NO19G02720.1, NO19G02720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02720.1
Unique NameNO19G02720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1299
Alignment locationchr19:827444..829511 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:827444..829511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02720.1 vs.
Match: EWM27369.1 (caax prenyl protease 2 [Nannochloropsis gaditana])

HSP 1 Score: 199.9 bits (507), Expect = 1.600e-47
Identity = 106/170 (62.35%), Postives = 126/170 (74.12%), Query Frame = 0 
Query:  233 MLPLLYQASSSPS---SLDSPRAIPFVKLIFLSPLFFGLAHAHHALQRVREGLPPAQALLEVALQVAYTSIFGWYAAFLFLRTGSLLPCILTHSFCNFVGLPNLAFMLSPSSLTPYPAFAFLLYVHRWKFLAAHLLGIALFVALLFPFSDPKLFTERRLEGERGVPLYWQ 400
            MLP+LYQA+SSPS   S  S  + P   LI L+PLFFGLAH HHALQR+R+G+P   A L V LQ+AYTSIFGW+AAFLFLRTGSLLPC+LTHSFCN +GLPNLAF+L P SL P P  +F+L+ HR K L  + LGI LF  LL+P SDP+ +   R EG R  PLYW+
Sbjct:    1 MLPILYQAASSPSLSHSRPSSSSPPLGPLILLTPLFFGLAHTHHALQRLRDGVPARIAFLGVCLQIAYTSIFGWHAAFLFLRTGSLLPCVLTHSFCNLMGLPNLAFLLPPPSLLPPPPSSFILHAHRGKILGVYALGIGLFAILLYPCSDPQWY--YREEGPR--PLYWR 166
The following BLAST results are available for this feature:
BLAST of NO19G02720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27369.11.600e-4762.35caax prenyl protease 2 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02720NO19G02720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02720.1NO19G02720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02720.1.cds1NO19G02720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02720.1.cds2NO19G02720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02720.1.cds3NO19G02720.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02720.1.cds4NO19G02720.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02720.1.cds5NO19G02720.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02720.1.cds6NO19G02720.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02720.1.cds7NO19G02720.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02720.1 ID=NO19G02720.1|Name=NO19G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp
ATGTCAAATGCGACAACAACAGAACTTCCCGAGGAAGGGAAGGGGAGGGA
GGGAGGAAGGAAGCGGGATGAAGGCCCATGTCGTGGTACCGGCACGCTGC
CAACCATCGTATTAAAAGGCCTGCCTTTCGATGAGGAGAGGAGCAGGCAA
GCATACTGGCGTTGGCTTTCCCCTTCGGTGCCTCTCATCGGACAAGGCCT
AGCTTACAGCGCCTTCGCGGCGGTTCTCTGGCCCTCCGTCCCTTTCACAG
TCCCCGAGGATCGGGTCGGGGTGGCGTACGGCCTCACCACCGCCATTCAA
AATGGAGGCCTGGCCCTCTTTCCTCTCTTGGCGGCGGCTATCTACAAGGC
CGCCGATTCTCGCTACCTTCCTCATGTGGAGCTTTTGTTTGTGTGCTTGG
CTATAGTGGGCGTCTTCTCCCTGTCCTGTCCTTTCCCCTTCCTCCTCTCA
TCCCTATCTGCTTACCTCCCTCCTGTTCGTCTCTCAGAGAGCTACTACGA
TCGTTGGTATGAGGTAGTGATGCACCTATCCTCTTCTCCCCTCCTCTTTC
GGCTGCGTCGTCGTCGTATCCCCCTGCCCTCGACCTGGTACGACTGGTGG
GAGAGAAGGAGAATCGCGCACAGGCTGACCAAGGAAACGCTATGGAGAAA
