NO19G02670.1, NO19G02670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02670.1
Unique NameNO19G02670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1580
Alignment locationchr19:802555..804288 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:802555..804288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO19G02670.1 vs.
Match: EWM26490.1 (cellulase 2 [Nannochloropsis gaditana])

HSP 1 Score: 277.7 bits (709), Expect = 6.000e-71
Identity = 158/416 (37.98%), Postives = 231/416 (55.53%), Query Frame = 0 
Query:   25 SDFASLATPITACLLLRGLSWTTEQGAILLNSRHHFHMKGLTWFGMDTADTRAPHGLWATTLDDVLDFLALNKFNVLRLPVAYTIACDLALRVPSSAISSDSSLHGLNVGKLLDSIFERAAARGILVVLALY--NDDATTLFGSQDQGLWYGSKASYQNFQNAWRRLLTRYGDRWNLLGVDLLDRPGRGRATWAENNPSTDWNLAAQDTAAILIQEYPQYHGLWFIQGIEGGEFAAQ--------YATDLRGALTQSLDLFTPASTKRVVYEVLLMGPS--VSPSMGYVYTTSFPDQMYAAYDDLFGGVEEATGRAVVVGKWGGSLDDAQQGDAMWQKAVADYFIDRCLDDTIYWALNPNAKDTGGVLSADWRTPNEAKLALLARIQPRPSVLLRNAEPEGGWSFMPGSSANPICN 429
            S  + ++TP   C+    L WT+E G ILLN +  FH+KG+++FG +T +   PHGLW+ T D +  FL    FN +RLP +  +A +   +V ++ I  +  LH L   +L+ +I ++AA  GIL++L ++  N+D           LWY  K S  + + AW  LLT +GDRWNL  +DL + P  G ATW     +TDWN AA++ A  L +++PQY GL F++G +               +  DL G     +DL + A  KR+VY   + GP   V P   Y    +FPD M   +   +  VEE T RAVVVG+WGG  ++    D +WQ + A + +D CL+DT YW LNPN+ DTGG+L  D+ TP   KLALLA++QP P+ +      +  +   PG+ ANP C+
Sbjct:   53 SGSSKVSTPADLCVA--SLDWTSEGGEILLNGQP-FHLKGVSYFGFETPN-EVPHGLWSVTRDQIFGFLRNESFNAVRLPFSTALALEPNKKVNANTIEKE--LHDLTALELIGNIIDKAAEYGILIMLDMHRLNEDFIP-------ELWYDDKYSMDDVKEAWDNLLTAFGDRWNLFAIDLKNEP-HGVATWGSGKATTDWNTAAEELATYLYKKHPQYKGLVFVEGTQLASAKHHKLDKNNKWWGGDLEGVQEFPIDLGSDALNKRLVYSPHVYGPDAFVQP---YFEAKNFPDNMPDIWKKQWAFVEEQTDRAVVVGEWGGRYENQ---DKIWQDSFAKFLVDECLEDTFYWCLNPNSGDTGGLLDYDFLTPMPKKLALLAKVQPHPTFITVKGSDQ--YCISPGAYANPKCD 446
The following BLAST results are available for this feature:
