NO20G01960.1, NO20G01960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01960.1
Unique NameNO20G01960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length882
Alignment locationchr20:583305..584186 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:583305..584186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO20G01960.1 vs.
Match: XP_005856090.1 (hypothetical protein NGA_2078500 [Nannochloropsis gaditana CCMP526]; EKU20271.1 hypothetical protein NGA_2078500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 288.1 bits (736), Expect = 3.000e-74
Identity = 163/293 (55.63%), Postives = 203/293 (69.28%), Query Frame = 0 
Query:    1 MSFSFSFDLPAEPLTTSSANPEPLPLPHPPSGPSSTLTPVAPARLIQFIVPPVLPLSRSVSLLGDSGGSHQVGTGASIRIVESVAGVMVDVPDGVDLVPGVYEGGLKVWESSVDLVRYLQQHNLVQLHHRVLELGCGHGLPGIHALQQGAASVTFLDLNEEVLREVTGPNICLNVDSTDDLSKRVTLVSGDWEAASEVLNQHVPAAFDVIVSAETFYTSLVTEKLLNTIHRHLARQPPGAVAIVAGKRYYFGTGGSVVDLGARASALGFESRVVASVEDGKSNIRDLIEITWK 294
            MSF+F FDLP+ P TTS+   +   L   PS  ++     +  R+I        P   S+S+L  +    +       R+V++V GV+ D+P+G DLVPGVYEGGLK+WESS DLV YLQ   +++  +RVLELGCGHGLPGIHALQQGA SV F DLNEEVLREVT PNI LNV +    S R++L+ GDWEA  ++L    P  F+VIVSAETFYT  VT KLL  IHR+LA+ P  A+A+VAGKRYYFGTGGSV +L ++ASALG  SRVVAS EDG+SNIRD++EI  K
Sbjct:    1 MSFTFGFDLPSNPSTTSNTVAQ---LGASPSSHTTWGHATSTPRVIHLDELTTAPAFCSISVLTRTYDDPK----GHFRVVKNVEGVIADLPEGSDLVPGVYEGGLKIWESSKDLVCYLQNQRIIRPPYRVLELGCGHGLPGIHALQQGADSVVFSDLNEEVLREVTRPNIFLNVANRALSSARISLICGDWEALPQILGVDKPVDFNVIVSAETFYTPAVTNKLLRCIHRYLAKTPE-ALALVAGKRYYFGTGGSVANLMSQASALGMRSRVVASSEDGRSNIRDIVEIRCK 285
The following BLAST results are available for this feature:
BLAST of NO20G01960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856090.13.000e-7455.63hypothetical protein NGA_2078500 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01960NO20G01960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01960.1NO20G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01960.1.cds1NO20G01960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01960.1 ID=NO20G01960.1|Name=NO20G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
ATGTCCTTTTCCTTCAGCTTTGATCTTCCTGCCGAGCCGTTGACCACTTC
CAGCGCCAACCCCGAGCCCCTACCACTGCCCCACCCGCCATCAGGCCCGT
CGTCGACGCTCACCCCAGTGGCACCGGCTCGTCTCATCCAATTTATCGTG
CCCCCGGTATTACCTCTGTCGCGGAGCGTGTCACTGTTGGGCGATAGCGG
GGGTAGTCACCAGGTAGGCACTGGTGCTTCCATTCGGATAGTGGAGAGCG
TGGCTGGGGTGATGGTGGATGTGCCAGATGGAGTGGACCTGGTGCCCGGC
GTGTACGAAGGCGGACTCAAAGTGTGGGAATCCAGCGTGGATCTCGTACG
CTATCTTCAGCAGCACAACTTGGTGCAATTGCACCACCGTGTGCTAGAGT
TGGGCTGTGGTCATGGGCTGCCGGGCATCCACGCTTTGCAGCAAGGCGCC
GCAAGCGTGACCTTCTTGGACTTGAACGAAGAGGTGCTGCGCGAAGTGAC
CGGTCCCAACATTTGCCTCAATGTTGATAGTACGGATGACTTGTCAAAGA
GGGTAACCTTGGTCAGCGGTGACTGGGAAGCGGCATCCGAGGTTTTGAAT
CAGCATGTTCCGGCAGCGTTCGACGTGATCGTGAGCGCCGAGACCTTCTA
CACCTCCCTCGTGACGGAGAAGCTTCTAAACACCATCCATCGTCACCTCG
CACGACAACCGCCAGGAGCCGTTGCCATTGTGGCTGGCAAGCGATACTAC
TTTGGCACAGGGGGATCTGTGGTGGATCTAGGGGCTCGAGCCAGTGCCTT
AGGTTTTGAGTCCCGGGTGGTGGCCTCGGTGGAGGATGGCAAGAGCAACA
TTCGCGATCTGATAGAAATCACATGGAAATAG
back to top

