NO20G00990.1, NO20G00990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00990.1
Unique NameNO20G00990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2137
Alignment locationchr20:317267..319869 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:317267..319869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G00990.1 vs.
Match: EWM22111.1 (horma domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 412.1 bits (1058), Expect = 3.100e-111
Identity = 345/708 (48.73%), Postives = 412/708 (58.19%), Query Frame = 0 
Query:    1 MASTTLHRTVITTSAVSTSVTAVQSLALTKNLMRVGLSQIAYARSLFPEHCFTDKSYIDMK-------SDAGGIRNEEAHLLTNWLEQGVFDALTKRYLRAVVFAISVPV-------GGIEEEDGREEGPEKVVETYQWKVGYTEEGEVVLNASRIAKTKAELKGQAISLIRALLMFTQTLESLPSHRTLSLKLLYYDDRTPISYEPPFFQAAARGDCLSVEEEGCLKVKIGSVTSPQYALELKFVGVDPSVVLGRREEGEEEEKG----GLLVMQREDEEDEKEEE-----EETDEEREGGVPPETPETEG--------GREKEEEEE-------DDDVTMADEEDEEETEPRGRKGGAGEGKKENKKKTYS--RGGAWGG-----GEGVAAAMTSLSLQDKTTRKEGRGQGAAATAAAVVAVGTKKAVGPLPIPVQKSVLHPPSAIAAGAAGAAAAGAAATASLMSASSFLPMRGKIVVGSVAYADLEAVRAHIVSF-YRPGSMISIHRVAAALGMSKEGVEAAFVRLAEEEGREGGREG--GWPFLENRSWGSGSRFVVRLNKEEEGKKGRKEGKGTVAAGGGGLEGGSNGEGGGRRED------RTPMEMQRD-----DDDDETRDGYGENEEEVAEPREGGTGSFPYSQ---PHPSYRPPVAAQQHAPLRPLVLVGDEPF--LLLPIPPPPPPPPPPLHFVLP 645
            MAST LHRT  TT+  STSVTAVQSLALTKNLMRVGLSQIAYARSLFPEHCF +KSYIDMK       S+ G +R+EEAHLLTNWLEQGVFDAL+KRYLRAVVFAIS+P            +E G E   EKV+ETYQWKVGYT++GEV LNASR+A+TKA+LK QAISLIRALLMFT TLESLP HRTLSLKLLYYD+RTP +YEPPFFQ AARGDCL+VE++G LKVKIG+V SPQYALELKFVGVD SVV  R EE  E E G    G+L+M+RE EE+E E+E     EE D+E+     P +  +          GRE+EE  E        D+ T+AD+E+EE  +P G++    + +KE  K+T    R    G      G GV  AM SLSLQDK  R                   + +  G L    Q      P    AG        +  T SL     F     KI+VGSV YA+LEAVR H++S  +R GS IS+++ A AL +S+E +EAA   LAEE  RE G+ G      +E R WG+G+RF+ R     E  KG   G   + AGG G+     G    ++E+      RTPM M +       D DET  G    EE+ AE         PYS    PH   R    AQQHAP +        PF       PP   P  P     LP
