NO20G01770.1, NO20G01770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01770.1
Unique NameNO20G01770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3243
Alignment locationchr20:534307..537549 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:534307..537549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01770.1 vs.
Match: EWM22052.1 (plasma membrane intrinsic protein [Nannochloropsis gaditana])

HSP 1 Score: 485.3 bits (1248), Expect = 1.400e-133
Identity = 251/323 (77.71%), Postives = 274/323 (84.83%), Query Frame = 0 
Query:    1 MADTTHAAAPGFMAPVDLEMDPVASEAPHEANAPGFEAPPTSRKLQSLDDYKQYFMAEMSHPTFTQSVIAEWWATTLFLFFLILSCLPGANDGQEVFRIGIVAGLMITILVYAFYAVSGGNINPAVSLGLALSGRMTAPRAIFYIAAQIIGAITGTAMAKVVSPTAFNLGKGGMNALQVLNVGDDIVTITAGQAFFGEVMGSMLLVLAVLFCTDTARSIEHPHMVALIPVEIGFVVLLCHIALIPIDGCGINPARSIGSAAIYGSNLDLWIFVWAPVVGAIFAAVTYRFIFSPTEVFNDYFKPSNVVDRASKRLRTLSGQGSG 324
            +A T  +A PGFM PVD+E     ++   EAN PGF A   +  L +L+DYK+YF+ EM HPTF QSVIAEWWATTLFLFFLILSCLPGANDGQEVFRIGIVAGL I ILVYAFYAVSGGNINPAVSLGLALSGRMTAPRA FYIAAQI+GAITGTAMAK VSP AF+LGKGGMNALQ L+V  + + IT GQAFF EVMGSMLLVLAVLFCTDTARSIEHPHM ALIP+EIGFVVLL H+A+IPIDGCGINPARSIGSAAIYGS + LWIFVW PVVGA FAA+ YR IF+PTEVFN+YFKP NV+ RASK LRTLSGQ  G
Sbjct:    2 VAATRQSAPPGFMVPVDIEPSSPGAQR-FEANPPGFMATLPTHTLNTLNDYKEYFITEMKHPTFAQSVIAEWWATTLFLFFLILSCLPGANDGQEVFRIGIVAGLTIAILVYAFYAVSGGNINPAVSLGLALSGRMTAPRACFYIAAQIVGAITGTAMAKAVSPRAFDLGKGGMNALQTLDVDLESIAITEGQAFFAEVMGSMLLVLAVLFCTDTARSIEHPHMTALIPLEIGFVVLLAHVAMIPIDGCGINPARSIGSAAIYGSLVHLWIFVWGPVVGACFAALIYRLIFAPTEVFNEYFKPENVMARASKGLRTLSGQDRG 323
The following BLAST results are available for this feature:
BLAST of NO20G01770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22052.11.400e-13377.71plasma membrane intrinsic protein [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01770NO20G01770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01770.1NO20G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01770.1.cds1NO20G01770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01770.1 ID=NO20G01770.1|Name=NO20G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=3243bp
CGCCAAATAACCACCGATGTGACCACTTTGTCTTTTCGAGGTACCGAGAA
GCTGAGCCAGAAGCTGGAAAGGATATATATATACATAATGGTAGGTAGGG
