NO20G00710.1, NO20G00710.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO20G00710.1
Unique Name	NO20G00710.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1290
Alignment location	chr20:241717..243370 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr20	genome	chr20:241717..243370 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO20G00710.1 vs.
Match: EWM22193.1 (mitochondrial carrier domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 590.9 bits (1522), Expect = 3.200e-165
Identity = 290/392 (73.98%), Postives = 328/392 (83.67%), Query Frame = 0

Query:   47 SGTNSSGYTAKGSPLL-PRE--------ACGIACDKEPWVLLEEVLRPRSGYPPPHQSQRAAILRRHSSLSRSAAPVAIPPTRTHAINAYLNQREKQEGKDPGFFKFDSEFQEELDTTVWGRTISGGVSGAIAMGINVAAFMWLRTIMSYQQAHGTPLAKTVGVLYRQGGVRRFYRGLIPALIHAPASRFGDTAGNAGMLAWLDRHAETQNLPIVFKTAAGSVASALWRIVIMPLDTIIICQQVQGDPGWSSLYRKLIRKGPSVLFQGAGASFSANVLGHFPWFAIYNLCESKLPEPSDMKSRLFRNAFIGFAASVASDILSNSLTVIKVCKQASVELLTYRQTTEQILATDGVKGLLGRGLGLRLMANGVQGMAFGVVWKYLDDCIFRGQC 430
            SG+N+    A  +PL  PR+         CG AC+KEPW LLEE LRP    PP ++S R A+LRRHSS+S +AAP+++PPTRTHAINAYL+Q+E++EGK   F + D+E QEELD TVWGR  SGGVSGAIAMGINV AFMWLRTIMSYQQ HGTPL + +  LYR+GGVRRFY+G   AL+H PASRFGDTA NAG LA LDRHAET+NLPIV KTAAGSVASA+WRI +MPLDT+I+CQQVQG PGWS L RKL R GPSVLFQGAGASFSANV+GHFPWFA+YNLCE+ LPEP  MK+R+ RNAF+GFAASVASD+LSNSLTVIKVCKQASVELLTYRQTTEQILA DGV+GLLGRGLGLRLMANG QGM FGVVWK+LDDCIFRGQC
Sbjct:    2 SGSNALWTGAPSAPLSSPRDHTTTAASTRCGRACNKEPWFLLEEALRPAGARPPANESHRNAVLRRHSSMSAAAAPLSLPPTRTHAINAYLHQKEQREGKRVDFLRVDTEMQEELDRTVWGRAFSGGVSGAIAMGINVGAFMWLRTIMSYQQMHGTPLPQVLRTLYREGGVRRFYQGFTAALVHGPASRFGDTAANAGALALLDRHAETRNLPIVLKTAAGSVASAVWRIFLMPLDTLIVCQQVQGYPGWSGLLRKLKRVGPSVLFQGAGASFSANVVGHFPWFAVYNLCETHLPEPGGMKTRVLRNAFMGFAASVASDVLSNSLTVIKVCKQASVELLTYRQTTEQILAVDGVRGLLGRGLGLRLMANGFQGMTFGVVWKFLDDCIFRGQC 393

The following BLAST results are available for this feature:

BLAST of NO20G00710.1 vs.

BLAST of NO20G00710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22193.1	3.200e-165	73.98	mitochondrial carrier domain-containing protein [N...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO20G00710	NO20G00710	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO20G00710.1	NO20G00710.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO20G00710.1.cds1	NO20G00710.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G00710.1.cds2	NO20G00710.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G00710.1.cds3	NO20G00710.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr20:241717..243370-
coding sequence from alignment at chr20:241717..243370-

