NO20G01920.1, NO20G01920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01920.1
Unique NameNO20G01920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1143
Alignment locationchr20:577684..579088 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:577684..579088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01920.1 vs.
Match: EWM22051.1 (der1-like domain member 1 [Nannochloropsis gaditana])

HSP 1 Score: 489.2 bits (1258), Expect = 1.200e-134
Identity = 253/390 (64.87%), Postives = 299/390 (76.67%), Query Frame = 0 
Query:    1 MRQRGTEV--SRRPWSILMLLLVMSGLQCLGVEAVQPPQRKLGIVQPH------LKRLGTKDSLPSPALVLSRRRDLAIRSSSRGEGADSPSRWLTRVRGGVQPAKSKSKVKATAPTATGNKIRYAGEAGTKQKVKEWYKATPIITRVQLSTSLLLTALGLVAIDPSYFLLDPVKIVTGLQLWRPFTAAAFMGPPSMSWVSNLYFLHQYGTALENSEGAAQQLVFLLFNIAVLSFLGSLIGLPVTSNALITAALHCLGRQDPLRDVNWMFAIKIKYWMLPFCLALVDMLQAQNPMAALPAALGILSGHLYYFLRNVWPQMGHRELLLAPEWWCKLLNRNNDDIIFRRDKRPLV--GADGSAGGTGSGGSLTSILPKKKKSKIYKMKKTSS 381
            M Q G +   +R  W++L++LL  + LQ   +EA Q P  KL + +         KRL  +    S   V    +        +  G  +P RWL R RGGVQPA+ KSKVKA  P A GNKIRYA EA TKQKVKEWY+ATP++TR+ L+ SL+LT LG++ +DP+YFLLDPV+ +T  Q+WRPFTAAAF+GPPSMSWVSNLYFLHQYGTALE S+G AQQLVFLLFNI VLS LGSL+GLP+TSNALITAALHCLGRQDPLRDVNWMF+IKIKYWMLPFCLALVDMLQAQNP+AALPAALGILSGH+YYFLR VWP+MGHRELLLAPEW CK+LNR+NDD+IF+R  +PLV  GA  S G +G   +L+S+L  KKKSK+YKMKKT S
Sbjct:    1 MWQEGAQAGKARWLWTLLLILLTTTSLQSTRLEAPQQPPSKLSLKRRSPCRSEATKRLKNRSYASSCGYVFDSHQSFG--PPGKNGGQTNPVRWLARARGGVQPAQKKSKVKANGPAAQGNKIRYAKEASTKQKVKEWYQATPLVTRLHLTASLVLTGLGIIILDPAYFLLDPVRTITKAQIWRPFTAAAFLGPPSMSWVSNLYFLHQYGTALEKSQGTAQQLVFLLFNIGVLSVLGSLMGLPITSNALITAALHCLGRQDPLRDVNWMFSIKIKYWMLPFCLALVDMLQAQNPLAALPAALGILSGHMYYFLRQVWPKMGHRELLLAPEWLCKVLNRHNDDVIFQRRNKPLVTTGASSSEGESGVLPNLSSVL--KKKSKVYKMKKTPS 386
The following BLAST results are available for this feature:
BLAST of NO20G01920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22051.11.200e-13464.87der1-like domain member 1 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01920NO20G01920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01920.1NO20G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01920.1.cds1NO20G01920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01920.1.cds2NO20G01920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01920.1.cds3NO20G01920.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01920.1.cds4NO20G01920.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01920.1 ID=NO20G01920.1|Name=NO20G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1143bp