TGCCCGTGTTTTGATGTCCCTACTATGGGTAGGTATGGTGCCCGTGTGGA
GCCAAGGTCTTCGAAATATTGGAGCTCCGAAGGCGAGGAGTTGCCGATGC
TGTCGGCCCGGGGCTTGAAAGAAGGCGGTTCTCCTTATCCATTGGCAAGG
ACATTTTGCCTTATTGGCTGTGTCGCTTATAATATATGCCTGATTGTTTG
GCTCTATGAGTCATACAGCGACTGGTCGCTCGTCTTGAGCCACGGCTTGT
TTTTGCCTTTTTTGCCACGACGCAGCGTGGAGGTACGGCATATGTGACCG
ACCAAATGCACATATCAGCTCCACCATGCCCGGCCTTGGGAGTCCTAGTT
GAGGCAGAGAGCAAGAAATGAACTAAGGGCATTTTTTACGAGTGTCAGGG
CTTGGCAAGTTTAAAGGCCTTGGATCAACCCGGCCTTGGCTTTACATGGC
TTTGTCGGTCTACAACTTTTACTTGTGACTTGCAATCCCTCCCGCCTCCT
CGCCCTTGCCCTTGCTTAAGTTGAAGATACGCCCCCTTTTAACTTGACCC
TTAACCATCAGGTTACTCCACGGCCGAGTAGCCGTGGAAAAAGTTCGGGG
CACACGCTTTCAACGCCGCCTTGGCCTATCTGCACGCCTCGTTCGTGACC
CCGCACACTCGACAAGAGACTTTTCCCTCATGTCGCTCGGACCCAAATTC
TGTATCATTGTATCTTGGCTCTACTAAGACAAACAGTACAATCTTAAAAC
TGATCCATGCACGACGTCTGGACTTACATCGACGATTTGTTAATTCTTTT
CGGGGTGCTGGCCACCCACGACACCCGCTTCTCCATACAAGCTCTGTGCA
AAGCTCACGGCCTACACCACCCTACACGTTATTGGCACTCCAGACGTCAT
AGCCCTCTGCCGTCCGCTTCAAATTCCTCTCCACACATTCATCCTTTGCC
TGCTTTACCAGCACGTCAAGTCTGCTCCCCGCCCGCCTCTTCCCTGTGTG
ATTGTTTCAGGATTGACGATTTGGTTGTACTGTTTTTGTAACAAGCTTGC
GCTCCTGGAGTAGCCCAGTAGCATCTGCTCCCCTTTCCATATCCATCCAC
ACCTTTTCACCTCCTGTCATATATATAGCACCGCTCGCAAGCAATATCCA
CTTTAATATGCATGCCCGCTTTTTGATTCGTTTTCGCCGTGTTGAACAGC
CATCTTGCCGTTTGCCTGGTATCAGTGCCTATCTTTGCGTCTCATGTTGT
CCTCATATGTGATAAGGTTCTGGCCAATAAGCTTGGCTTGAGCACCTGCT
CGAGTAGAGCTGAGCACTTGCCCCCCGAACGCACCTACCACTCACCCATT
CTCCCCCCCCCCATCAGTCGCGCACTTCGTACAGAGTTACTCAAACCACA
CTTTCTGAGTCTTCGACCATGGCTGACACCACTCACGCCGCCGCCCCTGG
TTTCATGGCCCCCGTCGACCTGGAAATGGACCCCGTTGCCTCCGAGGCCC
CGCATGAGGCAAACGCCCCAGGTTTCGAGGCCCCTCCCACCAGCCGCAAG
CTCCAGTCCCTGGACGACTACAAGCAGTACTTTATGGCAGAAATGAGCCA
CCCTACTTTCACACAATCGGTTATTGCCGAGTGGTGGGCGACGACACTCT
TCCTCTTCTTTTTGATCCTGAGCTGCTTGCCTGGGGCTAACGACGGGCAG
GAGGTCTTCCGCATTGGCATTGTGGCCGGTCTCATGATCACCATCCTGGT
GTACGCGTTCTATGCCGTCAGTGGCGGGAATATAAATCCTGCCGTCTCTC
TGGGCCTAGCCTTGTCGGGGCGCATGACGGCTCCTCGTGCTATTTTTTAC
ATCGCGGCGCAGATTATCGGTGCCATTACCGGGACGGCCATGGCCAAGGT
GGTTAGCCCAACGGCCTTCAATCTGGGCAAAGGTGGAATGAACGCGCTGC
AAGTGCTAAATGTCGGGGATGATATTGTGACGATCACTGCAGGGCAGGCG
TTTTTTGGTGAGGTGATGGGCAGCATGCTTCTGGTGTTGGCTGTCTTGTT
TTGCACGGACACGGCCCGTTCGATCGAGCACCCTCACATGGTGGCCTTAA