mRNA sequence

>NO20G00710.1 ID=NO20G00710.1|Name=NO20G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1290bp
ATGCACTTACGACGCCAACTGCAACACAAACGAAATTATCCTGAAATTTC
GCAAAGAGACGACGTCAATAAAAAGCTTGTGATTGTCCTACTTGATTTAA
CAACGAGCATCACCCGCACTCGCATCACCAGCACTAGCAGCGGTACCAAC
AGCAGCGGGTATACAGCCAAGGGCTCGCCGCTGCTTCCTCGGGAGGCATG
CGGTATCGCGTGTGATAAGGAGCCATGGGTGCTGCTAGAGGAAGTACTTC
GACCCCGATCCGGGTACCCGCCGCCCCACCAGTCCCAACGCGCAGCGATA
CTGAGGCGTCACTCATCTCTCTCTCGTTCTGCCGCACCCGTCGCCATCCC
CCCTACCCGCACGCACGCCATTAATGCCTACCTAAATCAGAGAGAGAAGC
AGGAGGGGAAAGACCCCGGTTTCTTCAAGTTTGACTCAGAATTTCAAGAG
GAACTCGATACCACCGTATGGGGGCGGACGATTTCGGGGGGAGTGTCGGG
AGCAATCGCCATGGGCATCAATGTGGCTGCCTTTATGTGGCTCCGCACGA
TCATGTCCTATCAACAAGCACATGGCACACCTTTGGCCAAGACAGTTGGC
GTTCTTTACCGGCAGGGTGGCGTACGCCGATTCTATCGTGGTTTGATCCC
GGCCTTGATTCATGCCCCCGCCTCCCGCTTTGGAGATACGGCCGGCAACG
CCGGAATGCTGGCCTGGCTAGACCGGCATGCGGAGACCCAAAACTTGCCC
ATTGTCTTCAAGACGGCTGCAGGTTCTGTGGCTTCGGCATTGTGGCGCAT
CGTGATCATGCCTTTGGACACGATCATCATCTGCCAGCAAGTGCAAGGAG
ACCCCGGCTGGTCCTCCCTCTACCGCAAGCTGATTCGAAAGGGCCCGTCG
GTGCTTTTCCAAGGCGCTGGGGCATCCTTCTCTGCAAACGTATTGGGACA
TTTTCCTTGGTTTGCCATTTATAACCTTTGTGAGTCCAAGCTCCCGGAGC
CCTCCGATATGAAGTCCCGCCTGTTCCGGAATGCCTTTATCGGTTTCGCG
GCCAGTGTGGCCTCCGACATCCTCTCGAATTCCTTGACAGTCATCAAGGT
CTGCAAACAAGCAAGCGTGGAGCTCCTGACCTATCGGCAGACGACGGAAC
AGATCTTGGCTACGGATGGAGTGAAAGGATTGTTAGGTCGTGGATTAGGC
CTGCGTTTGATGGCGAATGGCGTCCAAGGTATGGCGTTCGGTGTTGTCTG
GAAGTACTTGGACGATTGCATCTTCCGTGGGCAATGTTAA

protein sequence of NO20G00710.1

>NO20G00710.1-protein ID=NO20G00710.1-protein|Name=NO20G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MHLRRQLQHKRNYPEISQRDDVNKKLVIVLLDLTTSITRTRITSTSSGTN
SSGYTAKGSPLLPREACGIACDKEPWVLLEEVLRPRSGYPPPHQSQRAAI
LRRHSSLSRSAAPVAIPPTRTHAINAYLNQREKQEGKDPGFFKFDSEFQE
ELDTTVWGRTISGGVSGAIAMGINVAAFMWLRTIMSYQQAHGTPLAKTVG
VLYRQGGVRRFYRGLIPALIHAPASRFGDTAGNAGMLAWLDRHAETQNLP
IVFKTAAGSVASALWRIVIMPLDTIIICQQVQGDPGWSSLYRKLIRKGPS
VLFQGAGASFSANVLGHFPWFAIYNLCESKLPEPSDMKSRLFRNAFIGFA
ASVASDILSNSLTVIKVCKQASVELLTYRQTTEQILATDGVKGLLGRGLG
LRLMANGVQGMAFGVVWKYLDDCIFRGQC*

mRNA from alignment at chr20:241717..243370-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO20G00710.1 ID=NO20G00710.1|Name=NO20G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1654bp|location=Sequence derived from alignment at chr20:241717..243370- (Nannochloropsis oceanica)
ATGCACTTACGACGCCAACTGCAACACAAACGAAGTACGTAAATAGATTT
GGAGGAAAAGGAAGGCTAGGGCCTGCGTGGTTGACACCACCTGAGGCAAT
AGGGCTTGATCTCATCTATCCAGCACTCTTCCTTTCCCTCCACATGCGTA
CGCAACAACCACAGATTATCCTGAAATTTCGCAAAGAGACGACGTCAATA
AAAAGCTTGTGATTGTCCTACTTGATTTAACAACGTCCCACGCGCCATCC
ATCACCATCTACCCTACCTAAATTACAACAAGTACAATCCTGGAGAATAT
CCGCCTGCATTCGTCCGCCTGGTCCTTTCCGTCCCACTCTTCCTCTTCTT
CTTCTTCCTCTTCTTCCTCCTCCTTCTCCTCCTCCTCTTCCTTGACTTGC
GGTGGCAGCCTCTGTCACAGAGGCGTGACAAGTGTGGTAGGGTGCGTGAC
CTATCCTGCCCTTTCCAGGAGCATCACCCGCACTCGCATCACCAGCACTA
GCAGCGGTACCAACAGCAGCGGGTATACAGCCAAGGGCTCGCCGCTGCTT
CCTCGGGAGGCATGCGGTATCGCGTGTGATAAGGAGCCATGGGTGCTGCT
AGAGGAAGTACTTCGACCCCGATCCGGGTACCCGCCGCCCCACCAGTCCC
AACGCGCAGCGATACTGAGGCGTCACTCATCTCTCTCTCGTTCTGCCGCA
CCCGTCGCCATCCCCCCTACCCGCACGCACGCCATTAATGCCTACCTAAA
TCAGAGAGAGAAGCAGGAGGGGAAAGACCCCGGTTTCTTCAAGTTTGACT
CAGAATTTCAAGAGGAACTCGATACCACCGTATGGGGGCGGACGATTTCG
GGGGGAGTGTCGGGAGCAATCGCCATGGGCATCAATGTGGCTGCCTTTAT
GTGGCTCCGCACGATCATGTCCTATCAACAAGCACATGGCACACCTTTGG
CCAAGACAGTTGGCGTTCTTTACCGGCAGGGTGGCGTACGCCGATTCTAT
CGTGGTTTGATCCCGGCCTTGATTCATGCCCCCGCCTCCCGCTTTGGAGA
TACGGCCGGCAACGCCGGAATGCTGGCCTGGCTAGACCGGCATGCGGAGA
CCCAAAACTTGCCCATTGTCTTCAAGACGGCTGCAGGTTCTGTGGCTTCG
GCATTGTGGCGCATCGTGATCATGCCTTTGGACACGATCATCATCTGCCA
GCAAGTGCAAGGAGACCCCGGCTGGTCCTCCCTCTACCGCAAGCTGATTC
GAAAGGGCCCGTCGGTGCTTTTCCAAGGCGCTGGGGCATCCTTCTCTGCA
AACGTATTGGGACATTTTCCTTGGTTTGCCATTTATAACCTTTGTGAGTC
CAAGCTCCCGGAGCCCTCCGATATGAAGTCCCGCCTGTTCCGGAATGCCT
TTATCGGTTTCGCGGCCAGTGTGGCCTCCGACATCCTCTCGAATTCCTTG
ACAGTCATCAAGGTCTGCAAACAAGCAAGCGTGGAGCTCCTGACCTATCG
GCAGACGACGGAACAGATCTTGGCTACGGATGGAGTGAAAGGATTGTTAG
GTCGTGGATTAGGCCTGCGTTTGATGGCGAATGGCGTCCAAGGTATGGCG
TTCGGTGTTGTCTGGAAGTACTTGGACGATTGCATCTTCCGTGGGCAATG
TTAA