Sbjct:    1 MASTILHRT--TTAQTSTSVTAVQSLALTKNLMRVGLSQIAYARSLFPEHCFIEKSYIDMKIKHLQPKSENGNVRHEEAHLLTNWLEQGVFDALSKRYLRAVVFAISIPTPPTSLSCSAAIDERGAENAHEKVIETYQWKVGYTDDGEVTLNASRVARTKADLKAQAISLIRALLMFTHTLESLPCHRTLSLKLLYYDERTPPAYEPPFFQRAARGDCLAVEDKGALKVKIGNVVSPQYALELKFVGVDLSVV-NRAEEAVEAEDGTESAGILLMRREGEENEIEDEDSNKDEEDDDEKTALSTPISGVSGARKRRNDVRGREREEVSEGDSSRDPSDEETVADQEEEENKKPVGKQM---DMEKEANKRTLGGIRTKMDGPRRREKGRGVTGAMNSLSLQDKVER----------------TTRSTRRTGLLESNAQAKT--EPDGECAGTI----VDSPTTMSL-----FTQKHQKIIVGSVGYAELEAVREHVLSTDHRHGSWISVNKAATALSLSREQIEAALACLAEEGTRENGKGGRKQTAMVEGRVWGTGTRFLFR-----EVAKG---GHNKLVAGGEGVR--QEGHDVAQKEEDTIKCHRTPMSMDKSGPEEASDSDETCAGDCGPEEDNAE--------LPYSHPPVPHDGLR--TTAQQHAPPK-----APRPFRPSASAFPPSTSPSRPSSTSFLP 650
The following BLAST results are available for this feature:
BLAST of NO20G00990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22111.13.100e-11148.73horma domain-containing protein [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00990NO20G00990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00990.1NO20G00990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00990.1.cds1NO20G00990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00990.1.cds2NO20G00990.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00990.1.cds3NO20G00990.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00990.1.cds4NO20G00990.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00990.1 ID=NO20G00990.1|Name=NO20G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2137bp
ATGGCGTCCACCACCCTCCACCGCACGGTCATCACTACAAGCGCTGTTAG
CACCAGCGTCACAGCCGTGCAGAGTCTGGCCCTTACGAAGAACCTGATGC
GTGTCGGCCTCAGCCAGATCGCCTACGCCCGCAGCCTTTTTCCTGAGCAC
TGTTTCACTGACAAGTCATACATAGACATGAAGTCCGATGCCGGTGGAAT
CCGGAATGAGGAGGCCCACCTCTTGACAAATTGGCTGGAGCAAGGAGTTT
TCGACGCCCTTACCAAGCGCTATCTCCGTGCTGTCGTCTTTGCCATCTCG
GTCCCCGTGGGCGGGATTGAGGAGGAAGACGGGAGAGAGGAAGGGCCCGA
GAAGGTGGTTGAGACATATCAGTGGAAAGTGGGTTATACGGAGGAGGGGG
AGGTGGTTTTAAACGCCTCTCGCATTGCCAAGACCAAGGCCGAGTTGAAA
GGGCAGGCCATCAGCCTCATTCGCGCCCTGCTCATGTTCACACAAACGTT
