NO19G02570.3, NO19G02570.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02570.3
Unique NameNO19G02570.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1361
Alignment locationchr19:764922..767272 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:764922..767272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02570.3 vs.
Match: XP_005853517.1 (4-hydroxybenzoyl- thioesterase family active site protein [Nannochloropsis gaditana CCMP526]; EKU22844.1 4-hydroxybenzoyl- thioesterase family active site protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 149.8 bits (377), Expect = 1.800e-32
Identity = 88/161 (54.66%), Postives = 108/161 (67.08%), Query Frame = 0 
Query:   56 SSSSSSRPRCSPLLSVTTAATASSATEEAENPSLTQGVFIEHTDRYGMVYHSNYLLFLCRALHLTLGRHVVTRLDNFRFKASARLGHDIAIDVRPKAGKDNTFVTSIKESETPHTTFITADVSAFPL----PERGREGGRED----WAAYTISEEEALRKV 209
            SS+    P C+     T++ T      E +  SL  GVFI+HTDRYGMVYHSNYLLFL RAL+  LGRHV+ +LDNFRFKASARLGHD+ +DV   + K + F  SIKESE PHTTFITA++ A+P+     E GREGGRED    W    IS++  LR+V
Sbjct:   37 SSTRYGAPVCT-----TSSGTKIDGDVEGKT-SLALGVFIQHTDRYGMVYHSNYLLFLSRALYSWLGRHVIVQLDNFRFKASARLGHDVMVDVTRTSDKPSLFSASIKESEAPHTTFITANIVAYPVDEGRKEGGREGGREDRAHQWFVPAISDDAGLREV 191
The following BLAST results are available for this feature:
BLAST of NO19G02570.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853517.11.800e-3254.664-hydroxybenzoyl- thioesterase family active site ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02570NO19G02570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02570.3NO19G02570.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02570.3.cds1NO19G02570.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02570.3.cds2NO19G02570.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02570.3.cds3NO19G02570.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02570.3.cds4NO19G02570.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02570.3.cds5NO19G02570.3.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02570.3.cds6NO19G02570.3.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02570.3 ID=NO19G02570.3|Name=NO19G02570.3|organism=Nannochloropsis oceanica|type=mRNA|length=1361bp
CAACAGGATGAGAATACCTTCCCTTATCCTTTGCTTCGCATTTCTAGCGA
GCGCTCCCGCTGTTGCCTTCCTGCTGCCGCCGCTGCCTTGCTTCTCTTCT
TCGCTTCAGACAGTCACCAACACAATCACGACAAGCAGTCGCTTCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGACCAAGAT
GCAGCCCCTTGTTATCCGTCACGACTGCCGCTACTGCTTCATCTGCGACA
GAGGAAGCGGAAAACCCGAGCTTGACTCAAGGAGTATTCATCGAGCATAC
CGACAGGTACGGGATGGTCTACCACTCCAACTACCTGCTCTTCCTCTGTC
GCGCTCTCCACCTCACCCTGGGCCGGCACGTGGTGACACGCCTAGATAAC
TTTCGGTTCAAAGCATCGGCTCGCCTGGGCCACGATATCGCCATCGACGT
GAGGCCCAAGGCGGGGAAAGACAACACTTTCGTCACCAGCATCAAGGAAA
GCGAAACTCCTCACACTACCTTTATCACCGCGGACGTATCGGCCTTCCCC
CTTCCTGAGCGAGGAAGGGAGGGAGGAAGGGAGGATTGGGCTGCATATAC
GATCTCGGAGGAAGAGGCATTGAGGAAGGTGGTGGCCTCCCCCGACAAGG
TCATGGAGGCCGTTTTGTGGACCGACGAGCTGGGAGTGCACGGCCTGCTC