CCTGGTGGTGGCGCCACTGACGGAGGAAGTCGTATTCCGTGCCTGCATGC
TCCCTCTCCTTTACCAAGCTTCCTCCTCCCCTTCCTCCCTGGATTCCCCC
CGAGCTATCCCTTTCGTGAAACTGATCTTCTTGTCACCCCTTTTTTTTGG
TCTGGCGCACGCCCACCACGCCCTGCAGCGGGTGCGAGAAGGATTGCCGC
CCGCACAGGCCCTCCTCGAAGTAGCGTTGCAAGTTGCCTACACCAGCATC
TTCGGCTGGTATGCAGCGTTCCTTTTCCTCCGCACCGGCTCTCTCCTGCC
CTGCATCCTAACCCACTCCTTCTGCAACTTTGTGGGCCTCCCAAACCTGG
CCTTTATGCTTTCACCCTCCTCTCTTACGCCCTATCCTGCCTTCGCCTTC
CTCCTGTACGTGCATCGATGGAAGTTTCTCGCTGCTCACCTTCTAGGGAT
CGCCCTTTTTGTCGCACTTTTGTTCCCATTCTCGGATCCGAAGCTGTTCA
CCGAGAGAAGATTAGAGGGGGAAAGAGGTGTGCCATTATACTGGCAATTA
GAACGGCAAAAAAGGCATGCGAGGGCGAGGGGGTTGTGGATAAATTCGTC
CTTGAAAGGGAGCTCTGGAGGAATTAATCAAAGTAAAGAAATGAAATGA
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protein sequence of NO19G02720.1

>NO19G02720.1-protein ID=NO19G02720.1-protein|Name=NO19G02720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MSNATTTELPEEGKGREGGRKRDEGPCRGTGTLPTIVLKGLPFDEERSRQ
AYWRWLSPSVPLIGQGLAYSAFAAVLWPSVPFTVPEDRVGVAYGLTTAIQ
NGGLALFPLLAAAIYKAADSRYLPHVELLFVCLAIVGVFSLSCPFPFLLS
SLSAYLPPVRLSESYYDRWYEVVMHLSSSPLLFRLRRRRIPLPSTWYDWW
ERRRIAHRLTKETLWRNLVVAPLTEEVVFRACMLPLLYQASSSPSSLDSP
RAIPFVKLIFLSPLFFGLAHAHHALQRVREGLPPAQALLEVALQVAYTSI
FGWYAAFLFLRTGSLLPCILTHSFCNFVGLPNLAFMLSPSSLTPYPAFAF
LLYVHRWKFLAAHLLGIALFVALLFPFSDPKLFTERRLEGERGVPLYWQL
ERQKRHARARGLWINSSLKGSSGGINQSKEMK*
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mRNA from alignment at chr19:827444..829511+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02720.1 ID=NO19G02720.1|Name=NO19G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2068bp|location=Sequence derived from alignment at chr19:827444..829511+ (Nannochloropsis oceanica)
ATGTCAAATGCGACAACAACAGAACTTCCCGAGGAAGGGAAGGGGAGGGA
GGGAGGAAGGAAGCGGGATGAAGGCCCATGTCGTGGTACCGGCACGCTGC
CAACCATCGTATTAAAAGGCCTGCCTTTCGATGAGGAGAGGAGCAGGCAA
GGTACACATCTCACATACACATGTACCATATGTATCTTACCTACATGTAT
CGCACATTTCACTCATATACCCGGCATCTCACATGTACGTAGCATATCTC
ACACACACACTATATAAATGTCTTCCACACACATATTACATCTGGCACTC
GTACATAATAAAGCATACTGGCGTTGGCTTTCCCCTTCGGTGCCTCTCAT
CGGACAAGGCCTAGCTTACAGGTAAGCGACCTCTCTGCCGCTTTTCCCTT
TGATGCTCTACGTATTTCCAACACTCTTCTCTCTTCCCCTACTCCCCTCC
CTCAGCGCCTTCGCGGCGGTTCTCTGGCCCTCCGTCCCTTTCACAGTCCC
CGAGGATCGGGTCGGGGTGGCGTACGGCCTCACCACCGCCATTCAAAATG
GAGGCCTGGCCCTCTTTCCTCTCTTGGCGGCGGCTATCTACAAGGTAGGA
GGAATGGGGAAGGAGTAAGGGTGGGAATGCCGACGGGGATTAGGGATAAA
CGCACTGCTGTAATTTGCTAAATTTGCTTTCTCCCACTCTTTTCCCGCTT
TTTAACTTCCAATCCTCCCTCCCTTTTTCGCTCAGGCCGCCGATTCTCGC
TACCTTCCTCATGTGGAGCTTTTGTTTGTGTGCTTGGCTATAGTGGGCGT
CTTCTCCCTGTCCTGTCCTTTCCCCTTCCTCCTCTCATCCCTATCTGCTT
ACCTCCCTCCTGTTCGTCTCTCAGAGAGCTACTACGATCGTTGGTATGAG
GTAGTGATGCACCTATCCTCTTCTCCCCTCCTCTTTCGGCTGCGTCGTCG
TCGTATCCCCCTGCCCTCGACCTGGTACGACTGGTGGGAGAGAAGGAGAA
TCGCGCACAGGCTGACCAAGGAAACGCTATGGAGAAACCTGGTGGTGGCG
