NO20G01550.1, NO20G01550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01550.1
Unique NameNO20G01550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1796
Alignment locationchr20:477744..479666 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:477744..479666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO20G01550.1 vs.
Match: EWM22078.1 (lipase family protein [Nannochloropsis gaditana])

HSP 1 Score: 399.4 bits (1025), Expect = 1.200e-107
Identity = 183/296 (61.82%), Postives = 223/296 (75.34%), Query Frame = 0 
Query:   56 QSHQYNETLAYQLVDLCGCTYCCIHGCNMCTAQPSLKVTSIHSRIHDGHGFVAFDESTDTTYLAFTGTDPLALQDWFDDLNFFPEPFPDCEGCWVDRGFYHTYLELRDQVLAILAAYHREYPTPVLHLTGHSLGGALAVFAALELIHTLGLRVSTLYTFGQPRIGNVPFQTFLQASLEASSCAHFRVTHSRDPVPHLPPSIPPTHSYGFRHEPQEVYYPCGTGRG----VDGW-SSRSIN--SSSSGDDDVCAFVVCDPEEGEDPRGSDQNDFPLNFVDHITYLGFPFTLNYLQCE 345
            + + YNET+A   VDLCGC YCCI GC+ C   P+L VT +HSR+ DGHGFV  D   +  Y+ FTGTDPLA+Q++FDDL+F P  FP CEGCWV RGFYHTYL LRDQVL  LA +  ++P+  LH+TGHSLGGA+AVFAALELIH+LGLRV TLYTFGQPR+GN  FQTFL  +L  SSCAHFR+T  RDP+ HLPP+  P+ S GF+HEPQEV+YPCG  RG    + G  S+++ N  +SS  D + C ++VCDP EGEDPRGSD+    LNFVDH+TYLGFPFT NY+ C+
Sbjct:   98 REYGYNETMARHFVDLCGCAYCCIRGCDTCWTYPALNVTEVHSRVLDGHGFVGLDAPQNVVYIVFTGTDPLAVQNYFDDLDFIPVEFPGCEGCWVHRGFYHTYLGLRDQVLDTLAVFSHDHPSAKLHITGHSLGGAMAVFAALELIHSLGLRVQTLYTFGQPRVGNAAFQTFLHEALSLSSCAHFRITQHRDPIVHLPPTFVPSRSMGFQHEPQEVFYPCGVLRGNITKMSGTESNKTFNPWNSSVSDPESCQYIVCDPVEGEDPRGSDRFRVDLNFVDHVTYLGFPFTANYMLCD 393
The following BLAST results are available for this feature:
BLAST of NO20G01550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22078.11.200e-10761.82lipase family protein [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01550NO20G01550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01550.1NO20G01550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01550.1.cds1NO20G01550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01550.1.cds2NO20G01550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01550.1 ID=NO20G01550.1|Name=NO20G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1796bp
ACCCCGGCGTGCTTAAAGAGCCCTTGCTTTATGCCAAGGAAGCAAGAGTG
AGCAAACCAAACGCCATCATCCCAAGCCTGCCTTCGGCTACCCAGCCTTT
TTCCAATAATGACTGTCCCGCCAAGGCAACCCGTCGCGGCAATTGAGGAC
CCTTAGACCTTGTCAGCGGCAAATATCAGCCCAGCGACCTCAACTCCTCC
AGCTCCGAGACTAAGACCACATCCGAGACGAACACCTGCCTCCTCGCGGT
GAAGCTTGAACAGTAGCAGCAGTAGTAGCAGTGGAAGCGGCAGCATTCCA
GCCAATGCCTTCACATCTGTGCCGCCTGGCAACATTCTCCTCTTTTCCAA
CCTCATCTATAACGCTGTCGAAGCGCATAAAATTTACGCTAGCCACTCTC
CACGTACCAGCCACAGATCTACATGCAGCCGCGCAATGCAGCACTATTTC
AAGTTTTGCTTCATTGGACCCATCGGATGATCGTAGCTCTTACCCTATGG
GCACAAAGAAATGCGGCCATTGGGCAATATAGGATCATCACTAGTAGAAG
CCCATTAGAGCCGCCAGCGCCGACGCCTGCTGGGCCTCAAAGCCACCAGT
ACAACGAAACCTTAGCGTACCAACTTGTTGATCTGTGCGGCTGCACCTAC
TGCTGCATTCACGGCTGCAACATGTGCACTGCCCAACCATCACTCAAAGT
GACGTCGATTCATTCCCGAATCCACGACGGGCACGGTTTCGTTGCCTTCG
ACGAATCTACCGACACTACATACCTGGCCTTTACGGGAACTGACCCTTTG
GCCTTGCAGGATTGGTTTGACGACCTGAATTTCTTCCCTGAACCCTTTCC
AGATTGTGAAGGCTGTTGGGTGGACCGCGGATTTTACCACACCTACCTGG
AGTTACGCGATCAAGTGCTTGCCATTCTTGCTGCGTACCATCGGGAGTAT
CCTACCCCGGTCCTGCACCTGACGGGCCATTCCCTAGGAGGAGCCTTGGC
AGTATTTGCGGCTTTGGAATTGATCCACACATTGGGACTGCGGGTCAGTA
CGCTCTACACTTTTGGACAGCCCCGTATTGGCAATGTTCCTTTTCAGACA
TTTCTTCAAGCTAGTCTAGAGGCATCGTCTTGTGCGCATTTTCGGGTGAC
ACACAGTCGGGACCCTGTTCCTCATTTGCCTCCATCGATCCCTCCGACGC
ATTCATATGGCTTCCGACATGAGCCACAGGAAGTGTATTACCCGTGTGGG
ACTGGCCGAGGGGTCGACGGATGGAGCAGCCGCAGCATCAATAGTAGCAG
CAGCGGCGATGACGATGTCTGTGCATTTGTCGTCTGTGATCCTGAGGAAG
GGGAAGACCCCCGCGGGAGCGATCAAAACGATTTTCCACTGAATTTTGTG
GATCATATTACGTATTTAGGATTTCCGTTTACACTGAACTATTTGCAGTG
CGAATTCTCTTCCGTGGATGAATCAAGAAGAAAGGAGCCCGAGCCGTTTC
TGAGAAGACACAAGGCGGTGGGAAGCGTGTAAAAGGTAGATTCGGTTGAT
AGAGGACGAAAGCTTGTGTTCGTGTGAAGATGGGGAATGGACCGAATATC
CAGAGAATGCTGAGAAAAGCACGAATGAGAATTCGAAATGGAAAACATGT
ATCTGATCGCAACATGAGGCTTCAGTGTATCGTATATGCAATTACAGGAT
GAAAGACATCTACATCTTCTCTCAGAGTAAGGCCTGCAGACAATAGAGCA
TTAAATAGAAGGCGAGACGACTCACTCAAAAACGCTGCTGTTGGCT
back to top