ACACCGCATGCCGTCCTTTCCCTGTTTGAGCGGGGAAGGAGTGATTCCCT
GGGTGGTCCGGACCGCCTGGAGGAGCTCATGGATGACGGCTACATGTTCG
TCGTCGCCCGCATCGACGGCTACCGCTTCGACCCCTCCCTCCGTCTCGAG
GAGGGAGAGGCCCTTCAAGTGCTCGGCCGATTTAAGCCCAAGTCCGACGC
CATCGTTGTATGCGAGCAGGTGGGAGGAAAGGAAAAAGGAGGGCGGGAGA
GGAAGAGGACAGGCTACAGACCGATGGTTGCATCTTTTCTGAATCTTTCC
TTCATGCAGTCATTTAAGCCCACATACTATCGTCGCATTTCCTCCTCCCC
TTTTTCCTTCTTACTCTACCGCTTCCCTTTCCCCTCTCCTCCGGGTAATT
TTGTCAAGGTCCTCATCGTCAAGGCCACCCAACAGATCGTGGCTCAGGCC
CTCGTGACGCTTGCCTGCATCGGCGCCGTGGATGGCAAATTGCGAGGCGT
GCCTTCCAAGGCCCTTGAGAGTATGAACATGGGCACGACGTAGAATCACG
ACAGGGTAGGACAGAAAAAGAGAGAGGAGAGCAGGGAAATGTATTTCTAG
ATGTGGAGGGAGGAGGCAGGCAGGACATGCCAAAATGAAGTAATAATTGT
AAGGTTGTCCG
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protein sequence of NO19G02570.3

>NO19G02570.3-protein ID=NO19G02570.3-protein|Name=NO19G02570.3|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MRIPSLILCFAFLASAPAVAFLLPPLPCFSSSLQTVTNTITTSSRFSSSS
SSSSSSSSSSSRPRCSPLLSVTTAATASSATEEAENPSLTQGVFIEHTDR
YGMVYHSNYLLFLCRALHLTLGRHVVTRLDNFRFKASARLGHDIAIDVRP
KAGKDNTFVTSIKESETPHTTFITADVSAFPLPERGREGGREDWAAYTIS
EEEALRKVVASPDKVMEAVLWTDELGVHGLLTPHAVLSLFERGRSDSLGG
PDRLEELMDDGYMFVVARIDGYRFDPSLRLEEGEALQVLGRFKPKSDAIV
VCEQVGGKEKGGRERKRTGYRPMVASFLNLSFMQSFKPTYYRRISSSPFS
FLLYRFPFPSPPGNFVKVLIVKATQQIVAQALVTLACIGAVDGKLRGVPS
KALESMNMGTT*
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mRNA from alignment at chr19:764922..767272-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02570.3 ID=NO19G02570.3|Name=NO19G02570.3|organism=Nannochloropsis oceanica|type=mRNA|length=2351bp|location=Sequence derived from alignment at chr19:764922..767272- (Nannochloropsis oceanica)
CAACAGGATGAGAATACCTTCCCTTATCCTTTGCTTCGCATTTCTAGCGA
GCGCTCCCGCTGTTGCCTTCCTGCTGCCGCCGCTGCCTTGCTTCTCTTCT
TCGCTTCAGACAGTCACCAACACAATCACGACAAGCAGTCGCTTCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGACCAAGAT
GCAGCCCCTTGTTATCCGTCACGACTGCCGCTACTGCTTCATCTGCGACA
GAGGAAGCGGAAAACCCGAGCTTGACTCAAGGAGTATTCATCGAGCATAC
CGACAGGTGTACGTTGTTACGTCCTTGCTTCCCTCCTCCTCCTAACCTTT
CCTTCCTGGTTTTTGTTGCACATGTATTCGTATGATCCCATGTAGCATTT
CCTTATTTAATTTCGTCGAACATCTTTTCTGCTCTTTAGCATCTCATTCC
CTCCCTGTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCTA
GACGGGATGGTCTACCACTCCAACTACCTGCTCTTCCTCTGTCGCGCTCT
CCACCTCACCCTGGGCCGGCACGTGGTGACACGCCTAGATAACTTTCGGT
TCAAAGCATCGGCTCGCCTGGGCCACGATATCGCCATCGACGTGAGGCCC
AAGGCGGGGAAAGACAAGTAAGCAGGGAGAAAGAGAGGGCAGGAGGGAAG
GCGCGGAGGTGCGTGAGATTGAATCGTTTGAGGTCTCCGCGCGCCTAGTT
TATTTGTTAATACATTCAATCTTAATCTTCTTGGGGGGGAGGCGGAGAAG
AAAAGAAAGAAGGAGGACATGTGCAGTGCAGCGACTCTGACATTCATGCC
GTCATTGATCCTCCCTCCTTCCCTTCCTCCCTTCCTCCCTTCCTCCCTCC
CAGCACTTTCGTCACCAGCATCAAGGAAAGCGAAACTCCTCACACTACCT
TTATCACCGCGGACGTATCGGCCTTCCCCCTTCCTGAGCGAGGAAGGGAG
GGAGGAAGGGAGGATTGGGCTGCATATACGATCTCGGAGGAAGAGGCATT
GAGGAAGGTAAAGAGGGAGGGAGCGGGAAGGGGAGGAAGAGTATAAGGGG
AGAAGATTGCTTGGCGGGACGACTTGACAAGGTGCTTGTATCTCGGCCAG
GTGACTTATTTTTTCGACACTCCCTCCCTCCCCCCCTCCCTCCCTCCCTC
