NO20G00800.1, NO20G00800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00800.1
Unique NameNO20G00800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1185
Alignment locationchr20:273019..274203 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:273019..274203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G00800.1 vs.
Match: EWM22149.1 (membrane-associated 30 kda protein [Nannochloropsis gaditana])

HSP 1 Score: 432.2 bits (1110), Expect = 1.800e-117
Identity = 244/311 (78.46%), Postives = 275/311 (88.42%), Query Frame = 0 
Query:   84 RSTPLLLALAMLSLACCCCVVHAFMPHSTSTLFAPSSMSKLPTATTTRSSRTRTHAVQMNLADRFFRVVKANINSVIQNLEDPEKILEQAVEDMQRDLIKIRQSYAEVSATQKRMERQKEQADNLSNEWYKRAQLALSKGDEELAREALGRRQQQVEVATSLGEQMAVQGSAIDKLFMSMQQLEAKITEAKAKKDQMIARARTAKTSQKVNDMLSSVTGSTSMDAFDRMNEKVEMLESKAEIAGQLAGVSDSSLEGKFKLLGDGDALDEELKKMKGMLGQGEKKAAGFLPAGEAAAEVDLELEALRKDMGK 395
            ++T +L+ LA++ LA C   V AF P    T F P+  SK PTAT  R  RTRTHAVQMNLADRFFRVVKAN+NSV+QNLEDPEKILEQAVEDMQ+DLIKIRQSYAEVSATQKRMERQKEQA+NLS+EWYKRAQLALSKGDEELAREAL RRQQQVEV +SLGEQM +Q  AID+LF SMQQLEAKI+EAK+KKDQMIARARTAKTS+KVNDMLSSV+G++SMDAF+RM EKVEMLESKAE+AGQLAGVSDSSLEGKFKLLG+  A+D+EL KMKGM+GQGE+K+AGFLP G A AEVD ELEALRK+MG+
Sbjct:    5 KTTIVLVVLAVVGLAFCPTKVRAFRP----TSFLPALHSKFPTATP-RPLRTRTHAVQMNLADRFFRVVKANLNSVLQNLEDPEKILEQAVEDMQKDLIKIRQSYAEVSATQKRMERQKEQAENLSSEWYKRAQLALSKGDEELAREALSRRQQQVEVVSSLGEQMTIQAGAIDRLFNSMQQLEAKISEAKSKKDQMIARARTAKTSEKVNDMLSSVSGTSSMDAFERMKEKVEMLESKAEVAGQLAGVSDSSLEGKFKLLGESSAVDDELSKMKGMIGQGERKSAGFLPPGMAEAEVDSELEALRKEMGQ 310
The following BLAST results are available for this feature:
BLAST of NO20G00800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22149.11.800e-11778.46membrane-associated 30 kda protein [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00800NO20G00800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00800.1NO20G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00800.1.cds1NO20G00800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00800.1 ID=NO20G00800.1|Name=NO20G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp
ATGTGCCTTTGTAACGTCTGCCCTTGTCAGCATCAGGTACACATAAGTAC
GCGCTTGACCATAACTCTCTCATCGTCTTCTTTGGAGCTCATCATTGCCC
GCCGACCCCTCACCACAGAAAAACCAGGGCCGCCGCGACAACCCACTTTC
TTCCACAGCAGCGCCGCCGCAGCGTCAGACTTCTATTTCACCACGCCCAG
CAGCACCACACGACGTCACCGCCTCTGCACAACCATGTTCTCGTTTTCAA