TCCCCGTAGAGATCGGCTTTGTCGTGCTCCTCTGCCACATCGCCCTCATT
CCCATTGACGGCTGTGGCATCAACCCCGCGCGTTCCATCGGCTCGGCCGC
CATTTATGGCTCCAACCTCGATCTCTGGATCTTCGTCTGGGCGCCCGTGG
TCGGGGCGATCTTCGCCGCCGTCACCTATCGTTTCATCTTTTCCCCTACA
GAGGTATTCAACGATTATTTCAAGCCCAGCAATGTCGTGGACCGAGCATC
CAAGCGCCTGCGTACCCTCTCGGGGCAGGGCAGTGGGATGGGCCAGTAAG
AAAGACGTGAATGAGACAGGGTAATGGAAGGAGGTGAGAGGTAGGGTGTC
ATTTTTTCTGGCTCTTTTTTGTTTCGTTACTCTCGGGTTGTTCATGTGTC
GTCTTAGTCGATCGTGAGGGATGAGAAGGCCTTGGGAAAGCATGAGGGAA
GAACGGGAAGCACTGAAAGGAAGGGAGAACTTGGAGCAACAAGGAGACAA
AGAAGTAGAGGGACAGAGGGAGTGAATGAGAAAAACAAAAAGGCAAACAC
ACACACATTTACACTCACACTGAGATAGAGAAATCTCTATAAAAAGATAT
GATTGTAGTGTGTGAACATAAAATATTGTTCAGTGTGCATGTGTGGGCAG
TGTCTGAGTAAGCAGACAGATGATTGTATGTGTGAATGAGGAAAATGCGA
ATGATCTTCATTTTGTCTATCTTTCTCTTTCTTTCCAAATTAGGGGTATG
GAGAAAATGAAAAGGAGCTCCAGCGACCGTCTCAGTCGATGTGTACAACT
GACAACAAAGTTAAGATGAGGAAAGAATAAGCTTGTGCTGCTGCTGCGAG
TAGGTCTTGGCTTGAAAATACATTGATGGTGACCCGAGTGCACAGGCAGC
AACAGCCAGCACTTTAAGATACACACAATGAATGGGTAAAATGACACCAT
CAACTGTGCCACCTTATCACCTACATATTAGTCATCAAGAAAACATTAAT
GGTGCTAAAAGAAGCAAAAAGGTGCGTTACGGATGGAATTCCA
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protein sequence of NO20G01770.1

>NO20G01770.1-protein ID=NO20G01770.1-protein|Name=NO20G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MADTTHAAAPGFMAPVDLEMDPVASEAPHEANAPGFEAPPTSRKLQSLDD
YKQYFMAEMSHPTFTQSVIAEWWATTLFLFFLILSCLPGANDGQEVFRIG
IVAGLMITILVYAFYAVSGGNINPAVSLGLALSGRMTAPRAIFYIAAQII
GAITGTAMAKVVSPTAFNLGKGGMNALQVLNVGDDIVTITAGQAFFGEVM
GSMLLVLAVLFCTDTARSIEHPHMVALIPVEIGFVVLLCHIALIPIDGCG
INPARSIGSAAIYGSNLDLWIFVWAPVVGAIFAAVTYRFIFSPTEVFNDY
FKPSNVVDRASKRLRTLSGQGSGMGQ*
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mRNA from alignment at chr20:534307..537549+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01770.1 ID=NO20G01770.1|Name=NO20G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=3243bp|location=Sequence derived from alignment at chr20:534307..537549+ (Nannochloropsis oceanica)
CGCCAAATAACCACCGATGTGACCACTTTGTCTTTTCGAGGTACCGAGAA
GCTGAGCCAGAAGCTGGAAAGGATATATATATACATAATGGTAGGTAGGG
TGCCCGTGTTTTGATGTCCCTACTATGGGTAGGTATGGTGCCCGTGTGGA
GCCAAGGTCTTCGAAATATTGGAGCTCCGAAGGCGAGGAGTTGCCGATGC
TGTCGGCCCGGGGCTTGAAAGAAGGCGGTTCTCCTTATCCATTGGCAAGG
