACAGAAAATTCTTCAGGTTATCGTGATGG ATGTCCAAGATCAAAAAGATATATTTAGTTAAGCCAAAAAGGCGAGTGCA ACCGATTTGAACGAGTTCGACCGCGGTCTGGAAGTAGAGGCTCCTCAACG GAATTTTGCAAAGAAAACTTAAACTCGAGGAGAGAGAAGATTCGTTTCTT TACTGGCTTGATTTGGTGCAGAGGAGTTGAGCATCTCGCGTCGGATTGCT CATTCTTGGCCTTCTTCAAGCAATGTGTCCTTCCTGTGAACGATGTGAAC GGAATCGAACGTGGCCCATCACCACCGTATGCATGCCTTTAGGGAGTGTT GAATCTCTGGGACGGCAGTCCTGTCCTCTTATCCTTGCCGCTTGTTTCTC TTCTTCTTGCTTCTCCTGTGTCGACGGACGTCTTAATATTCATTCCTTTA CCACACCTTCCACAGATCACCATGCGATCCTTGACTGCCCTCGTGGGCCT GGCCAGCCTTGCTACCGCGCTCGGCAACGGGTATAGAACCAATGACAACC TGCAGTCCCGCCCCGGGCCCAACCGTACTGATGAGTGCCCATTCTATTTC AACACTAGCCCCAGTTCCAATACGGCCGTGGGCTCCCCTCAATTCGGCTC GCTCCTCGACTCTGTCTCTTACTCGGTCACCTTCCCGAAGATGAGGTGGG GTCGCAAAACGTGGATCCAGCTCCGTTTCTTCAGCAACGTCCAGGACTTG CCCTTCGAGAATGTGAAGTTCTGCATCATGCCTTACTCCAACACGCCGGA CGACGATAAGTACGCGCCCGAGTTCCAAAACCGGGTCAAGTACGCCCCTC GCATCAGGGGTCCCCAGCCCCTGATTGAGCTCAACAGCAACGTGAGCTTA CCGTACGTGAACGCCACGGGCTCGGGGCAAGGCTTCGACACAGTGTGTGT AACTGTACCAAGTGTAAAGGCGAAGGGCATCCAGAGGGTGAACTTCCAGT ACGCTTCCGACCGGTGCACCGTCTTGCTCAAGTGGAAGGGATGGGTGGAG TTCGACAATCCGTTCTACTCCCTCTACCCTACCACCGCGCCTCAGCGTTG CTTTGCAAACCAGAACCCCTCGGGCCCTGACAACTTTAACCCTGTTAAGA CCTACGAGGCCGAGAACTTGAATATACCCCAGAGCTGTGGGACCTGTACA CCTGGTCGGAACTGCAAGGGCGACAATAAGGTCAGGGAGCCCAAGGCTAA GAAGAACAAAACCACGTGAAAGTAATCCTTTTTCGGTAGTTATTGGATTC ACTTCTTACAAGAAATGAAGGGAGGGGGATGGACCAGCCGCATGGCCTGT GTCAGGGAAATCAGTCATGGTCAAGGCGGCGTCAGTACGTGTCACTACGT GTCACGTGTAGTATGAGTAGTAGAGTAATTTATCAATGATCAAGTGTGAA ATAAGGAGTGGGTCAGCCACGCGTGTTTTTGTGCGACTTGTAAGAATAGC GGTAGGAAGCGAGAGAGACATAAGTGGAAGAAGGAAGGAGGAAACGGAGG TGGTATAAGGGAGGCGTGCCGATGCAGGTAGGATGAAGCGTTCCCTCCCT GCTATATTGCACTGGGGAAGACAAGGCGATGTATTCATGTGCAGCACAGT TCTAGGAGGAGGGAAAGATAAAAAGAATGACTCGGTTGAGTCCTGGAATG TGATGGGATGGGACAAGCGCGCAGGTTTCTCGTCCGCAGTCGCCCAGAGG GGGGAAAAATAAAGATTCAAATATACTATACTACTAGAGGAGTATGTGAT GATATAGTGACCGTTGATCGACGAGAGAAGCT