GGAGTACGCCTCTTCTCCTGGCGCTGGCCATGCTAAGCCTGGCCTGCTGC
TGCTGCGTCGTTCATGCATTCATGCCTCATTCTACTTCGACACTCTTCGC
CCCCTCCTCCATGTCCAAGCTCCCTACGGCTACCACAACTCGCAGCAGCC
GCACGCGCACCCACGCCGTGCAGATGAATTTGGCCGATCGGTTTTTCCGT
GTTGTCAAGGCCAACATTAATTCAGTCATCCAAAATTTAGAGGACCCTGA
AAAGATCCTGGAGCAAGCAGTCGAAGACATGCAACGGGACTTGATCAAAA
TTAGGCAATCTTACGCCGAGGTGTCCGCGACGCAAAAGCGCATGGAACGC
CAGAAGGAACAAGCGGATAATCTGTCGAATGAATGGTACAAACGTGCACA
GCTTGCGCTGAGCAAAGGGGATGAGGAGCTGGCCCGCGAGGCGTTGGGAA
GGAGGCAGCAACAGGTGGAGGTTGCCACGTCGCTGGGTGAGCAAATGGCA
GTGCAAGGCTCGGCGATTGATAAATTGTTCATGTCCATGCAGCAGCTCGA
AGCAAAAATCACCGAGGCCAAGGCGAAGAAGGACCAGATGATTGCAAGGG
CTCGAACAGCCAAGACGAGTCAAAAAGTGAATGACATGCTGTCGTCAGTA
ACAGGCTCAACGAGCATGGACGCCTTTGACCGTATGAACGAAAAGGTTGA
GATGCTTGAAAGCAAAGCTGAGATCGCCGGTCAGCTTGCCGGTGTGTCTG
ACAGCTCTTTAGAAGGGAAGTTTAAGCTGTTGGGAGACGGGGATGCGTTG
GACGAGGAGTTGAAGAAAATGAAAGGTATGCTGGGACAGGGGGAGAAGAA
GGCGGCTGGCTTCTTACCCGCCGGGGAGGCAGCCGCAGAGGTGGATTTAG
AGTTGGAGGCGCTGAGAAAAGACATGGGGAAATAG
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protein sequence of NO20G00800.1

>NO20G00800.1-protein ID=NO20G00800.1-protein|Name=NO20G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MCLCNVCPCQHQVHISTRLTITLSSSSLELIIARRPLTTEKPGPPRQPTF
FHSSAAAASDFYFTTPSSTTRRHRLCTTMFSFSRSTPLLLALAMLSLACC
CCVVHAFMPHSTSTLFAPSSMSKLPTATTTRSSRTRTHAVQMNLADRFFR
VVKANINSVIQNLEDPEKILEQAVEDMQRDLIKIRQSYAEVSATQKRMER
QKEQADNLSNEWYKRAQLALSKGDEELAREALGRRQQQVEVATSLGEQMA
VQGSAIDKLFMSMQQLEAKITEAKAKKDQMIARARTAKTSQKVNDMLSSV
TGSTSMDAFDRMNEKVEMLESKAEIAGQLAGVSDSSLEGKFKLLGDGDAL
DEELKKMKGMLGQGEKKAAGFLPAGEAAAEVDLELEALRKDMGK*
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mRNA from alignment at chr20:273019..274203+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00800.1 ID=NO20G00800.1|Name=NO20G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp|location=Sequence derived from alignment at chr20:273019..274203+ (Nannochloropsis oceanica)
ATGTGCCTTTGTAACGTCTGCCCTTGTCAGCATCAGGTACACATAAGTAC
GCGCTTGACCATAACTCTCTCATCGTCTTCTTTGGAGCTCATCATTGCCC
GCCGACCCCTCACCACAGAAAAACCAGGGCCGCCGCGACAACCCACTTTC
TTCCACAGCAGCGCCGCCGCAGCGTCAGACTTCTATTTCACCACGCCCAG
CAGCACCACACGACGTCACCGCCTCTGCACAACCATGTTCTCGTTTTCAA
GGAGTACGCCTCTTCTCCTGGCGCTGGCCATGCTAAGCCTGGCCTGCTGC
TGCTGCGTCGTTCATGCATTCATGCCTCATTCTACTTCGACACTCTTCGC
CCCCTCCTCCATGTCCAAGCTCCCTACGGCTACCACAACTCGCAGCAGCC
GCACGCGCACCCACGCCGTGCAGATGAATTTGGCCGATCGGTTTTTCCGT