GGAGTCCCTCCCCTCCCACCGGACGCTATCCCTGAAGCTCCTCTACTACG
ACGACCGTACCCCCATCTCGTACGAACCGCCCTTTTTCCAGGCCGCGGCC
CGTGGCGACTGTCTCTCGGTGGAGGAGGAGGGGTGTCTGAAGGTAAAGAT
AGGGAGTGTGACATCGCCGCAGTATGCACTGGAGTTGAAGTTTGTCGGCG
TGGACCCGAGTGTTGTCTTGGGGAGGAGGGAGGAGGGGGAGGAGGAGGAG
AAGGGGGGGCTGTTGGTGATGCAGCGGGAGGACGAGGAGGATGAGAAGGA
GGAGGAGGAGGAGACTGATGAAGAGAGGGAGGGAGGGGTGCCTCCAGAGA
CACCGGAAACGGAGGGAGGGAGGGAGAAGGAGGAGGAGGAGGAGGATGAC
GATGTAACGATGGCTGATGAGGAGGATGAGGAGGAAACAGAGCCAAGGGG
GAGGAAAGGAGGGGCAGGGGAAGGTAAAAAGGAAAATAAGAAGAAGACGT
ACAGTCGTGGTGGGGCGTGGGGGGGAGGAGAAGGAGTAGCCGCGGCGATG
ACATCCCTCTCTCTACAGGACAAAACTACCCGGAAAGAAGGGAGGGGTCA
AGGTGCTGCCGCCACTGCCGCAGCGGTAGTCGCAGTAGGCACGAAAAAAG
CTGTGGGCCCTTTGCCTATCCCTGTACAGAAAAGTGTGCTTCATCCTCCT
TCTGCTATAGCTGCTGGTGCTGCTGGTGCTGCTGCTGCTGGTGCTGCTGC
TACTGCCTCGTTGATGTCCGCCTCCTCCTTCCTCCCCATGCGCGGCAAGA
TCGTGGTTGGTTCCGTGGCCTACGCAGACCTGGAGGCGGTGCGCGCTCAC
ATAGTCTCTTTCTATCGTCCGGGTAGCATGATTTCTATTCACAGAGTAGC
GGCTGCCCTCGGAATGTCAAAGGAAGGGGTTGAAGCGGCGTTTGTGCGCT
TGGCGGAGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGGCCCTTT
TTGGAGAATAGAAGCTGGGGGTCGGGCAGTAGGTTTGTGGTGAGATTGAA
TAAGGAGGAGGAAGGGAAGAAAGGAAGGAAGGAAGGGAAAGGTACGGTGG
CTGCGGGAGGAGGAGGACTGGAAGGAGGGAGCAATGGTGAAGGGGGAGGA
AGAAGGGAGGATCGCACTCCCATGGAGATGCAGCGTGATGACGACGATGA
CGAGACTCGGGATGGATATGGGGAGAATGAGGAGGAGGTGGCAGAGCCGA
GGGAGGGAGGGACGGGATCGTTCCCCTATTCGCAGCCCCATCCAAGCTAC
AGGCCCCCGGTGGCTGCACAACAGCACGCCCCCCTAAGGCCCCTCGTCCT
GGTCGGGGACGAGCCCTTCCTCCTCCTTCCCATCCCTCCGCCGCCGCCTC
CTCCTCCTCCTCCTCTTCATTTCGTCCTTCCCTCTTGACAAACCCTCGCC
GAGGGGCCACGAGGTTGGCGAGTGAATATCTGTTGGAGTCGGGGGAGGAC
GGCTTTGAGATTAGTTTGACGCAGGAGGAGTCGTCAGCACGGTGTAAAGC
CAGCGTGGTGTCACGGCCGATCGTGCAGCGAGCAAAGCGGACGCGGCGTT
GAGGGGGAGAGAGGGAGAAGGGGGGGGGGTGAATGAG
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protein sequence of NO20G00990.1

>NO20G00990.1-protein ID=NO20G00990.1-protein|Name=NO20G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=646bp
MASTTLHRTVITTSAVSTSVTAVQSLALTKNLMRVGLSQIAYARSLFPEH
CFTDKSYIDMKSDAGGIRNEEAHLLTNWLEQGVFDALTKRYLRAVVFAIS
