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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr19 | genome | chr19:760792..764386 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G02560.1 vs.
Match: CBJ28173.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 351.7 bits (901), Expect = 3.000e-93 Identity = 184/337 (54.60%), Postives = 218/337 (64.69%), Query Frame = 0
Query: 7 KTPVRAIYNETDLAAFHKSKTYADFLAFVRLCNERVRGIPVSEEYTHKDGPA---VGALVAYLEEAWGWVDDIPPLQQPMRFGNKAFRDWHSRLMATAAAAVEGLLVASEKFVAGTSETAAAAAELLPYLTSAFGHPVRIDYGTGHESSFFVFLYGLFRFQVLALDDLTAAVLQGFRSYLRTLRRLQAVYMLEPAGSHGVWGLDDYFCLVFYLGSSQLVDHPTLTPSAIHSDATLQAQKDDYLYLAQVSFIKELKARAPFAESSPMLNDISALPSWSKVNTGMLRLYEGEVLGKLPVIQHFLFGDFFPATWIPSP-PTDGPLPNTSHTGLETTKAPW 340
+ PVRAI TDL F +S TY + + F+RLCN+ V G+ S A V +V L + WVDDIPP+ +PMRFGNKAFR W+ RL A V+ LL GT AAA EL+PYL +FGHP RIDYGTGHE+SF V+L LF+ L +DL A+LQ F SYL+ +RRLQ+VYMLEPAGSHGVWGLDDY CL F GS+QL+DHP++ P + D L K DYLYL + FIK LK A F E PMLNDIS LPSW KVNTGM RLYEG+VLGK+PVIQHFLFG P TW PSP P P+ +S G +APW
Sbjct: 4 RVPVRAIRTVTDLNHFKQSPTYKELMTFIRLCNDAVMGVRASSLQLDTPDTAMDTVSRIVRMLRQMGSWVDDIPPIDEPMRFGNKAFRSWYQRLEQEAGGMVDTLL-------EGTGHEAAAV-ELVPYLLVSFGHPSRIDYGTGHETSFVVWLCCLFKLGSLTKEDLAPAILQVFYSYLQVMRRLQSVYMLEPAGSHGVWGLDDYHCLPFLWGSAQLIDHPSIKPHDVLDDNVLDEGKHDYLYLGAIDFIKSLKKGAAFGECCPMLNDISQLPSWKKVNTGMQRLYEGDVLGKMPVIQHFLFGSLLPCTWEPSPAPAVNPVAVSSFGG----RAPW 328
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G02560.1 ID=NO19G02560.1|Name=NO19G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1349bp
AGGAGAGCGAGCAGGCAATAGAGCTCACGGAGGACAAGCTCGAGAACCAC
ATGTATCATAGAAGCATGCATAGAAACACAGGCCGCTGCACTCCCTTCCT
GCTTTCACTTTATCACTTCAGCCCTTTGCGTCGTTGTCAGCAGAATGTCG
GCGTCGCCACACAAGACGCCTGTACGGGCCATTTACAATGAGACCGACCT
AGCGGCCTTCCACAAGAGCAAGACCTACGCCGACTTCTTGGCTTTTGTCC
GTCTGTGCAATGAGCGGGTGCGCGGCATTCCCGTCAGTGAGGAGTACACA
CACAAGGATGGCCCTGCCGTCGGTGCTTTGGTGGCTTACTTGGAGGAGGC
TTGGGGGTGGGTAGATGACATTCCGCCGTTACAGCAGCCCATGCGCTTCG
GGAACAAGGCTTTTCGAGACTGGCACTCCCGATTGATGGCCACAGCAGCG
GCAGCAGTTGAGGGGTTGCTCGTGGCGTCAGAGAAATTTGTTGCTGGCAC
GTCGGAAACTGCTGCTGCTGCTGCTGAGCTCCTTCCCTACCTCACCTCCG
CCTTTGGCCATCCCGTCCGCATCGACTATGGCACTGGCCACGAATCCTCT
TTCTTCGTCTTCCTTTACGGCCTCTTCCGATTTCAAGTCCTGGCCCTCGA
TGACCTCACGGCCGCCGTCCTCCAGGGCTTCCGCTCTTACCTCCGGACCC
TGCGTCGCCTGCAGGCAGTATATATGCTCGAACCGGCCGGCTCCCACGGC