back to topprotein sequence of NO20G02170.1 >NO20G02170.1-protein ID=NO20G02170.1-protein|Name=NO20G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp MRSLTALVGLASLATALGNGYRTNDNLQSRPGPNRTDECPFYFNTSPSSN TAVGSPQFGSLLDSVSYSVTFPKMRWGRKTWIQLRFFSNVQDLPFENVKF CIMPYSNTPDDDKYAPEFQNRVKYAPRIRGPQPLIELNSNVSLPYVNATG SGQGFDTVCVTVPSVKAKGIQRVNFQYASDRCTVLLKWKGWVEFDNPFYS LYPTTAPQRCFANQNPSGPDNFNPVKTYEAENLNIPQSCGTCTPGRNCKG DNKVREPKAKKNKTT* back to topmRNA from alignment at chr20:649537..654946+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO20G02170.1 ID=NO20G02170.1|Name=NO20G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=5410bp|location=Sequence derived from alignment at chr20:649537..654946+ (Nannochloropsis oceanica) CTGGCCGACATTTTTTTTGGGTACATCTACAAGACTTCATCTTCCAAACT
GATATGCATTACACATCGATGCGGTTTCAACAGCGACCCACGACAGATAA
AGAAAATCACCAGCAATGGAAACCATGAGAACTCTGGGTTGTTATCACCG
TCTGCAAAGAAATCCTGCATGCACCACACCCATCCTTGTATTCTGCACTT
CGCACTATATGCTTTTGATGTGTTTTACGACAGATTACCCGGAAGTGGTT
TAAATTTTGAAAGCGGCGCTGTGGCTTTGAAGATCCTCTTCTTGTCTTCC
AAGATGCAACCATCGGCTAGGAATCGACTCCAATGATTTGGGGACATGAA
CACCAGACTGCTACACGATACTCTTAGAAAGCTTGTCTGTGTGAACTTAG
ATCTCTGTCTGACCCTCTGAATGGGCTGCAAACGATCCCTTGAATCTCGA
CGATCGCCCACCCCCGTTAAGCGCACGATTCTCTCTCCGGCAACCCGTTG
CTTCACGTACGTCGCGCAAGGCGATTGCATTTCGCAGGGCACACAAAGAT
TTCCACCCATCACTCTACCAGAGTTTTAATGTCACCAATCTGAAGTGTCT
AGACGTCTGGCTGACAATCAAATTAAAGCATCAAGCGTGTCTTAAGCATC
GGTTGTCGCTAGGTAACCCTTGAGCTTTTGAATGTCCACAGGAGAATGTT
CATGCATCATGCCTCAGAAGTGATTCTGTATCTATCATGCTGCTGCCCTG
AAAAAAGTAGCAAGCAATCCCACAGAAAATTCTTCAGGTTATCGTGATGG
ATGTCCAAGATCAAAAAGATATATTTAGTTAAGCCAAAAAGGCGAGTGCA
ACCGATTTGAACGAGTTCGACCGCGGTCTGGAAGTAGAGGCTCCTCAACG
GAATTTTGCAAAGAAAACTTAAACTCGAGGAGAGAGAAGATTCGTTTCTT
TACTGGCTTGATTTGGTGCAGAGGAGTTGAGCATCTCGCGTCGGATTGCT
CATTCTTGGCCTTCTTCAAGCAATGTGTCCTTCCTGTGAACGATGTGAAC