protein sequence of NO20G01550.1

>NO20G01550.1-protein ID=NO20G01550.1-protein|Name=NO20G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MQPRNAALFQVLLHWTHRMIVALTLWAQRNAAIGQYRIITSRSPLEPPAP
TPAGPQSHQYNETLAYQLVDLCGCTYCCIHGCNMCTAQPSLKVTSIHSRI
HDGHGFVAFDESTDTTYLAFTGTDPLALQDWFDDLNFFPEPFPDCEGCWV
DRGFYHTYLELRDQVLAILAAYHREYPTPVLHLTGHSLGGALAVFAALEL
IHTLGLRVSTLYTFGQPRIGNVPFQTFLQASLEASSCAHFRVTHSRDPVP
HLPPSIPPTHSYGFRHEPQEVYYPCGTGRGVDGWSSRSINSSSSGDDDVC
AFVVCDPEEGEDPRGSDQNDFPLNFVDHITYLGFPFTLNYLQCEFSSVDE
SRRKEPEPFLRRHKAVGSV*
back to top

mRNA from alignment at chr20:477744..479666+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01550.1 ID=NO20G01550.1|Name=NO20G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1923bp|location=Sequence derived from alignment at chr20:477744..479666+ (Nannochloropsis oceanica)
ACCCCGGCGTGCTTAAAGAGCCCTTGCTTTATGCCAAGGAAGCAAGAGTG
AGCAAACCAAACGCCATCATCCCAAGCCTGCCTTCGGCTACCCAGCCTTT
TTCCAATAATGACTGTCCCGCCAAGGCAACCCGTCGCGGCAATTGAGGAC
CCTTAGACCTTGTCAGCGGCAAATATCAGCCCAGCGACCTCAACTCCTCC
AGCTCCGAGACTAAGACCACATCCGAGACGAACACCTGCCTCCTCGCGGT
GAAGCTTGAACAGTAGCAGCAGTAGTAGCAGTGGAAGCGGCAGCATTCCA
GCCAATGCCTTCACATCTGTGCCGCCTGGCAACATTCTCCTCTTTTCCAA
CCTCATCTATAACGCTGTCGAAGCGCATAAAATTTACGCTAGCCACTCTC
CACGTACCAGCCACAGATCTACATGCAGCCGCGCAATGCAGCACTATTTC
AAGTTTTGCTTCATTGGACCCATCGGATGATCGTAGCTCTTACCCTATGG
GCACAAAGAAATGCGGCCATTGGGCAATATAGGATCATCACTAGTAGAAG
CCCATTAGAGCCGCCAGCGCCGACGCCTGCTGGGCCTCAAAGCCACCAGT
ACAACGAAACCTTAGCGTACCAACTTGTTGATCTGTGCGGTAGGTCATCC
TTTCTTACCTCCGTTATCATCTCCAAGTGTCCTCTTACGCGAATTTCGGC
GTGGAGGTATATCACATTTCTTATGTTCCACCTCGTGCTCCCCCTACCTC
ATTCCTCCGTGTACAGGCTGCACCTACTGCTGCATTCACGGCTGCAACAT
GTGCACTGCCCAACCATCACTCAAAGTGACGTCGATTCATTCCCGAATCC
ACGACGGGCACGGTTTCGTTGCCTTCGACGAATCTACCGACACTACATAC
CTGGCCTTTACGGGAACTGACCCTTTGGCCTTGCAGGATTGGTTTGACGA
CCTGAATTTCTTCCCTGAACCCTTTCCAGATTGTGAAGGCTGTTGGGTGG
ACCGCGGATTTTACCACACCTACCTGGAGTTACGCGATCAAGTGCTTGCC
ATTCTTGCTGCGTACCATCGGGAGTATCCTACCCCGGTCCTGCACCTGAC
GGGCCATTCCCTAGGAGGAGCCTTGGCAGTATTTGCGGCTTTGGAATTGA
TCCACACATTGGGACTGCGGGTCAGTACGCTCTACACTTTTGGACAGCCC
CGTATTGGCAATGTTCCTTTTCAGACATTTCTTCAAGCTAGTCTAGAGGC