CCTCCCAAGGTGGTGGCCTCCCCCGACAAGGTCATGGAGGCCGTTTTGTG
GACCGACGAGCTGGGAGTGCACGGCCTGCTCACACCGCATGCCGTCCTTT
CCCTGTTTGAGCGGGGAAGGAGTGATTCCCTGGGTGTACGTAGCGCCTTG
TCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGCCTACCTTTTCTT
GGCTGAGATGAATAGAGGGTGGCATTATATCTACATATATACATATATGT
AGATATATGTATATGTATGTGGGTGTCTGTGTGTCTGTATCTGTCTCTCT
GTGCACATTAATCTACTCCTTTACACCTCCATACACTCAGGGTCCGGACC
GCCTGGAGGAGCTCATGGATGACGGCTACATGTTCGTCGTCGCCCGCATC
GACGGGTACGATCATGAGATGGGCCTTCCCTCCCTCCCTTCCCTTCATCC
CTCCCTCCTTCCCTGCCCCCCTCTTTTCTACATTCTCCTTCTTGATGGCT
CGTGGTATCTTTGTCATTAATAAGAGCCTAAAGACTTACTGTCCTCTGTC
CGCTTACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CATGTCCAGCTACCGCTTCGACCCCTCCCTCCGTCTCGAGGAGGGAGAGG
CCCTTCAAGTGCTCGGCCGATTTAAGCCCAAGTCCGACGCCATCGTTGTA
TGCGAGCAGGTGGGAGGAAAGGAAAAAGGAGGGCGGGAGAGGAAGAGGAC
AGGCTACAGACCGATGGTTGCATCTTTTCTGAATCTTTCCTTCATGCAGT
CATTTAAGCCCACATACTATCGTCGCATTTCCTCCTCCCCTTTTTCCTTC
TTACTCTACCGCTTCCCTTTCCCCTCTCCTCCGGGTAATTTTGTCAAGGT
CCTCATCGTCAAGGCCACCCAACAGATCGTGGCTCAGGCCCTCGTGACGC
TTGCCTGCATCGGCGCCGTGGATGGCAAATTGCGAGGCGTGCCTTCCAAG
GCCCTTGAGAGTATGAACATGGGCACGACGTAGAATCACGACAGGGTAGG
ACAGAAAAAGAGAGAGGAGAGCAGGGAAATGTATTTCTAGATGTGGAGGG
AGGAGGCAGGCAGGACATGCCAAAATGAAGTAATAATTGTAAGGTTGTCC
G
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Coding sequence (CDS) from alignment at chr19:764922..767272-

>NO19G02570.3 ID=NO19G02570.3|Name=NO19G02570.3|organism=Nannochloropsis oceanica|type=CDS|length=1236bp|location=Sequence derived from alignment at chr19:764922..767272- (Nannochloropsis oceanica)
ATGAGAATACCTTCCCTTATCCTTTGCTTCGCATTTCTAGCGAGCGCTCC
CGCTGTTGCCTTCCTGCTGCCGCCGCTGCCTTGCTTCTCTTCTTCGCTTC
AGACAGTCACCAACACAATCACGACAAGCAGTCGCTTCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGACCAAGATGCAGCCC
CTTGTTATCCGTCACGACTGCCGCTACTGCTTCATCTGCGACAGAGGAAG
CGGAAAACCCGAGCTTGACTCAAGGAGTATTCATCGAGCATACCGACAGG
TACGGGATGGTCTACCACTCCAACTACCTGCTCTTCCTCTGTCGCGCTCT
CCACCTCACCCTGGGCCGGCACGTGGTGACACGCCTAGATAACTTTCGGT
TCAAAGCATCGGCTCGCCTGGGCCACGATATCGCCATCGACGTGAGGCCC
AAGGCGGGGAAAGACAACACTTTCGTCACCAGCATCAAGGAAAGCGAAAC
TCCTCACACTACCTTTATCACCGCGGACGTATCGGCCTTCCCCCTTCCTG
AGCGAGGAAGGGAGGGAGGAAGGGAGGATTGGGCTGCATATACGATCTCG
GAGGAAGAGGCATTGAGGAAGGTGGTGGCCTCCCCCGACAAGGTCATGGA
GGCCGTTTTGTGGACCGACGAGCTGGGAGTGCACGGCCTGCTCACACCGC
ATGCCGTCCTTTCCCTGTTTGAGCGGGGAAGGAGTGATTCCCTGGGTGGT
CCGGACCGCCTGGAGGAGCTCATGGATGACGGCTACATGTTCGTCGTCGC
CCGCATCGACGGCTACCGCTTCGACCCCTCCCTCCGTCTCGAGGAGGGAG
AGGCCCTTCAAGTGCTCGGCCGATTTAAGCCCAAGTCCGACGCCATCGTT
GTATGCGAGCAGGTGGGAGGAAAGGAAAAAGGAGGGCGGGAGAGGAAGAG
GACAGGCTACAGACCGATGGTTGCATCTTTTCTGAATCTTTCCTTCATGC
AGTCATTTAAGCCCACATACTATCGTCGCATTTCCTCCTCCCCTTTTTCC
TTCTTACTCTACCGCTTCCCTTTCCCCTCTCCTCCGGGTAATTTTGTCAA
GGTCCTCATCGTCAAGGCCACCCAACAGATCGTGGCTCAGGCCCTCGTGA
CGCTTGCCTGCATCGGCGCCGTGGATGGCAAATTGCGAGGCGTGCCTTCC
AAGGCCCTTGAGAGTATGAACATGGGCACGACGTAG
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Synonyms
Publications