GTCTGGGGCCTCGACGATTATTTTTGTCTCGTTTTCTACTTGGGCAGCTC
CCAGCTCGTGGACCATCCCACCCTCACCCCTTCTGCCATTCACAGCGACG
CCACCCTCCAAGCTCAAAAAGACGACTATCTCTACCTCGCGCAAGTCTCC
TTTATAAAAGAGCTCAAGGCCCGCGCACCCTTTGCTGAATCCTCCCCAAT
GCTCAACGATATCTCTGCCCTCCCTTCCTGGTCAAAGGTCAACACCGGCA
TGCTCCGCCTCTACGAAGGCGAGGTGCTGGGGAAGCTCCCCGTCATCCAG
CATTTTCTCTTTGGTGACTTTTTCCCCGCCACATGGATTCCCTCCCCGCC
CACCGACGGCCCACTTCCCAACACCTCGCACACGGGTCTCGAAACGACCA
AAGCCCCCTGGTACGGAGAAACACAGAAGGCCCAAGCGTCACGGCCAATG
CCCATGTCGCCCCTGCAAAAAGAGCTCCTGGAGAAGGCAAAGACGGAGGA
GGAGAGGGAGGAGGAGGAGGAGGAGGAGGAAAAGGGAGGGGGGGAAGGAA
GGGGGGAAGGAGGGAAGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG back to topprotein sequence of NO19G02560.1 >NO19G02560.1-protein ID=NO19G02560.1-protein|Name=NO19G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MSASPHKTPVRAIYNETDLAAFHKSKTYADFLAFVRLCNERVRGIPVSEE
YTHKDGPAVGALVAYLEEAWGWVDDIPPLQQPMRFGNKAFRDWHSRLMAT
AAAAVEGLLVASEKFVAGTSETAAAAAELLPYLTSAFGHPVRIDYGTGHE
SSFFVFLYGLFRFQVLALDDLTAAVLQGFRSYLRTLRRLQAVYMLEPAGS
HGVWGLDDYFCLVFYLGSSQLVDHPTLTPSAIHSDATLQAQKDDYLYLAQ
VSFIKELKARAPFAESSPMLNDISALPSWSKVNTGMLRLYEGEVLGKLPV
IQHFLFGDFFPATWIPSPPTDGPLPNTSHTGLETTKAPWYGETQKAQASR
PMPMSPLQKELLEKAKTEEEREEEEEEEEKGGGEGRGEGGK* back to topmRNA from alignment at chr19:760792..764386- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G02560.1 ID=NO19G02560.1|Name=NO19G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=3595bp|location=Sequence derived from alignment at chr19:760792..764386- (Nannochloropsis oceanica)
AGGAGAGCGAGCAGGCAATAGAGCTCACGGAGGACAAGCTCGAGAACCAC
ATGTATCATAGAAGCATGCATAGAAACACAGGCCGCTGCACTCCCTTCCT
GCTTTCACTTTATCACTTCAGCCCTTTGCGTCGTTGTCAGCAGAATGTCG
GCGTCGCCACACAAGACGCCTGTACGGGCCATTTACAATGAGACCGACCT
AGCGGCCTTCCACAAGAGCAAGGTAAGGAAGGAAACGGAAGAGGAGGCAG
CAGAATGAGAACTGTGCAGTGAAATGCTTGAGAGAATGTGAAGAGGTTCT
ATGTTCAAGGGAAATTTATGTCGGTAAGCTGCAGCCGACGGAAGCATTTG
TTCCGTCATCAACCTACACATGTTCCTCCTCCCTTTATCCCCTCCCTTCA
TGGTCCTCGCATTTCTTTCGGTCTGTTGCCTTTTCTCGAAGACCTACGCC
GACTTCTTGGCTTTTGTCCGTCTGTGCAATGAGCGGGTGCGCGGCATTCC
CGTCAGTGAGGAGTACACACACAAGGATGGGTAAGGGGGAAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAAGAGGAGGTCCATAGAGACGGATGATTGTGT
TTATGTTTCCTCATGATCACGGTTCACATAATGATGCCTGATTTCTCCCT
TCATTTCCTCCGTCCTTTCATTCATTTCTTTCATTTCCTCCGTCCCTCTC
CCGTTGCTCAGCCCTGCCGTCGGTGCTTTGGTGGCTTACTTGGAGGAGGC