ACATTTTGCCTTATTGGCTGTGTCGCTTATAATATATGCCTGATTGTTTG
GCTCTATGAGTCATACAGCGACTGGTCGCTCGTCTTGAGCCACGGCTTGT
TTTTGCCTTTTTTGCCACGACGCAGCGTGGAGGTACGGCATATGTGACCG
ACCAAATGCACATATCAGCTCCACCATGCCCGGCCTTGGGAGTCCTAGTT
GAGGCAGAGAGCAAGAAATGAACTAAGGGCATTTTTTACGAGTGTCAGGG
CTTGGCAAGTTTAAAGGCCTTGGATCAACCCGGCCTTGGCTTTACATGGC
TTTGTCGGTCTACAACTTTTACTTGTGACTTGCAATCCCTCCCGCCTCCT
CGCCCTTGCCCTTGCTTAAGTTGAAGATACGCCCCCTTTTAACTTGACCC
TTAACCATCAGGTTACTCCACGGCCGAGTAGCCGTGGAAAAAGTTCGGGG
CACACGCTTTCAACGCCGCCTTGGCCTATCTGCACGCCTCGTTCGTGACC
CCGCACACTCGACAAGAGACTTTTCCCTCATGTCGCTCGGACCCAAATTC
TGTATCATTGTATCTTGGCTCTACTAAGACAAACAGTACAATCTTAAAAC
TGATCCATGCACGACGTCTGGACTTACATCGACGATTTGTTAATTCTTTT
CGGGGTGCTGGCCACCCACGACACCCGCTTCTCCATACAAGCTCTGTGCA
AAGCTCACGGCCTACACCACCCTACACGTTATTGGCACTCCAGACGTCAT
AGCCCTCTGCCGTCCGCTTCAAATTCCTCTCCACACATTCATCCTTTGCC
TGCTTTACCAGCACGTCAAGTCTGCTCCCCGCCCGCCTCTTCCCTGTGTG
ATTGTTTCAGGATTGACGATTTGGTTGTACTGTTTTTGTAACAAGCTTGC
GCTCCTGGAGTAGCCCAGTAGCATCTGCTCCCCTTTCCATATCCATCCAC
ACCTTTTCACCTCCTGTCATATATATAGCACCGCTCGCAAGCAATATCCA
CTTTAATATGCATGCCCGCTTTTTGATTCGTTTTCGCCGTGTTGAACAGC
CATCTTGCCGTTTGCCTGGTATCAGTGCCTATCTTTGCGTCTCATGTTGT
CCTCATATGTGATAAGGTTCTGGCCAATAAGCTTGGCTTGAGCACCTGCT
CGAGTAGAGCTGAGCACTTGCCCCCCGAACGCACCTACCACTCACCCATT
CTCCCCCCCCCCATCAGTCGCGCACTTCGTACAGAGTTACTCAAACCACA
CTTTCTGAGTCTTCGACCATGGCTGACACCACTCACGCCGCCGCCCCTGG
TTTCATGGCCCCCGTCGACCTGGAAATGGACCCCGTTGCCTCCGAGGCCC
CGCATGAGGCAAACGCCCCAGGTTTCGAGGCCCCTCCCACCAGCCGCAAG
CTCCAGTCCCTGGACGACTACAAGCAGTACTTTATGGCAGAAATGAGCCA
CCCTACTTTCACACAATCGGTTATTGCCGAGTGGTGGGCGACGACACTCT
TCCTCTTCTTTTTGATCCTGAGCTGCTTGCCTGGGGCTAACGACGGGCAG
GAGGTCTTCCGCATTGGCATTGTGGCCGGTCTCATGATCACCATCCTGGT
GTACGCGTTCTATGCCGTCAGTGGCGGGAATATAAATCCTGCCGTCTCTC
TGGGCCTAGCCTTGTCGGGGCGCATGACGGCTCCTCGTGCTATTTTTTAC
ATCGCGGCGCAGATTATCGGTGCCATTACCGGGACGGCCATGGCCAAGGT
GGTTAGCCCAACGGCCTTCAATCTGGGCAAAGGTGGAATGAACGCGCTGC
AAGTGCTAAATGTCGGGGATGATATTGTGACGATCACTGCAGGGCAGGCG
TTTTTTGGTGAGGTGATGGGCAGCATGCTTCTGGTGTTGGCTGTCTTGTT
TTGCACGGACACGGCCCGTTCGATCGAGCACCCTCACATGGTGGCCTTAA
TCCCCGTAGAGATCGGCTTTGTCGTGCTCCTCTGCCACATCGCCCTCATT
CCCATTGACGGCTGTGGCATCAACCCCGCGCGTTCCATCGGCTCGGCCGC
CATTTATGGCTCCAACCTCGATCTCTGGATCTTCGTCTGGGCGCCCGTGG
TCGGGGCGATCTTCGCCGCCGTCACCTATCGTTTCATCTTTTCCCCTACA