BLAST of NO19G02670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26490.16.000e-7137.98cellulase 2 [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02670NO19G02670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02670.1NO19G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02670.1.cds1NO19G02670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02670.1.cds2NO19G02670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02670.1 ID=NO19G02670.1|Name=NO19G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1580bp
ATGCTCCTCGCCCTGGTCGCCGCCCAGAGTCCGTCCCGGGCGCCGGCCCG
GAGTATGCTGCGCGGCGGCAAAAGCGATTTCGCCTCCCTCGCCACGCCCA
TCACCGCCTGTCTCCTTCTGCGTGGCTTATCGTGGACCACGGAACAAGGT
GCTATCCTACTTAACAGTCGTCATCACTTTCACATGAAGGGACTGACGTG
GTTTGGCATGGATACGGCCGACACGCGGGCTCCTCACGGTTTGTGGGCTA
CGACCCTTGACGACGTATTGGACTTCTTGGCCCTCAACAAGTTCAACGTG
CTTCGCCTTCCTGTTGCATATACCATAGCGTGTGATTTGGCCCTGCGCGT
TCCGAGCTCAGCTATATCCAGTGATTCCTCTTTGCACGGACTGAACGTGG
GAAAGCTACTCGACAGCATCTTTGAGCGGGCAGCAGCGCGGGGCATTTTA
GTGGTACTCGCCCTCTACAACGACGACGCTACCACACTCTTCGGCTCCCA
AGACCAGGGGCTGTGGTATGGCTCCAAAGCTTCATACCAAAATTTCCAAA
ACGCCTGGCGCCGGCTCTTGACTCGATATGGCGACCGTTGGAACCTGTTG
GGTGTGGACCTGCTCGACCGCCCAGGCCGGGGCCGCGCAACGTGGGCCGA
AAACAACCCCAGCACGGACTGGAACTTGGCAGCTCAAGACACGGCAGCCA
TCCTCATTCAGGAATACCCTCAGTACCATGGCTTATGGTTCATACAAGGT
ATTGAGGGCGGGGAATTTGCAGCCCAATATGCGACGGACCTGCGCGGTGC
CTTGACCCAGTCGCTGGACCTGTTTACCCCGGCGAGTACAAAGCGTGTGG
TATACGAAGTGCTGCTCATGGGGCCTTCCGTCTCCCCGTCGATGGGATAT
GTATATACCACATCTTTCCCCGATCAGATGTATGCGGCTTATGACGACCT
CTTTGGTGGCGTAGAGGAGGCGACTGGCCGAGCCGTGGTGGTTGGCAAGT
GGGGCGGTTCCCTCGATGATGCGCAGCAGGGTGATGCCATGTGGCAAAAG
GCCGTTGCCGATTACTTTATCGACCGGTGCTTAGACGACACTATCTACTG
GGCCCTTAATCCTAATGCCAAAGATACAGGCGGTGTGCTATCGGCCGATT
GGCGGACCCCTAACGAAGCCAAATTGGCGTTGCTGGCCCGGATACAACCC
CGCCCATCGGTCTTACTCCGCAACGCCGAGCCAGAGGGCGGGTGGTCTTT
TATGCCTGGCAGCTCGGCGAATCCCATCTGCAATTTGTAAATCAAGAGGT
AGAGGAAGGCAGGACAGGAACAGGCCTAGAGAGGGCAGAGATCGAAGAAG
GATGGTGAGCAAGAAAGGGAAGGAGCAGGTAACGATAGCATGAAAAGTAG
TAAAGGTTAGGAAAGTGAGAAGAATAAGATGGCTTTAATTGGTAGAAGGG
AAAGACGATCCAAGAAAAAAGAAATATGATCAAAAACAAATCGTCAGCGC
ATGCAAGCACAACAAGCGAAAAAGAGATGGAAACAAAAAGTACCATTAAA
CAATCCTACCTTGTGGCTCATTAAACCGCC
back to top

protein sequence of NO19G02670.1