VPVGGIEEEDGREEGPEKVVETYQWKVGYTEEGEVVLNASRIAKTKAELK
GQAISLIRALLMFTQTLESLPSHRTLSLKLLYYDDRTPISYEPPFFQAAA
RGDCLSVEEEGCLKVKIGSVTSPQYALELKFVGVDPSVVLGRREEGEEEE
KGGLLVMQREDEEDEKEEEEETDEEREGGVPPETPETEGGREKEEEEEDD
DVTMADEEDEEETEPRGRKGGAGEGKKENKKKTYSRGGAWGGGEGVAAAM
TSLSLQDKTTRKEGRGQGAAATAAAVVAVGTKKAVGPLPIPVQKSVLHPP
SAIAAGAAGAAAAGAAATASLMSASSFLPMRGKIVVGSVAYADLEAVRAH
IVSFYRPGSMISIHRVAAALGMSKEGVEAAFVRLAEEEGREGGREGGWPF
LENRSWGSGSRFVVRLNKEEEGKKGRKEGKGTVAAGGGGLEGGSNGEGGG
RREDRTPMEMQRDDDDDETRDGYGENEEEVAEPREGGTGSFPYSQPHPSY
RPPVAAQQHAPLRPLVLVGDEPFLLLPIPPPPPPPPPPLHFVLPS*
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mRNA from alignment at chr20:317267..319869+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00990.1 ID=NO20G00990.1|Name=NO20G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2603bp|location=Sequence derived from alignment at chr20:317267..319869+ (Nannochloropsis oceanica)
ATGGCGTCCACCACCCTCCACCGCACGGTCATCACTACAAGCGCTGTTAG
CACCAGCGTCACAGCCGTGCAGGTACGTTCTGTATGTGTGACACCTTGTT
ATGCCGCCCTCCTTCCCTCCCTCCTCATCCTTTTTCCTCCTCCCACCATG
ACCATCTAGAGTCTGGCCCTTACGAAGAACCTGATGCGTGTCGGCCTCAG
CCAGATCGCCTACGCCCGCAGCCTTTTTCCTGAGCACTGTTTCACTGACA
AGTCATACATAGACATGAAGGTAAACAGTTTTTCACCCTTTCCCTTCCTG
TCTGCCTCAGTCCCTCTACTGGTTCCCTCGCTCCCTCCACCTATCCTTAC
AGATCCATCACTCTTCCTCCCTCCTTCCTCCCTCCCTCCCTCCCTTTCTA
CTCATTAGATCAAACACCTCCAACCTAAGTCCGATGCCGGTGGAATCCGG
AATGAGGAGGCCCACCTCTTGACAAATTGGCTGGAGCAAGGAGTTTTCGA
CGCCCTTACCAAGCGCTATCTCCGTGCTGTCGTCTTTGCCATCTCGGTCC
CCGTGGGCGGGATTGAGGAGGAAGACGGGAGAGAGGAAGGGCCCGAGAAG
GTGGTTGAGACATATCAGTGGAAAGTGGGTTATACGGAGGAGGGGGAGGT
GGTTTTAAACGCCTCTCGCATTGCCAAGACCAAGGCCGAGTTGAAAGGGC
AGGCCATCAGGTAGGAAGGGAGGGAATGCGGGAAGGGGGGGGGGGGGGGC
GATATGGACACGCAAAGAATCGTGTTGAAGGTCTCTCTCCCTAGCAAGAA
GGTGGCCGAGCTGTAAGTCACGCTCTGAGGTACATTTACCTACCTACCTC
CCCTCCCCTCCCTCCCTCCCTCTCTCTCTCCTCTTTCCCCCTTCCCACAC
ACTCTCCCTTCCCCCTTTCCTCCCTCACAGCCTCATTCGCGCCCTGCTCA
TGTTCACACAAACGTTGGAGTCCCTCCCCTCCCACCGGACGCTATCCCTG
AAGCTCCTCTACTACGACGACCGTACCCCCATCTCGTACGAACCGCCCTT