Coding sequence (CDS) from alignment at chr20:241717..243370-

>NO20G00710.1 ID=NO20G00710.1|Name=NO20G00710.1|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr20:241717..243370- (Nannochloropsis oceanica)
ATGCACTTACGACGCCAACTGCAACACAAACGAAATTATCCTGAAATTTC
GCAAAGAGACGACGTCAATAAAAAGCTTGTGATTGTCCTACTTGATTTAA
CAACGAGCATCACCCGCACTCGCATCACCAGCACTAGCAGCGGTACCAAC
AGCAGCGGGTATACAGCCAAGGGCTCGCCGCTGCTTCCTCGGGAGGCATG
CGGTATCGCGTGTGATAAGGAGCCATGGGTGCTGCTAGAGGAAGTACTTC
GACCCCGATCCGGGTACCCGCCGCCCCACCAGTCCCAACGCGCAGCGATA
CTGAGGCGTCACTCATCTCTCTCTCGTTCTGCCGCACCCGTCGCCATCCC
CCCTACCCGCACGCACGCCATTAATGCCTACCTAAATCAGAGAGAGAAGC
AGGAGGGGAAAGACCCCGGTTTCTTCAAGTTTGACTCAGAATTTCAAGAG
GAACTCGATACCACCGTATGGGGGCGGACGATTTCGGGGGGAGTGTCGGG
AGCAATCGCCATGGGCATCAATGTGGCTGCCTTTATGTGGCTCCGCACGA
TCATGTCCTATCAACAAGCACATGGCACACCTTTGGCCAAGACAGTTGGC
GTTCTTTACCGGCAGGGTGGCGTACGCCGATTCTATCGTGGTTTGATCCC
GGCCTTGATTCATGCCCCCGCCTCCCGCTTTGGAGATACGGCCGGCAACG
CCGGAATGCTGGCCTGGCTAGACCGGCATGCGGAGACCCAAAACTTGCCC
ATTGTCTTCAAGACGGCTGCAGGTTCTGTGGCTTCGGCATTGTGGCGCAT
CGTGATCATGCCTTTGGACACGATCATCATCTGCCAGCAAGTGCAAGGAG
ACCCCGGCTGGTCCTCCCTCTACCGCAAGCTGATTCGAAAGGGCCCGTCG
GTGCTTTTCCAAGGCGCTGGGGCATCCTTCTCTGCAAACGTATTGGGACA
TTTTCCTTGGTTTGCCATTTATAACCTTTGTGAGTCCAAGCTCCCGGAGC
CCTCCGATATGAAGTCCCGCCTGTTCCGGAATGCCTTTATCGGTTTCGCG
GCCAGTGTGGCCTCCGACATCCTCTCGAATTCCTTGACAGTCATCAAGGT
CTGCAAACAAGCAAGCGTGGAGCTCCTGACCTATCGGCAGACGACGGAAC
AGATCTTGGCTACGGATGGAGTGAAAGGATTGTTAGGTCGTGGATTAGGC
CTGCGTTTGATGGCGAATGGCGTCCAAGGTATGGCGTTCGGTGTTGTCTG
GAAGTACTTGGACGATTGCATCTTCCGTGGGCAATGTTAA

Synonyms

Publications