ATGCGGCAGCGGGGCACTGAAGTCAGTCGGCGGCCATGGAGCATCCTGAT
GCTGCTGCTTGTGATGAGCGGCCTGCAATGCCTTGGCGTAGAGGCCGTCC
AGCCACCACAGCGAAAGCTGGGAATAGTGCAGCCACACTTAAAACGACTT
GGTACGAAAGATTCGTTGCCGTCCCCGGCCTTGGTGCTCTCCCGGCGCCG
CGACTTGGCCATTCGCAGCAGCTCAAGAGGTGAAGGAGCAGACTCCCCAT
CGAGGTGGCTGACCCGCGTACGAGGTGGGGTACAGCCGGCTAAGAGCAAA
AGTAAGGTCAAGGCTACTGCACCTACGGCCACTGGCAACAAAATCCGCTA
TGCAGGGGAGGCGGGGACCAAACAGAAGGTCAAGGAGTGGTACAAGGCCA
CGCCCATCATCACCCGCGTTCAACTCTCCACCTCCCTCCTCCTCACCGCC
TTGGGCCTGGTGGCGATCGACCCTTCATATTTTCTGCTGGATCCCGTGAA
AATCGTAACTGGCCTGCAGCTGTGGCGACCATTCACGGCCGCGGCTTTCA
TGGGTCCCCCATCTATGAGCTGGGTTTCCAACCTGTACTTTTTACACCAA
TACGGCACAGCGCTCGAGAATTCGGAAGGCGCCGCGCAGCAACTGGTGTT
TTTGTTGTTCAACATTGCTGTGCTGAGCTTTCTGGGTTCTCTGATTGGGC
TGCCAGTGACCAGCAACGCCCTGATAACGGCTGCTCTGCATTGCCTCGGC
CGCCAAGACCCTCTGCGAGACGTGAACTGGATGTTTGCCATCAAGATAAA
GTACTGGATGCTGCCCTTTTGCCTTGCCCTTGTCGACATGCTGCAAGCAC
AAAATCCCATGGCCGCCCTTCCTGCCGCGTTGGGCATTTTGAGCGGCCAT
TTGTACTACTTTTTGCGGAATGTGTGGCCTCAGATGGGTCACCGGGAGCT
ACTGTTGGCACCCGAATGGTGGTGCAAGCTTCTGAATCGTAACAACGATG
ACATCATCTTCCGGAGAGACAAGCGACCCCTTGTGGGAGCGGACGGTAGC
GCGGGAGGGACAGGTAGTGGTGGAAGTTTGACTTCCATTTTGCCCAAGAA
GAAGAAGAGCAAAATTTATAAGATGAAAAAGACATCGTCATGA
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protein sequence of NO20G01920.1

>NO20G01920.1-protein ID=NO20G01920.1-protein|Name=NO20G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MRQRGTEVSRRPWSILMLLLVMSGLQCLGVEAVQPPQRKLGIVQPHLKRL
GTKDSLPSPALVLSRRRDLAIRSSSRGEGADSPSRWLTRVRGGVQPAKSK
SKVKATAPTATGNKIRYAGEAGTKQKVKEWYKATPIITRVQLSTSLLLTA
LGLVAIDPSYFLLDPVKIVTGLQLWRPFTAAAFMGPPSMSWVSNLYFLHQ
YGTALENSEGAAQQLVFLLFNIAVLSFLGSLIGLPVTSNALITAALHCLG
RQDPLRDVNWMFAIKIKYWMLPFCLALVDMLQAQNPMAALPAALGILSGH
LYYFLRNVWPQMGHRELLLAPEWWCKLLNRNNDDIIFRRDKRPLVGADGS
AGGTGSGGSLTSILPKKKKSKIYKMKKTSS*
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mRNA from alignment at chr20:577684..579088-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01920.1 ID=NO20G01920.1|Name=NO20G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1405bp|location=Sequence derived from alignment at chr20:577684..579088- (Nannochloropsis oceanica)
ATGCGGCAGCGGGGCACTGAAGTCAGTCGGCGGCCATGGAGCATCCTGAT
GCTGCTGCTTGTGATGAGCGGCCTGCAATGCCTTGGCGTAGAGGCCGTCC
AGCCACCACAGCGAAAGCTGGGAATAGTGCAGCCACACTTAAAACGACTT
GGTACGAAAGATTCGTTGCCGTCCCCGGCCTTGGTGCTCTCCCGGCGCCG
CGACTTGGCCATTCGCAGCAGCTCAAGAGGTGAAGGAGCAGACTCCCCAT
CGAGGTGGCTGACCCGCGTACGAGGTGGGGTACAGCCGGCTAAGAGCAAA
AGTAAGGTCAAGGCTACTGCACCTACGGCCACTGGCAACAAAATCCGCTA
TGCAGGGGAGGCGGGGACCAAACAGAAGGTCAAGGAGTGGTACAAGGCCA
CGCCCATCATCACCCGCGTTCAACTCTCCACCTCCCTCCTCCTCACCGCC