GTTGTCAAGGCCAACATTAATTCAGTCATCCAAAATTTAGAGGACCCTGA
AAAGATCCTGGAGCAAGCAGTCGAAGACATGCAACGGGACTTGATCAAAA
TTAGGCAATCTTACGCCGAGGTGTCCGCGACGCAAAAGCGCATGGAACGC
CAGAAGGAACAAGCGGATAATCTGTCGAATGAATGGTACAAACGTGCACA
GCTTGCGCTGAGCAAAGGGGATGAGGAGCTGGCCCGCGAGGCGTTGGGAA
GGAGGCAGCAACAGGTGGAGGTTGCCACGTCGCTGGGTGAGCAAATGGCA
GTGCAAGGCTCGGCGATTGATAAATTGTTCATGTCCATGCAGCAGCTCGA
AGCAAAAATCACCGAGGCCAAGGCGAAGAAGGACCAGATGATTGCAAGGG
CTCGAACAGCCAAGACGAGTCAAAAAGTGAATGACATGCTGTCGTCAGTA
ACAGGCTCAACGAGCATGGACGCCTTTGACCGTATGAACGAAAAGGTTGA
GATGCTTGAAAGCAAAGCTGAGATCGCCGGTCAGCTTGCCGGTGTGTCTG
ACAGCTCTTTAGAAGGGAAGTTTAAGCTGTTGGGAGACGGGGATGCGTTG
GACGAGGAGTTGAAGAAAATGAAAGGTATGCTGGGACAGGGGGAGAAGAA
GGCGGCTGGCTTCTTACCCGCCGGGGAGGCAGCCGCAGAGGTGGATTTAG
AGTTGGAGGCGCTGAGAAAAGACATGGGGAAATAG
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Coding sequence (CDS) from alignment at chr20:273019..274203+

>NO20G00800.1 ID=NO20G00800.1|Name=NO20G00800.1|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at chr20:273019..274203+ (Nannochloropsis oceanica)
ATGTGCCTTTGTAACGTCTGCCCTTGTCAGCATCAGGTACACATAAGTAC
GCGCTTGACCATAACTCTCTCATCGTCTTCTTTGGAGCTCATCATTGCCC
GCCGACCCCTCACCACAGAAAAACCAGGGCCGCCGCGACAACCCACTTTC
TTCCACAGCAGCGCCGCCGCAGCGTCAGACTTCTATTTCACCACGCCCAG
CAGCACCACACGACGTCACCGCCTCTGCACAACCATGTTCTCGTTTTCAA
GGAGTACGCCTCTTCTCCTGGCGCTGGCCATGCTAAGCCTGGCCTGCTGC
TGCTGCGTCGTTCATGCATTCATGCCTCATTCTACTTCGACACTCTTCGC
CCCCTCCTCCATGTCCAAGCTCCCTACGGCTACCACAACTCGCAGCAGCC
GCACGCGCACCCACGCCGTGCAGATGAATTTGGCCGATCGGTTTTTCCGT
GTTGTCAAGGCCAACATTAATTCAGTCATCCAAAATTTAGAGGACCCTGA
AAAGATCCTGGAGCAAGCAGTCGAAGACATGCAACGGGACTTGATCAAAA
TTAGGCAATCTTACGCCGAGGTGTCCGCGACGCAAAAGCGCATGGAACGC
CAGAAGGAACAAGCGGATAATCTGTCGAATGAATGGTACAAACGTGCACA
GCTTGCGCTGAGCAAAGGGGATGAGGAGCTGGCCCGCGAGGCGTTGGGAA
GGAGGCAGCAACAGGTGGAGGTTGCCACGTCGCTGGGTGAGCAAATGGCA
GTGCAAGGCTCGGCGATTGATAAATTGTTCATGTCCATGCAGCAGCTCGA
AGCAAAAATCACCGAGGCCAAGGCGAAGAAGGACCAGATGATTGCAAGGG
CTCGAACAGCCAAGACGAGTCAAAAAGTGAATGACATGCTGTCGTCAGTA
ACAGGCTCAACGAGCATGGACGCCTTTGACCGTATGAACGAAAAGGTTGA
GATGCTTGAAAGCAAAGCTGAGATCGCCGGTCAGCTTGCCGGTGTGTCTG
ACAGCTCTTTAGAAGGGAAGTTTAAGCTGTTGGGAGACGGGGATGCGTTG
GACGAGGAGTTGAAGAAAATGAAAGGTATGCTGGGACAGGGGGAGAAGAA
GGCGGCTGGCTTCTTACCCGCCGGGGAGGCAGCCGCAGAGGTGGATTTAG
AGTTGGAGGCGCTGAGAAAAGACATGGGGAAATAG
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Synonyms
Publications