>NO19G02670.1-protein ID=NO19G02670.1-protein|Name=NO19G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MLLALVAAQSPSRAPARSMLRGGKSDFASLATPITACLLLRGLSWTTEQG
AILLNSRHHFHMKGLTWFGMDTADTRAPHGLWATTLDDVLDFLALNKFNV
LRLPVAYTIACDLALRVPSSAISSDSSLHGLNVGKLLDSIFERAAARGIL
VVLALYNDDATTLFGSQDQGLWYGSKASYQNFQNAWRRLLTRYGDRWNLL
GVDLLDRPGRGRATWAENNPSTDWNLAAQDTAAILIQEYPQYHGLWFIQG
IEGGEFAAQYATDLRGALTQSLDLFTPASTKRVVYEVLLMGPSVSPSMGY
VYTTSFPDQMYAAYDDLFGGVEEATGRAVVVGKWGGSLDDAQQGDAMWQK
AVADYFIDRCLDDTIYWALNPNAKDTGGVLSADWRTPNEAKLALLARIQP
RPSVLLRNAEPEGGWSFMPGSSANPICNL*
back to top

mRNA from alignment at chr19:802555..804288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02670.1 ID=NO19G02670.1|Name=NO19G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1734bp|location=Sequence derived from alignment at chr19:802555..804288- (Nannochloropsis oceanica)
ATGCTCCTCGCCCTGGTCGCCGCCCAGAGTCCGTCCCGGGCGCCGGCCCG
GAGTATGCTGCGCGGCGGCAAAAGCGATTTCGCCTCCCTCGCCACGCCCA
TCACCGCCTGTCTCCTTCTGCGTGGCTTATCGTGGACCACGGAACAAGGT
GCTATCCTACTTAACAGTCGTCATCACTTTCACATGAAGGGACTGACGTG
GTGAGTAAAAGTATGCGACCTTCGATTTTCTTGGCCAGAGGCCGGGCACG
CCTCTTACCCCTTGGGGGCTTTGTCCTCTAAGAGAAGGACATAAATTCTG
ACTCTCTCTCCTCTCTGTTTCTCCTTTTCTTGCCTTTTCTTTTTCTTCTC
CAAGGTTTGGCATGGATACGGCCGACACGCGGGCTCCTCACGGTTTGTGG
GCTACGACCCTTGACGACGTATTGGACTTCTTGGCCCTCAACAAGTTCAA
CGTGCTTCGCCTTCCTGTTGCATATACCATAGCGTGTGATTTGGCCCTGC
GCGTTCCGAGCTCAGCTATATCCAGTGATTCCTCTTTGCACGGACTGAAC
GTGGGAAAGCTACTCGACAGCATCTTTGAGCGGGCAGCAGCGCGGGGCAT
TTTAGTGGTACTCGCCCTCTACAACGACGACGCTACCACACTCTTCGGCT
CCCAAGACCAGGGGCTGTGGTATGGCTCCAAAGCTTCATACCAAAATTTC
CAAAACGCCTGGCGCCGGCTCTTGACTCGATATGGCGACCGTTGGAACCT
GTTGGGTGTGGACCTGCTCGACCGCCCAGGCCGGGGCCGCGCAACGTGGG
CCGAAAACAACCCCAGCACGGACTGGAACTTGGCAGCTCAAGACACGGCA
GCCATCCTCATTCAGGAATACCCTCAGTACCATGGCTTATGGTTCATACA
AGGTATTGAGGGCGGGGAATTTGCAGCCCAATATGCGACGGACCTGCGCG
GTGCCTTGACCCAGTCGCTGGACCTGTTTACCCCGGCGAGTACAAAGCGT
GTGGTATACGAAGTGCTGCTCATGGGGCCTTCCGTCTCCCCGTCGATGGG
ATATGTATATACCACATCTTTCCCCGATCAGATGTATGCGGCTTATGACG
ACCTCTTTGGTGGCGTAGAGGAGGCGACTGGCCGAGCCGTGGTGGTTGGC
AAGTGGGGCGGTTCCCTCGATGATGCGCAGCAGGGTGATGCCATGTGGCA
AAAGGCCGTTGCCGATTACTTTATCGACCGGTGCTTAGACGACACTATCT