TTGGGCCTGGTGGCGATCGACCCTTCATATTTTCTGCTGGATCCCGTGAA
AATCGTAACTGGCCTGCAGCTGTGGCGACCATTCACGGCCGCGGCTTTCA
TGGGTCCCCCATCTATGAGCTGGGTTTCCAACCTGTACTTTTTACACCAA
TACGGTATGTGCCGAGGGACCTCATATCGGGCGTGGATTCTCATTCCGAG
CTTACGTCATGGCAACAAACAACATACATACAGGCACAGCGCTCGAGAAT
TCGGAAGGCGCCGCGCAGCAACTGGTGTTTTTGTTGTTCAACATTGCTGT
GCTGAGCTTTCTGGGTTCTCTGATTGGGCTGCCAGTGACCAGCAACGCCC
TGATAACGGCTGCTCTGCATTGCCTCGGCCGCCAAGACCCTCTGCGAGAC
GTGAACTGGATGTTTGCCATCAAGGTATGTACTCTCATTGTGGAACGGAA
AAGCATAGAGTGCTCGTGAGTAAAGTGCCTCATGACGGCTTTAAATCATA
TTTTGACCGACACAGATAAAGTACTGGATGCTGCCCTTTTGCCTTGCCCT
TGTCGACATGCTGCAAGCACAAAATCCCATGGCCGCCCTTCCTGCCGCGT
TGGGCATTTTGAGCGGTAAGTTATTCATTCGCCTTGTCTCTCCCTTACCA
GCTTCACATCTCACATGTACATGTGTTTTTCCTCCCTCTTCCCCCCCCCC
CGCCAAGGCCATTTGTACTACTTTTTGCGGAATGTGTGGCCTCAGATGGG
TCACCGGGAGCTACTGTTGGCACCCGAATGGTGGTGCAAGCTTCTGAATC
GTAACAACGATGACATCATCTTCCGGAGAGACAAGCGACCCCTTGTGGGA
GCGGACGGTAGCGCGGGAGGGACAGGTAGTGGTGGAAGTTTGACTTCCAT
TTTGCCCAAGAAGAAGAAGAGCAAAATTTATAAGATGAAAAAGACATCGT
CATGA
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Coding sequence (CDS) from alignment at chr20:577684..579088-

>NO20G01920.1 ID=NO20G01920.1|Name=NO20G01920.1|organism=Nannochloropsis oceanica|type=CDS|length=1143bp|location=Sequence derived from alignment at chr20:577684..579088- (Nannochloropsis oceanica)
ATGCGGCAGCGGGGCACTGAAGTCAGTCGGCGGCCATGGAGCATCCTGAT
GCTGCTGCTTGTGATGAGCGGCCTGCAATGCCTTGGCGTAGAGGCCGTCC
AGCCACCACAGCGAAAGCTGGGAATAGTGCAGCCACACTTAAAACGACTT
GGTACGAAAGATTCGTTGCCGTCCCCGGCCTTGGTGCTCTCCCGGCGCCG
CGACTTGGCCATTCGCAGCAGCTCAAGAGGTGAAGGAGCAGACTCCCCAT
CGAGGTGGCTGACCCGCGTACGAGGTGGGGTACAGCCGGCTAAGAGCAAA
AGTAAGGTCAAGGCTACTGCACCTACGGCCACTGGCAACAAAATCCGCTA
TGCAGGGGAGGCGGGGACCAAACAGAAGGTCAAGGAGTGGTACAAGGCCA
CGCCCATCATCACCCGCGTTCAACTCTCCACCTCCCTCCTCCTCACCGCC
TTGGGCCTGGTGGCGATCGACCCTTCATATTTTCTGCTGGATCCCGTGAA
AATCGTAACTGGCCTGCAGCTGTGGCGACCATTCACGGCCGCGGCTTTCA
TGGGTCCCCCATCTATGAGCTGGGTTTCCAACCTGTACTTTTTACACCAA
TACGGCACAGCGCTCGAGAATTCGGAAGGCGCCGCGCAGCAACTGGTGTT
TTTGTTGTTCAACATTGCTGTGCTGAGCTTTCTGGGTTCTCTGATTGGGC
TGCCAGTGACCAGCAACGCCCTGATAACGGCTGCTCTGCATTGCCTCGGC
CGCCAAGACCCTCTGCGAGACGTGAACTGGATGTTTGCCATCAAGATAAA
GTACTGGATGCTGCCCTTTTGCCTTGCCCTTGTCGACATGCTGCAAGCAC
AAAATCCCATGGCCGCCCTTCCTGCCGCGTTGGGCATTTTGAGCGGCCAT
TTGTACTACTTTTTGCGGAATGTGTGGCCTCAGATGGGTCACCGGGAGCT
ACTGTTGGCACCCGAATGGTGGTGCAAGCTTCTGAATCGTAACAACGATG
ACATCATCTTCCGGAGAGACAAGCGACCCCTTGTGGGAGCGGACGGTAGC
GCGGGAGGGACAGGTAGTGGTGGAAGTTTGACTTCCATTTTGCCCAAGAA
GAAGAAGAGCAAAATTTATAAGATGAAAAAGACATCGTCATGA
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Synonyms
Publications