TTTCCAGGCCGCGGCCCGTGGCGACTGTCTCTCGGTGGAGGAGGAGGGGT
GTCTGAAGGTAAAGATAGGGAGTGTGACATCGCCGCAGTATGCACTGGAG
TTGAAGTTTGTCGGCGTGGACCCGAGTGTTGTCTTGGGGAGGAGGGAGGA
GGGGGAGGAGGAGGAGAAGGGGGGGCTGTTGGTGATGCAGCGGGAGGACG
AGGAGGATGAGAAGGAGGAGGAGGAGGAGACTGATGAAGAGAGGGAGGGA
GGGGTGCCTCCAGAGACACCGGAAACGGAGGGAGGGAGGGAGAAGGAGGA
GGAGGAGGAGGATGACGATGTAACGATGGCTGATGAGGAGGATGAGGAGG
AAACAGAGCCAAGGGGGAGGAAAGGAGGGGCAGGGGAAGGTAAAAAGGAA
AATAAGAAGAAGACGTACAGTCGTGGTGGGGCGTGGGGGGGAGGAGAAGG
AGTAGCCGCGGCGATGACATCCCTCTCTCTACAGGACAAAACTACCCGGA
AAGAAGGGAGGGGTCAAGGTGCTGCCGCCACTGCCGCAGCGGTAGTCGCA
GTAGGCACGAAAAAAGCTGTGGGCCCTTTGCCTATCCCTGTACAGAAAAG
TGTGCTTCATCCTCCTTCTGCTATAGCTGCTGGTGCTGCTGGTGCTGCTG
CTGCTGGTGCTGCTGCTACTGCCTCGTTGATGTCCGCCTCCTCCTTCCTC
CCCATGCGCGGCAAGATCGTGGTTGGTTCCGTGGCCTACGCAGACCTGGA
GGCGGTGCGCGCTCACATAGTCTCTTTCTATCGTCCGGGTAGCATGATTT
CTATTCACAGAGTAGCGGCTGCCCTCGGAATGTCAAAGGAAGGGGTTGAA
GCGGCGTTTGTGCGCTTGGCGGAGGAGGAAGGGAGGGAGGGAGGGAGGGA
GGGAGGGTGGCCCTTTTTGGAGAATAGAAGCTGGGGGTCGGGCAGTAGGT
TTGTGGTGAGATTGAATAAGGAGGAGGAAGGGAAGAAAGGAAGGAAGGAA
GGGAAAGGTACGGTGGCTGCGGGAGGAGGAGGACTGGAAGGAGGGAGCAA
TGGTGAAGGGGGAGGAAGAAGGGAGGATCGCACTCCCATGGAGATGCAGC
GTGATGACGACGATGACGAGACTCGGGATGGATATGGGGAGAATGAGGAG
GAGGTGGCAGAGCCGAGGGAGGGAGGGACGGGATCGTTCCCCTATTCGCA
GCCCCATCCAAGCTACAGGCCCCCGGTGGCTGCACAACAGCACGCCCCCC
TAAGGCCCCTCGTCCTGGTCGGGGACGAGCCCTTCCTCCTCCTTCCCATC
CCTCCGCCGCCGCCTCCTCCTCCTCCTCCTCTTCATTTCGTCCTTCCCTC
TTGACAAACCCTCGCCGAGGGGCCACGAGGTTGGCGAGTGAATATCTGTT
GGAGTCGGGGGAGGACGGCTTTGAGATTAGTTTGACGCAGGAGGAGTCGT
CAGCACGGTGTAAAGCCAGCGTGGTGTCACGGCCGATCGTGCAGCGAGCA
AAGCGGACGCGGCGTTGAGGGGGAGAGAGGGAGAAGGGGGGGGGGTGAAT
GAG
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Coding sequence (CDS) from alignment at chr20:317267..319869+

>NO20G00990.1 ID=NO20G00990.1|Name=NO20G00990.1|organism=Nannochloropsis oceanica|type=CDS|length=1938bp|location=Sequence derived from alignment at chr20:317267..319869+ (Nannochloropsis oceanica)
ATGGCGTCCACCACCCTCCACCGCACGGTCATCACTACAAGCGCTGTTAG
CACCAGCGTCACAGCCGTGCAGAGTCTGGCCCTTACGAAGAACCTGATGC