ATCGTCTTGTGCGCATTTTCGGGTGACACACAGTCGGGACCCTGTTCCTC
ATTTGCCTCCATCGATCCCTCCGACGCATTCATATGGCTTCCGACATGAG
CCACAGGAAGTGTATTACCCGTGTGGGACTGGCCGAGGGGTCGACGGATG
GAGCAGCCGCAGCATCAATAGTAGCAGCAGCGGCGATGACGATGTCTGTG
CATTTGTCGTCTGTGATCCTGAGGAAGGGGAAGACCCCCGCGGGAGCGAT
CAAAACGATTTTCCACTGAATTTTGTGGATCATATTACGTATTTAGGATT
TCCGTTTACACTGAACTATTTGCAGTGCGAATTCTCTTCCGTGGATGAAT
CAAGAAGAAAGGAGCCCGAGCCGTTTCTGAGAAGACACAAGGCGGTGGGA
AGCGTGTAAAAGGTAGATTCGGTTGATAGAGGACGAAAGCTTGTGTTCGT
GTGAAGATGGGGAATGGACCGAATATCCAGAGAATGCTGAGAAAAGCACG
AATGAGAATTCGAAATGGAAAACATGTATCTGATCGCAACATGAGGCTTC
AGTGTATCGTATATGCAATTACAGGATGAAAGACATCTACATCTTCTCTC
AGAGTAAGGCCTGCAGACAATAGAGCATTAAATAGAAGGCGAGACGACTC
ACTCAAAAACGCTGCTGTTGGCT
back to top

Coding sequence (CDS) from alignment at chr20:477744..479666+

>NO20G01550.1 ID=NO20G01550.1|Name=NO20G01550.1|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr20:477744..479666+ (Nannochloropsis oceanica)
ATGCAGCCGCGCAATGCAGCACTATTTCAAGTTTTGCTTCATTGGACCCA
TCGGATGATCGTAGCTCTTACCCTATGGGCACAAAGAAATGCGGCCATTG
GGCAATATAGGATCATCACTAGTAGAAGCCCATTAGAGCCGCCAGCGCCG
ACGCCTGCTGGGCCTCAAAGCCACCAGTACAACGAAACCTTAGCGTACCA
ACTTGTTGATCTGTGCGGCTGCACCTACTGCTGCATTCACGGCTGCAACA
TGTGCACTGCCCAACCATCACTCAAAGTGACGTCGATTCATTCCCGAATC
CACGACGGGCACGGTTTCGTTGCCTTCGACGAATCTACCGACACTACATA
CCTGGCCTTTACGGGAACTGACCCTTTGGCCTTGCAGGATTGGTTTGACG
ACCTGAATTTCTTCCCTGAACCCTTTCCAGATTGTGAAGGCTGTTGGGTG
GACCGCGGATTTTACCACACCTACCTGGAGTTACGCGATCAAGTGCTTGC
CATTCTTGCTGCGTACCATCGGGAGTATCCTACCCCGGTCCTGCACCTGA
CGGGCCATTCCCTAGGAGGAGCCTTGGCAGTATTTGCGGCTTTGGAATTG
ATCCACACATTGGGACTGCGGGTCAGTACGCTCTACACTTTTGGACAGCC
CCGTATTGGCAATGTTCCTTTTCAGACATTTCTTCAAGCTAGTCTAGAGG
CATCGTCTTGTGCGCATTTTCGGGTGACACACAGTCGGGACCCTGTTCCT
CATTTGCCTCCATCGATCCCTCCGACGCATTCATATGGCTTCCGACATGA
GCCACAGGAAGTGTATTACCCGTGTGGGACTGGCCGAGGGGTCGACGGAT
GGAGCAGCCGCAGCATCAATAGTAGCAGCAGCGGCGATGACGATGTCTGT
GCATTTGTCGTCTGTGATCCTGAGGAAGGGGAAGACCCCCGCGGGAGCGA
TCAAAACGATTTTCCACTGAATTTTGTGGATCATATTACGTATTTAGGAT
TTCCGTTTACACTGAACTATTTGCAGTGCGAATTCTCTTCCGTGGATGAA
TCAAGAAGAAAGGAGCCCGAGCCGTTTCTGAGAAGACACAAGGCGGTGGG
AAGCGTGTAA
back to top
Synonyms
Publications