ACTGGGCCCTTAATCCTAATGCCAAAGATACAGGCGGTGTGCTATCGGCC
GATTGGCGGACCCCTAACGAAGCCAAATTGGCGTTGCTGGCCCGGATACA
ACCCCGCCCATCGGTCTTACTCCGCAACGCCGAGCCAGAGGGCGGGTGGT
CTTTTATGCCTGGCAGCTCGGCGAATCCCATCTGCAATTTGTAAATCAAG
AGGTAGAGGAAGGCAGGACAGGAACAGGCCTAGAGAGGGCAGAGATCGAA
GAAGGATGGTGAGCAAGAAAGGGAAGGAGCAGGTAACGATAGCATGAAAA
GTAGTAAAGGTTAGGAAAGTGAGAAGAATAAGATGGCTTTAATTGGTAGA
AGGGAAAGACGATCCAAGAAAAAAGAAATATGATCAAAAACAAATCGTCA
GCGCATGCAAGCACAACAAGCGAAAAAGAGATGGAAACAAAAAGTACCAT
TAAACAATCCTACCTTGTGGCTCATTAAACCGCC
back to top

Coding sequence (CDS) from alignment at chr19:802555..804288-

>NO19G02670.1 ID=NO19G02670.1|Name=NO19G02670.1|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr19:802555..804288- (Nannochloropsis oceanica)
ATGCTCCTCGCCCTGGTCGCCGCCCAGAGTCCGTCCCGGGCGCCGGCCCG
GAGTATGCTGCGCGGCGGCAAAAGCGATTTCGCCTCCCTCGCCACGCCCA
TCACCGCCTGTCTCCTTCTGCGTGGCTTATCGTGGACCACGGAACAAGGT
GCTATCCTACTTAACAGTCGTCATCACTTTCACATGAAGGGACTGACGTG
GTTTGGCATGGATACGGCCGACACGCGGGCTCCTCACGGTTTGTGGGCTA
CGACCCTTGACGACGTATTGGACTTCTTGGCCCTCAACAAGTTCAACGTG
CTTCGCCTTCCTGTTGCATATACCATAGCGTGTGATTTGGCCCTGCGCGT
TCCGAGCTCAGCTATATCCAGTGATTCCTCTTTGCACGGACTGAACGTGG
GAAAGCTACTCGACAGCATCTTTGAGCGGGCAGCAGCGCGGGGCATTTTA
GTGGTACTCGCCCTCTACAACGACGACGCTACCACACTCTTCGGCTCCCA
AGACCAGGGGCTGTGGTATGGCTCCAAAGCTTCATACCAAAATTTCCAAA
ACGCCTGGCGCCGGCTCTTGACTCGATATGGCGACCGTTGGAACCTGTTG
GGTGTGGACCTGCTCGACCGCCCAGGCCGGGGCCGCGCAACGTGGGCCGA
AAACAACCCCAGCACGGACTGGAACTTGGCAGCTCAAGACACGGCAGCCA
TCCTCATTCAGGAATACCCTCAGTACCATGGCTTATGGTTCATACAAGGT
ATTGAGGGCGGGGAATTTGCAGCCCAATATGCGACGGACCTGCGCGGTGC
CTTGACCCAGTCGCTGGACCTGTTTACCCCGGCGAGTACAAAGCGTGTGG
TATACGAAGTGCTGCTCATGGGGCCTTCCGTCTCCCCGTCGATGGGATAT
GTATATACCACATCTTTCCCCGATCAGATGTATGCGGCTTATGACGACCT
CTTTGGTGGCGTAGAGGAGGCGACTGGCCGAGCCGTGGTGGTTGGCAAGT
GGGGCGGTTCCCTCGATGATGCGCAGCAGGGTGATGCCATGTGGCAAAAG
GCCGTTGCCGATTACTTTATCGACCGGTGCTTAGACGACACTATCTACTG
GGCCCTTAATCCTAATGCCAAAGATACAGGCGGTGTGCTATCGGCCGATT
GGCGGACCCCTAACGAAGCCAAATTGGCGTTGCTGGCCCGGATACAACCC
CGCCCATCGGTCTTACTCCGCAACGCCGAGCCAGAGGGCGGGTGGTCTTT
TATGCCTGGCAGCTCGGCGAATCCCATCTGCAATTTGTAA
back to top
Synonyms
Publications