protein sequence of NO20G01960.1

>NO20G01960.1-protein ID=NO20G01960.1-protein|Name=NO20G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MSFSFSFDLPAEPLTTSSANPEPLPLPHPPSGPSSTLTPVAPARLIQFIV
PPVLPLSRSVSLLGDSGGSHQVGTGASIRIVESVAGVMVDVPDGVDLVPG
VYEGGLKVWESSVDLVRYLQQHNLVQLHHRVLELGCGHGLPGIHALQQGA
ASVTFLDLNEEVLREVTGPNICLNVDSTDDLSKRVTLVSGDWEAASEVLN
QHVPAAFDVIVSAETFYTSLVTEKLLNTIHRHLARQPPGAVAIVAGKRYY
FGTGGSVVDLGARASALGFESRVVASVEDGKSNIRDLIEITWK*
back to top

mRNA from alignment at chr20:583305..584186+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01960.1 ID=NO20G01960.1|Name=NO20G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=882bp|location=Sequence derived from alignment at chr20:583305..584186+ (Nannochloropsis oceanica)
ATGTCCTTTTCCTTCAGCTTTGATCTTCCTGCCGAGCCGTTGACCACTTC
CAGCGCCAACCCCGAGCCCCTACCACTGCCCCACCCGCCATCAGGCCCGT
CGTCGACGCTCACCCCAGTGGCACCGGCTCGTCTCATCCAATTTATCGTG
CCCCCGGTATTACCTCTGTCGCGGAGCGTGTCACTGTTGGGCGATAGCGG
GGGTAGTCACCAGGTAGGCACTGGTGCTTCCATTCGGATAGTGGAGAGCG
TGGCTGGGGTGATGGTGGATGTGCCAGATGGAGTGGACCTGGTGCCCGGC
GTGTACGAAGGCGGACTCAAAGTGTGGGAATCCAGCGTGGATCTCGTACG
CTATCTTCAGCAGCACAACTTGGTGCAATTGCACCACCGTGTGCTAGAGT
TGGGCTGTGGTCATGGGCTGCCGGGCATCCACGCTTTGCAGCAAGGCGCC
GCAAGCGTGACCTTCTTGGACTTGAACGAAGAGGTGCTGCGCGAAGTGAC
CGGTCCCAACATTTGCCTCAATGTTGATAGTACGGATGACTTGTCAAAGA
GGGTAACCTTGGTCAGCGGTGACTGGGAAGCGGCATCCGAGGTTTTGAAT
CAGCATGTTCCGGCAGCGTTCGACGTGATCGTGAGCGCCGAGACCTTCTA
CACCTCCCTCGTGACGGAGAAGCTTCTAAACACCATCCATCGTCACCTCG
CACGACAACCGCCAGGAGCCGTTGCCATTGTGGCTGGCAAGCGATACTAC
TTTGGCACAGGGGGATCTGTGGTGGATCTAGGGGCTCGAGCCAGTGCCTT
AGGTTTTGAGTCCCGGGTGGTGGCCTCGGTGGAGGATGGCAAGAGCAACA
TTCGCGATCTGATAGAAATCACATGGAAATAG
back to top

Coding sequence (CDS) from alignment at chr20:583305..584186+

>NO20G01960.1 ID=NO20G01960.1|Name=NO20G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr20:583305..584186+ (Nannochloropsis oceanica)
ATGTCCTTTTCCTTCAGCTTTGATCTTCCTGCCGAGCCGTTGACCACTTC
CAGCGCCAACCCCGAGCCCCTACCACTGCCCCACCCGCCATCAGGCCCGT
CGTCGACGCTCACCCCAGTGGCACCGGCTCGTCTCATCCAATTTATCGTG
CCCCCGGTATTACCTCTGTCGCGGAGCGTGTCACTGTTGGGCGATAGCGG
GGGTAGTCACCAGGTAGGCACTGGTGCTTCCATTCGGATAGTGGAGAGCG
TGGCTGGGGTGATGGTGGATGTGCCAGATGGAGTGGACCTGGTGCCCGGC
GTGTACGAAGGCGGACTCAAAGTGTGGGAATCCAGCGTGGATCTCGTACG
CTATCTTCAGCAGCACAACTTGGTGCAATTGCACCACCGTGTGCTAGAGT
TGGGCTGTGGTCATGGGCTGCCGGGCATCCACGCTTTGCAGCAAGGCGCC
GCAAGCGTGACCTTCTTGGACTTGAACGAAGAGGTGCTGCGCGAAGTGAC
CGGTCCCAACATTTGCCTCAATGTTGATAGTACGGATGACTTGTCAAAGA
GGGTAACCTTGGTCAGCGGTGACTGGGAAGCGGCATCCGAGGTTTTGAAT
CAGCATGTTCCGGCAGCGTTCGACGTGATCGTGAGCGCCGAGACCTTCTA
CACCTCCCTCGTGACGGAGAAGCTTCTAAACACCATCCATCGTCACCTCG
CACGACAACCGCCAGGAGCCGTTGCCATTGTGGCTGGCAAGCGATACTAC
TTTGGCACAGGGGGATCTGTGGTGGATCTAGGGGCTCGAGCCAGTGCCTT
AGGTTTTGAGTCCCGGGTGGTGGCCTCGGTGGAGGATGGCAAGAGCAACA
TTCGCGATCTGATAGAAATCACATGGAAATAG
back to top
Synonyms
Publications