CCACTGACGGAGGTAGGGCATGGGAGGGTCAACACAAAGGGACAGAAATT
TGAGAACTTCATTCCATCCATCGCCCGGCCTCGACTTGAACCTATCTGCC
TTCTTTTTTCAAGGTCCCTTCTTCCCTCCCTCCTTCCGCTTACAGGAAGT
CGTATTCCGTGCCTGCATGCTCCCTCTCCTTTACCAAGCTTCCTCCTCCC
CTTCCTCCCTGGATTCCCCCCGAGCTATCCCTTTCGTGAAACTGATCTTC
TTGTCACCCCTTTTTTTTGGTCTGGCGCACGCCCACCACGCCCTGCAGCG
GGTGCGAGAAGGATTGCCGGTAGGGGACGAGGGAAGGCGGGATGAAGGAG
GCAAATCCTAAAAGAGAGAGCACCTATGAAGAGCTGAGGCAAAAGAGCGT
GAGGTTCATGAAATTCTGTTTTTCTCCCCTTCGCTCTCCTCGTTTGCCTC
ACAGCCCGCACAGGCCCTCCTCGAAGTAGCGTTGCAAGTTGCCTACACCA
GCATCTTCGGCTGGTATGCAGGTAAGGGCATGTTGGGGGCCGGAGGGATA
GAGAGAAAGTTAGGAAAGAGGACGCCTTCAACTTTTCCCCATTCTCGATT
ATATATTCAGTTACCTCTCTTTTTCCACTCTCCAGCGTTCCTTTTCCTCC
GCACCGGCTCTCTCCTGCCCTGCATCCTAACCCACTCCTTCTGCAACTTT
GTGGGCCTCCCAAACCTGGCCTTTATGCTTTCACCCTCCTCTCTTACGCC
CTATCCTGCCTTCGCCTTCCTCCTGTACGTGCATCGATGGAAGTTTCTCG
CTGCTCACCTTCTAGGGATCGCCCTTTTTGTCGCACTTTTGTTCCCATTC
TCGGATCCGAAGCTGTTCACCGAGAGAAGATTAGAGGGGGAAAGAGGTGT
GCCATTATACTGGCAATTAGAACGGCAAAAAAGGCATGCGAGGGCGAGGG
GGTTGTGGATAAATTCGTCCTTGAAAGGGAGCTCTGGAGGAATTAATCAA
AGTAAAGAAATGAAATGA
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Coding sequence (CDS) from alignment at chr19:827444..829511+

>NO19G02720.1 ID=NO19G02720.1|Name=NO19G02720.1|organism=Nannochloropsis oceanica|type=CDS|length=1299bp|location=Sequence derived from alignment at chr19:827444..829511+ (Nannochloropsis oceanica)
ATGTCAAATGCGACAACAACAGAACTTCCCGAGGAAGGGAAGGGGAGGGA
GGGAGGAAGGAAGCGGGATGAAGGCCCATGTCGTGGTACCGGCACGCTGC
CAACCATCGTATTAAAAGGCCTGCCTTTCGATGAGGAGAGGAGCAGGCAA
GCATACTGGCGTTGGCTTTCCCCTTCGGTGCCTCTCATCGGACAAGGCCT
AGCTTACAGCGCCTTCGCGGCGGTTCTCTGGCCCTCCGTCCCTTTCACAG
TCCCCGAGGATCGGGTCGGGGTGGCGTACGGCCTCACCACCGCCATTCAA
AATGGAGGCCTGGCCCTCTTTCCTCTCTTGGCGGCGGCTATCTACAAGGC
CGCCGATTCTCGCTACCTTCCTCATGTGGAGCTTTTGTTTGTGTGCTTGG
CTATAGTGGGCGTCTTCTCCCTGTCCTGTCCTTTCCCCTTCCTCCTCTCA
TCCCTATCTGCTTACCTCCCTCCTGTTCGTCTCTCAGAGAGCTACTACGA
TCGTTGGTATGAGGTAGTGATGCACCTATCCTCTTCTCCCCTCCTCTTTC
GGCTGCGTCGTCGTCGTATCCCCCTGCCCTCGACCTGGTACGACTGGTGG
GAGAGAAGGAGAATCGCGCACAGGCTGACCAAGGAAACGCTATGGAGAAA
CCTGGTGGTGGCGCCACTGACGGAGGAAGTCGTATTCCGTGCCTGCATGC
TCCCTCTCCTTTACCAAGCTTCCTCCTCCCCTTCCTCCCTGGATTCCCCC
CGAGCTATCCCTTTCGTGAAACTGATCTTCTTGTCACCCCTTTTTTTTGG
TCTGGCGCACGCCCACCACGCCCTGCAGCGGGTGCGAGAAGGATTGCCGC
CCGCACAGGCCCTCCTCGAAGTAGCGTTGCAAGTTGCCTACACCAGCATC
TTCGGCTGGTATGCAGCGTTCCTTTTCCTCCGCACCGGCTCTCTCCTGCC
CTGCATCCTAACCCACTCCTTCTGCAACTTTGTGGGCCTCCCAAACCTGG
CCTTTATGCTTTCACCCTCCTCTCTTACGCCCTATCCTGCCTTCGCCTTC
CTCCTGTACGTGCATCGATGGAAGTTTCTCGCTGCTCACCTTCTAGGGAT
CGCCCTTTTTGTCGCACTTTTGTTCCCATTCTCGGATCCGAAGCTGTTCA
CCGAGAGAAGATTAGAGGGGGAAAGAGGTGTGCCATTATACTGGCAATTA
GAACGGCAAAAAAGGCATGCGAGGGCGAGGGGGTTGTGGATAAATTCGTC
CTTGAAAGGGAGCTCTGGAGGAATTAATCAAAGTAAAGAAATGAAATGA
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Synonyms
Publications