GGAATCGAACGTGGCCCATCACCACCGTATGCATGCCTTTAGGGAGTGTT
GAATCTCTGGGACGGCAGTCCTGTCCTCTTATCCTTGCCGCTTGTTTCTC
TTCTTCTTGCTTCTCCTGTGTCGACGGACGTCTTAATATTCATTCCTTTA
CCACACCTTCCACAGATCACCATGCGATCCTTGACTGCCCTCGTGGGCCT
GGCCAGCCTTGCTACCGCGCTCGGCAACGGGTATAGAACCAATGGTACGT
GTGCGAGAGTCTGTGCATGCTCCGCAGCGGCCTTTGATCACTCGGTCGCC
AATTACGTTCGTCCTCTTCTTTCCTCCCTTCCTCCCTCCTTCACTCTCCC
CTTTTCCCTCCTGTACACAGACAACCTGCAGTCCCGCCCCGGGCCCAACC
GTACTGATGAGTGCCCATTCTATTTCAACACTAGCCCCAGTTCCAATACG
GTAAGTTTGTACGCTTATATATGTCGTTCCAACCATTTTTTCCTCCTCTC
TCTGGTATACCGTTTTGGCCTCCCACTCTGCTTTTTTAATCCAACTCGAG
AGCATATGTCCCTTCTAATCATCGCTTTGTGGTCTCTCCCTCACTTTCAA
ACTCCCGCAGGCCGTGGGCTCCCCTCAATTCGGCTCGCTCCTCGACTCTG
TCTCTTACTCGGTCACCTTCCCGAAGATGAGGTGGGGTCGCAAAACGTGG
ATCCAGCTCCGTTTCTTCAGCAACGTCCAGGACTTGCCCTTCGAGAATGT
GAAGTTCTGCATCATGCCTTACTCCAACACGCCGGACGACGATAAGTACG
CGCCCGAGTTCCAAAACCGGGTCAAGTACGCCCCTCGCATCAGGGGTCCC
CAGCCCCTGATTGAGCTCAACAGCAACGTGAGCTTACCGTACGTGAACGC
CACGGGCTCGGGGCAAGGCTTCGACACAGTGTGTGTAACTGTACCAAGTG
TAAAGGCGAAGGGCATCCAGAGGGTGAACTTCCAGTACGCTTCCGACCGG
TGCACCGTCTTGCTCAAGTGGAAGGGATGGGTGGAGTTCGACAATCCGTT
CTACTCCCTCTACCCTACCACCGCGCCTCAGCGTTGCTTTGCAAACCAGA
ACCCCTCGGGCCCTGACAACTTTAACCCTGTTAAGACCTACGAGGTTCGT
CTTGTTTGTATCTCTCTCTCCCTCTCTCCCTCTTTCCTCCTCCTTTTTCA
GCTTGTGCTTATCATGATTGCGGCTTGTCCCTCCTTCCCTCCCTTCTTTC
CTTCTTCCTCGCCATCATTGTACGGAGGGGGGGACTGATTTTCCCCTTCC
CTTTCTTGTCCAGCTGTTGAAATATCTCATTCCTTTCGTCTTTCCCCTTC
CCCCTCCCCTTCCTCCCTCCCTCCCTCTTAACCCCTCCCACCCCTCCACC
CCTCCTCCAGGCCGAGAACTTGAATATACCCCAGAGCTGTGGGACCTGTA
CACCTGGTCGGAACTGCAAGGGCGACAATAAGGTCAAGGAGCCTAAGACC
AAGAAGAACAAAACCACGTAATCCTTGATTATTTCACCATGAGGGATGGA
CCGGCTACAGGCACCTTTGTCAGGAAAATTAGTCATGGGCAAGGTTGCGT
CAGTACGTATCATTGTGTGTCACGTCTTGTTCGAGTAGTAAGAAAAAATA
TTTTTATTGTTGGAGGGAGATGAATTGTTGTGGAGGAAAGAAAGAGGTTG
AGAGTAGAGAAGGGGGTGTATGTGTGTGAAGAAAAGAAGTGTTATCATGG
TGGCCTGGGCAAAAAAAGGATAAAGCATAGGATTGGACATCACAAAACAC