TTGGGGGTGGGTAGATGACATTCCGCCGTTACAGCAGGTGAGAAAGAGAG
GGGAAAGGGGGGGGGAGGAGAGGAAGACAGGGGGAAGACAGGGGGGCCGG
TGGGGGAGGGGTAAGAATGTGGCGGAAGGGAGAAAGCATTCGTCCCTGCA
GCAGGTGAGAAAAAGAGAGGCGTGGGGGGGGGGGGGGGGGGGAGGCGTAG
GAAAGTGAGGGATGATAATGGGGAATAGACGTACCCGCATGGTATCTGTT
GCCTGCTATTTGTTGTTCTTGCTGCCCACCACCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGCCCATGCGC
TTCGGGAACAAGGCTTTTCGAGACTGGCACTCCCGATTGATGGCCACAGC
AGCGGCAGCAGTTGAGGGGTTGCTCGTGGCGTCAGAGGTGAGGACTGCAG
GGAGGGAGAGAGGGAGGGAGGGAGGGAGAGGGGGGGGAATATACGACAGC
AGGTAACCAAGTTCGAACTTCCTTACACTCAAGTTTCCACTTCCTCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCCCCT
TTCTCACCTAGAAATTTGTTGCTGGCACGTCGGAAACTGCTGCTGCTGCT
GCTGAGCTCCTTCCCTACCTCACCTCCGCCTTTGGCCATCCCGTCCGCAT
CGACTATGGCACTGGTACCCCTCCCCCCCTCCCTCCCTCCGTCCCTCTCT
CCCTCCGTCCCTCCCTCCCATTTCTTTCTCTCTGATCGTCCCCCTCTCTT
TTTGCACGCGCAGATTCTCGAATAAAGTCCTCACCTTTCCACTCCATGCC
CCTCCCTTCCTTCCTCCCTCCCTCCCTCCTTTCAGGCCACGAATCCTCTT
TCTTCGTCTTCCTTTACGGCCTCTTCCGATTTCAAGTCCTGGCCCTCGAT
GACCTCACGGTACCTTCCCTTCCTCCCTCCTTCCCTCCCTCCCTCCCTTC
TTCAATCCCATCCACCAAAGAGACACACTCCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCAGGCCGCCGTCCTCCAG
GGCTTCCGCTCTTACCTCCGGACCCTGCGTCGCCTGCAGGCAGTATATAT
GCTCGAACCGGCCGGTGAGGGGGAGGGAGGGAGGGAGGGAGTGAGGGAGG
GAGGGAGGGAAGGGGAGAAGTAACTATTTGAGGAGTGTAGCCTCGGTCTT
TCCCATCTGAGGAAGGGAGGGAGGGAGGGAGAATGGGAAGGAGGGAGGGA
AGGAAGCAAATCATGTCCAGGCAGGCGGTGTGTAGTGATGCCTCAAGACG
TTGGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCT
CCCACGGCGTCTGGGGCCTCGACGATTATTTTTGTCTCGTTTTCTACTTG
GGCAGCTCCCAGCTCGTGGACCATCCCACCCTCACCCCTTCTGCCATTCA
CAGGTGCAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAAGGAGGGGAGGGAGGACGGGACGGAGGGAGGGGAAGGGAAGGGAA
GCAATGCAAGTATCAGTCACTCACTCTTTCTGACATCCCTCCCTCCTTCC
CTCCCTCCCTCCTTCCCTCCCTCCCTCCTTCCCTCCCTCCCCTCCCCAGC
GACGCCACCCTCCAAGCTCAAAAAGACGACTATCTCTACCTCGCGCAAGT
CTCCTTTATAAAAGAGCTCAAGGCCCGCGCACCCTTTGCTGAATCCTCCC
CAATGCTCAACGATATCTCTGCCCTCCCTTCCTGGTCAAAGGTAGTCCTC
GCCCTCGCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCTTGCGCCGAAATG
CAATCGACATCCATGCCCGCCACTCCCTTCCTCCTTCCCTCCCTCCCTCC
CTCCCTCCCTCCTTCAGGTCAACACCGGCATGCTCCGCCTCTACGAAGGC
GAGGTGCTGGGGAAGCTCCCCGTCATCCAGCATTTTCTCTTTGGGTGGGT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGTGACA
CCCTCCCCCTCCAAGCCTTTTACATGCATCACCACCTTCCTCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCCCAGTGACTTTTTCCCCGCCAC