GTGTCGGCCTCAGCCAGATCGCCTACGCCCGCAGCCTTTTTCCTGAGCAC
TGTTTCACTGACAAGTCATACATAGACATGAAGTCCGATGCCGGTGGAAT
CCGGAATGAGGAGGCCCACCTCTTGACAAATTGGCTGGAGCAAGGAGTTT
TCGACGCCCTTACCAAGCGCTATCTCCGTGCTGTCGTCTTTGCCATCTCG
GTCCCCGTGGGCGGGATTGAGGAGGAAGACGGGAGAGAGGAAGGGCCCGA
GAAGGTGGTTGAGACATATCAGTGGAAAGTGGGTTATACGGAGGAGGGGG
AGGTGGTTTTAAACGCCTCTCGCATTGCCAAGACCAAGGCCGAGTTGAAA
GGGCAGGCCATCAGCCTCATTCGCGCCCTGCTCATGTTCACACAAACGTT
GGAGTCCCTCCCCTCCCACCGGACGCTATCCCTGAAGCTCCTCTACTACG
ACGACCGTACCCCCATCTCGTACGAACCGCCCTTTTTCCAGGCCGCGGCC
CGTGGCGACTGTCTCTCGGTGGAGGAGGAGGGGTGTCTGAAGGTAAAGAT
AGGGAGTGTGACATCGCCGCAGTATGCACTGGAGTTGAAGTTTGTCGGCG
TGGACCCGAGTGTTGTCTTGGGGAGGAGGGAGGAGGGGGAGGAGGAGGAG
AAGGGGGGGCTGTTGGTGATGCAGCGGGAGGACGAGGAGGATGAGAAGGA
GGAGGAGGAGGAGACTGATGAAGAGAGGGAGGGAGGGGTGCCTCCAGAGA
CACCGGAAACGGAGGGAGGGAGGGAGAAGGAGGAGGAGGAGGAGGATGAC
GATGTAACGATGGCTGATGAGGAGGATGAGGAGGAAACAGAGCCAAGGGG
GAGGAAAGGAGGGGCAGGGGAAGGTAAAAAGGAAAATAAGAAGAAGACGT
ACAGTCGTGGTGGGGCGTGGGGGGGAGGAGAAGGAGTAGCCGCGGCGATG
ACATCCCTCTCTCTACAGGACAAAACTACCCGGAAAGAAGGGAGGGGTCA
AGGTGCTGCCGCCACTGCCGCAGCGGTAGTCGCAGTAGGCACGAAAAAAG
CTGTGGGCCCTTTGCCTATCCCTGTACAGAAAAGTGTGCTTCATCCTCCT
TCTGCTATAGCTGCTGGTGCTGCTGGTGCTGCTGCTGCTGGTGCTGCTGC
TACTGCCTCGTTGATGTCCGCCTCCTCCTTCCTCCCCATGCGCGGCAAGA
TCGTGGTTGGTTCCGTGGCCTACGCAGACCTGGAGGCGGTGCGCGCTCAC
ATAGTCTCTTTCTATCGTCCGGGTAGCATGATTTCTATTCACAGAGTAGC
GGCTGCCCTCGGAATGTCAAAGGAAGGGGTTGAAGCGGCGTTTGTGCGCT
TGGCGGAGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGGCCCTTT
TTGGAGAATAGAAGCTGGGGGTCGGGCAGTAGGTTTGTGGTGAGATTGAA
TAAGGAGGAGGAAGGGAAGAAAGGAAGGAAGGAAGGGAAAGGTACGGTGG
CTGCGGGAGGAGGAGGACTGGAAGGAGGGAGCAATGGTGAAGGGGGAGGA
AGAAGGGAGGATCGCACTCCCATGGAGATGCAGCGTGATGACGACGATGA
CGAGACTCGGGATGGATATGGGGAGAATGAGGAGGAGGTGGCAGAGCCGA
GGGAGGGAGGGACGGGATCGTTCCCCTATTCGCAGCCCCATCCAAGCTAC
AGGCCCCCGGTGGCTGCACAACAGCACGCCCCCCTAAGGCCCCTCGTCCT
GGTCGGGGACGAGCCCTTCCTCCTCCTTCCCATCCCTCCGCCGCCGCCTC
CTCCTCCTCCTCCTCTTCATTTCGTCCTTCCCTCTTGA
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Synonyms
Publications