CACAAGCACTGCAAGTACATACATGCACAGACAGACCCCGCCCACCCTGC
ATATAAAGCCTGCTTTGCCTTGGCCAACCTCCTGCCTCTGTCTCTTGCAG
AAACTTGACAGCTTAACGGCCCATTAGCAGTTGGAACAAGACCAAGCGCC
CTCTCCTCTCCCAAGCCTGCGAGTCGAGAAGAAGATTCACCCAAGGGTGT
TTGGCCCTCTCTCTCCGCACCCGCTGTCTATCTCGTCCTCCGAACGTGCT
TCTTTGCATGGGGCTTGGTAATGCACGCGGTGGTGATGCGGGTGGATGGC
CATTGGTTGGACCAAGGCATGGCATTGCAGGCAGACAATGGGCCCGGCGA
GGGTCTGTCATTTTTCTTTCGTTTGGTTTATTCCATGCATGTTTCACGCG
TACTCGTGCACTGAATCTCAGCCTTTCTTGCATGTTCGTATGTCTTAGTG
TCAGGCCGTCCTTCTATCTCCACTTGGATGGACCTGGTCCTCCTTTCACA
CGCATTTCCCATACACTCATTTTGCACCGTTTATACCCAGGCCTGAACTG
ACCATACCGCACAAACAATCATATATACCTAAACCATGCTTTTGTCCTTG
TACGATGCCATCATGAAATTCACACATACCAGTTTCCTGTAGCGCTCTTC
CCCGTACATATAAACCAGGACCCGACAAAAACCATGCGATCCTTGAGTGC
TCTTCTTGGCCTAGCCGGCCTTGCCACCGTGGTTGGCAACGAGAGACTTA
TTGGTACGTGCACAAGACTGTGTAATCACGTTTTGTCTGGATATATAAAC
CATTTTGCCCGTCAACGATATCCATCCTCTCCTTCCTGTCCATCCCTCCC
GCCCTCCCTTCTCTCCTCCCCCAAACCCCTCCCACGAATCTAGACACCAT
GCAGTTCCGCGCTGCGCCTAATCGCACTGATGAATGCCCGGTCTTTTTCA
ACACTGATCCCGACTTCAATACGGTAAGTATGTACGCTCTTTAGCTCCCC
CCCCGCATACTACACGGCCTCCCCATCCTACTCCCCCCCCCTCATGAGAG
CATATGTCCCTCCTTCCGACACCATTTCCTCCTCATCCTTCCCCCACTTT
CTTACTCTCGCAGATTGTGGGCTCCGAAAACTTCGGCTCGCTCCTCGACT
CTGTCTCTTACTCGGTCACCTTCCCGAAGATGAGGTGGGGTCGCAAAACG
TGGATCCAGCTCCGCTTCTACAGCAACGTCCAGGACTTGCCCTTCGAGAA
TGTGAAGTTCTGCATCATGCCTTACTCCAACACGCCGGACGACGATAAGT
ACGCGCCCGAGTTCCAAAACCGGGTCAAGTACGCCCCTCGCATCAGGGGT
CCCCAGCCCCTGATTGAGCTCAACAGCAACGTGAGCTTACCGTACGTGAA
CGCCACGGGCTCGGGGCAAGGCTTCGACACAGTGTGTGTAACTGTACCAA
GTGTAAAGGCGAAGGGCATCCAGAAGGTGAACTTCCAGTACGCCTCCGAC
CGGTGCACTACCGAGCTCGTCTGGAAGGGATGGGTGGAGTTCGACAATCC
GTTCTACTCCCTCTACCCTACCACCGCGCCTCAGCGTTGCTTTGCAAACC
AGAACCCCTCGGGCCCTGACAACTTTAACCCTGTTGAGACTTATGGAGTG
AGTAGTTTTGTATCTCTCTCTCCCTCTCTCCCTCTTTCCTCCTCCTTTTC
GCTTGTGCTCACCATGATTGCGGCTTCTCCCTCCCTCCCTCCCTCCCCCT
CCTCCCAACCTTTTCTCCATCATTGTACGGAGGGGGGGAAACGAGGATGA