ATGGATTCCCTCCCCGCCCACCGACGGCCCACTTCCCAACGTACGTGCTC
TCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCTTCTATCCCCCTCTA
TTCCTCACTCACTTCCTTCCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCAGACCTCGCACACGGGTCTCGAAACGACCAAAGCCCCCTGGTACGGA
GAAACACAGAAGGTAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGATAGGAGGGAGAAAGGGGGGAGGGAGGGAGG
GAAGGAACGTGGGAGGGAAGGAGAGAAGAAAGAAATGAAAGCCCAAAGGA
GAAAAGGCATCCGATTGTCGATGCTAATGTCCCTCCCTCCCTCCCTCCCT
CCCTCCTTTCCTCCCTCCCTCCTTCCCTCCCTCCCTCCTTCCCTCCCTCC
CTCCCTCCCTTCCTTCCTTCCTCAGGCCCAAGCGTCACGGCCAATGCCCA
TGTCGCCCCTGCAAAAAGAGCTCCTGGAGAAGGCAAAGACGGAGGAGGAG
AGGGAGGAGGAGGAGGAGGAGGAGGAAAAGGGAGGGGGGGAAGGAAGGGG
GGAAGGAGGGAAGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG back to topCoding sequence (CDS) from alignment at chr19:760792..764386- >NO19G02560.1 ID=NO19G02560.1|Name=NO19G02560.1|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at chr19:760792..764386- (Nannochloropsis oceanica)
ATGTCGGCGTCGCCACACAAGACGCCTGTACGGGCCATTTACAATGAGAC
CGACCTAGCGGCCTTCCACAAGAGCAAGACCTACGCCGACTTCTTGGCTT
TTGTCCGTCTGTGCAATGAGCGGGTGCGCGGCATTCCCGTCAGTGAGGAG
TACACACACAAGGATGGCCCTGCCGTCGGTGCTTTGGTGGCTTACTTGGA
GGAGGCTTGGGGGTGGGTAGATGACATTCCGCCGTTACAGCAGCCCATGC
GCTTCGGGAACAAGGCTTTTCGAGACTGGCACTCCCGATTGATGGCCACA
GCAGCGGCAGCAGTTGAGGGGTTGCTCGTGGCGTCAGAGAAATTTGTTGC
TGGCACGTCGGAAACTGCTGCTGCTGCTGCTGAGCTCCTTCCCTACCTCA
CCTCCGCCTTTGGCCATCCCGTCCGCATCGACTATGGCACTGGCCACGAA
TCCTCTTTCTTCGTCTTCCTTTACGGCCTCTTCCGATTTCAAGTCCTGGC
CCTCGATGACCTCACGGCCGCCGTCCTCCAGGGCTTCCGCTCTTACCTCC
GGACCCTGCGTCGCCTGCAGGCAGTATATATGCTCGAACCGGCCGGCTCC
CACGGCGTCTGGGGCCTCGACGATTATTTTTGTCTCGTTTTCTACTTGGG
CAGCTCCCAGCTCGTGGACCATCCCACCCTCACCCCTTCTGCCATTCACA
GCGACGCCACCCTCCAAGCTCAAAAAGACGACTATCTCTACCTCGCGCAA
GTCTCCTTTATAAAAGAGCTCAAGGCCCGCGCACCCTTTGCTGAATCCTC
CCCAATGCTCAACGATATCTCTGCCCTCCCTTCCTGGTCAAAGGTCAACA
CCGGCATGCTCCGCCTCTACGAAGGCGAGGTGCTGGGGAAGCTCCCCGTC
ATCCAGCATTTTCTCTTTGGTGACTTTTTCCCCGCCACATGGATTCCCTC
CCCGCCCACCGACGGCCCACTTCCCAACACCTCGCACACGGGTCTCGAAA
CGACCAAAGCCCCCTGGTACGGAGAAACACAGAAGGCCCAAGCGTCACGG
CCAATGCCCATGTCGCCCCTGCAAAAAGAGCTCCTGGAGAAGGCAAAGAC
GGAGGAGGAGAGGGAGGAGGAGGAGGAGGAGGAGGAAAAGGGAGGGGGGG
AAGGAAGGGGGGAAGGAGGGAAGTGA back to top
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