GAGGTATTCAACGATTATTTCAAGCCCAGCAATGTCGTGGACCGAGCATC
CAAGCGCCTGCGTACCCTCTCGGGGCAGGGCAGTGGGATGGGCCAGTAAG
AAAGACGTGAATGAGACAGGGTAATGGAAGGAGGTGAGAGGTAGGGTGTC
ATTTTTTCTGGCTCTTTTTTGTTTCGTTACTCTCGGGTTGTTCATGTGTC
GTCTTAGTCGATCGTGAGGGATGAGAAGGCCTTGGGAAAGCATGAGGGAA
GAACGGGAAGCACTGAAAGGAAGGGAGAACTTGGAGCAACAAGGAGACAA
AGAAGTAGAGGGACAGAGGGAGTGAATGAGAAAAACAAAAAGGCAAACAC
ACACACATTTACACTCACACTGAGATAGAGAAATCTCTATAAAAAGATAT
GATTGTAGTGTGTGAACATAAAATATTGTTCAGTGTGCATGTGTGGGCAG
TGTCTGAGTAAGCAGACAGATGATTGTATGTGTGAATGAGGAAAATGCGA
ATGATCTTCATTTTGTCTATCTTTCTCTTTCTTTCCAAATTAGGGGTATG
GAGAAAATGAAAAGGAGCTCCAGCGACCGTCTCAGTCGATGTGTACAACT
GACAACAAAGTTAAGATGAGGAAAGAATAAGCTTGTGCTGCTGCTGCGAG
TAGGTCTTGGCTTGAAAATACATTGATGGTGACCCGAGTGCACAGGCAGC
AACAGCCAGCACTTTAAGATACACACAATGAATGGGTAAAATGACACCAT
CAACTGTGCCACCTTATCACCTACATATTAGTCATCAAGAAAACATTAAT
GGTGCTAAAAGAAGCAAAAAGGTGCGTTACGGATGGAATTCCA
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Coding sequence (CDS) from alignment at chr20:534307..537549+

>NO20G01770.1 ID=NO20G01770.1|Name=NO20G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr20:534307..537549+ (Nannochloropsis oceanica)
ATGGCTGACACCACTCACGCCGCCGCCCCTGGTTTCATGGCCCCCGTCGA
CCTGGAAATGGACCCCGTTGCCTCCGAGGCCCCGCATGAGGCAAACGCCC
CAGGTTTCGAGGCCCCTCCCACCAGCCGCAAGCTCCAGTCCCTGGACGAC
TACAAGCAGTACTTTATGGCAGAAATGAGCCACCCTACTTTCACACAATC
GGTTATTGCCGAGTGGTGGGCGACGACACTCTTCCTCTTCTTTTTGATCC
TGAGCTGCTTGCCTGGGGCTAACGACGGGCAGGAGGTCTTCCGCATTGGC
ATTGTGGCCGGTCTCATGATCACCATCCTGGTGTACGCGTTCTATGCCGT
CAGTGGCGGGAATATAAATCCTGCCGTCTCTCTGGGCCTAGCCTTGTCGG
GGCGCATGACGGCTCCTCGTGCTATTTTTTACATCGCGGCGCAGATTATC
GGTGCCATTACCGGGACGGCCATGGCCAAGGTGGTTAGCCCAACGGCCTT
CAATCTGGGCAAAGGTGGAATGAACGCGCTGCAAGTGCTAAATGTCGGGG
ATGATATTGTGACGATCACTGCAGGGCAGGCGTTTTTTGGTGAGGTGATG
GGCAGCATGCTTCTGGTGTTGGCTGTCTTGTTTTGCACGGACACGGCCCG
TTCGATCGAGCACCCTCACATGGTGGCCTTAATCCCCGTAGAGATCGGCT
TTGTCGTGCTCCTCTGCCACATCGCCCTCATTCCCATTGACGGCTGTGGC
ATCAACCCCGCGCGTTCCATCGGCTCGGCCGCCATTTATGGCTCCAACCT
CGATCTCTGGATCTTCGTCTGGGCGCCCGTGGTCGGGGCGATCTTCGCCG
CCGTCACCTATCGTTTCATCTTTTCCCCTACAGAGGTATTCAACGATTAT
TTCAAGCCCAGCAATGTCGTGGACCGAGCATCCAAGCGCCTGCGTACCCT
CTCGGGGCAGGGCAGTGGGATGGGCCAGTAA
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Synonyms
Publications