AATCCCCCTTCCCTTTCTTGTCCAACTGTTCAAACATCTCGTTTCCCTTT
CCCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCCCAGAACCTGAA
GGTTCCCAAAAGCTGTGGCACATGCACGCCTGGTGTAAACTGCAAGGGCG
ACAATAAGGTCAGGGAGCCCAAGGCTAAGAAGAACAAAACCACGTGAAAG
TAATCCTTTTTCGGTAGTTATTGGATTCACTTCTTACAAGAAATGAAGGG
AGGGGGATGGACCAGCCGCATGGCCTGTGTCAGGGAAATCAGTCATGGTC
AAGGCGGCGTCAGTACGTGTCACTACGTGTCACGTGTAGTATGAGTAGTA
GAGTAATTTATCAATGATCAAGTGTGAAATAAGGAGTGGGTCAGCCACGC
GTGTTTTTGTGCGACTTGTAAGAATAGCGGTAGGAAGCGAGAGAGACATA
AGTGGAAGAAGGAAGGAGGAAACGGAGGTGGTATAAGGGAGGCGTGCCGA
TGCAGGTAGGATGAAGCGTTCCCTCCCTGCTATATTGCACTGGGGAAGAC
AAGGCGATGTATTCATGTGCAGCACAGTTCTAGGAGGAGGGAAAGATAAA
AAGAATGACTCGGTTGAGTCCTGGAATGTGATGGGATGGGACAAGCGCGC
AGGTTTCTCGTCCGCAGTCGCCCAGAGGGGGGAAAAATAAAGATTCAAAT
ATACTATACTACTAGAGGAGTATGTGATGATATAGTGACCGTTGATCGAC
GAGAGAAGCT back to topCoding sequence (CDS) from alignment at chr20:649537..654946+ >NO20G02170.1 ID=NO20G02170.1|Name=NO20G02170.1|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at chr20:649537..654946+ (Nannochloropsis oceanica) ATGCGATCCTTGACTGCCCTCGTGGGCCTGGCCAGCCTTGCTACCGCGCT CGGCAACGGGTATAGAACCAATGACAACCTGCAGTCCCGCCCCGGGCCCA ACCGTACTGATGAGTGCCCATTCTATTTCAACACTAGCCCCAGTTCCAAT ACGGCCGTGGGCTCCCCTCAATTCGGCTCGCTCCTCGACTCTGTCTCTTA CTCGGTCACCTTCCCGAAGATGAGGTGGGGTCGCAAAACGTGGATCCAGC TCCGTTTCTTCAGCAACGTCCAGGACTTGCCCTTCGAGAATGTGAAGTTC TGCATCATGCCTTACTCCAACACGCCGGACGACGATAAGTACGCGCCCGA GTTCCAAAACCGGGTCAAGTACGCCCCTCGCATCAGGGGTCCCCAGCCCC TGATTGAGCTCAACAGCAACGTGAGCTTACCGTACGTGAACGCCACGGGC TCGGGGCAAGGCTTCGACACAGTGTGTGTAACTGTACCAAGTGTAAAGGC GAAGGGCATCCAGAGGGTGAACTTCCAGTACGCTTCCGACCGGTGCACCG TCTTGCTCAAGTGGAAGGGATGGGTGGAGTTCGACAATCCGTTCTACTCC CTCTACCCTACCACCGCGCCTCAGCGTTGCTTTGCAAACCAGAACCCCTC GGGCCCTGACAACTTTAACCCTGTTAAGACCTACGAGGCCGAGAACTTGA ATATACCCCAGAGCTGTGGGACCTGTACACCTGGTCGGAACTGCAAGGGC GACAATAAGGTCAGGGAGCCCAAGGCTAAGAAGAACAAAACCACGTGA back to top
|