NO19G02470.1, NO19G02470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02470.1
Unique NameNO19G02470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1964
Alignment locationchr19:719698..723308 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:719698..723308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02470.1 vs.
Match: CBJ32671.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 302.8 bits (774), Expect = 1.300e-78
Identity = 145/219 (66.21%), Postives = 174/219 (79.45%), Query Frame = 0 
Query:    5 DTEATSEVEGSGGK-MVKAERIILVRHGESMGNVDEGTYVVVPDWKVPLTKKGHQDGHIAGLRIKELVGEKPLYIYCSPYMRTKQTLARIVECLEGNTIVGVREEPRLTEQAFGNFQNVEGVRYSKAERARFGRFYYRFPDGESGLDVYSRVTSFLSTLYGDFTHRAIKDKDLNVVVVTHGLTLRLLIMRWFQYSISDFEESLNPPNGGLVVINRLTDE 223
            D E+     G G + +VK ERII+VRHGES+GN DE TYV VPDWK+PLTKKG  +G  AG +IKE +G+KPL+IY SPY+RTKQTLA +VE  + N IVGVREEPRLTEQ FGNFQN+  +  SKAERARFGRFYYRFP GESGLDVY+R TSF++T++ DF + +I   DLNV++VTHGLTLRLL+MRWFQYSI+DFEE+LNP NG  VV+ R   E
Sbjct:  100 DQESLGLFSGDGKRRVVKPERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIARDDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMERKEKE 318
The following BLAST results are available for this feature:
BLAST of NO19G02470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ32671.11.300e-7866.21conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02470NO19G02470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02470.1NO19G02470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02470.1.cds1NO19G02470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02470.1.cds2NO19G02470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02470.1.cds3NO19G02470.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02470.1.cds4NO19G02470.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02470.1.cds5NO19G02470.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02470.1.cds6NO19G02470.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02470.1.cds7NO19G02470.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02470.1.cds8NO19G02470.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02470.1 ID=NO19G02470.1|Name=NO19G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1964bp
ATGCAAAGCAAGGCAGCGATGGCTCGATTGAGCACATAGGGTGTGGGTTT
GTGTCCATGGTATTTGTTTTGCAGGTCTTTATTATTGTTTTCTGTCCACG
CTCGCACAGCGTCATCATGATGGGCGGCTGACAATGCTTCCGCTTGTCAC
ACTCCTCCAATGTATTATTATAATCATTCGTATCCTCACATAGGCGAGAT
CAAGCACTCATCGCCAGCCCCACCCCACCAGATTGGGGGGACTAGAGGAG
GAGGAGGGGCAAAGGATTAGGCTGACGCAGGCTTGCGACAACATTTTGCC
CGGTTTCAAGCAAGGGGGCGGACAAGCAAGGAGAGGGAGGGGAGAACGGC
CTGAGACAAATAAAGGATGCTGGTGATCCTTCGCCCTTTCCGAGCCGCCC
TCGGTGACCTCATGGTCGGGGGCAAGCGGCAGCGGCCGACACACCCCTCT
GCTGCTGCTGCTGCTGCTGCAACTGCTACACCCTCTGTCGCCTTCCCCAA
ACCCACCTTTGCTCGCACGAGCACATTTTTATTTCCCTCTTCTCCGTTTG
TCACCCTGGCTGTTGTTGCCGGGGGCCTCCCTTCTTCTCTTCCTCCTTCG
CTCCCTCCCTCCGCGCGACAAGGCCATCGGCAAAGAAGGGGAGCAATACC
GTGGGGGGTTTCCCCTCTCTCCTCCCCCCCTCCCTCTCGTCCTATATGAA
AGGATTTGACACTGAAGCCACCTCGGAGGTGGAGGGGTCGGGAGGGAAGA
TGGTGAAGGCGGAGAGGATTATCCTGGTGCGGCATGGAGAGAGCATGGGG
AACGTGGACGAAGGGACCTACGTTGTCGTCCCCGACTGGAAGGTACCGCT
AACCAAAAAAGGGCATCAAGACGGCCACATTGCAGGACTAAGGATTAAGG
AGCTGGTGGGCGAGAAACCTCTGTACATTTACTGCAGCCCTTACATGAGG
ACTAAGCAGACACTAGCCCGTATTGTAGAGTGCTTGGAAGGCAACACCAT
TGTGGGTGTCCGGGAAGAACCACGCCTGACAGAGCAGGCATTTGGAAACT
TCCAGAACGTTGAAGGCGTGAGGTATTCCAAGGCTGAACGGGCCCGCTTC
GGGCGATTTTATTACAGGTTCCCCGACGGGGAGAGCGGCCTGGACGTCTA
CTCGCGCGTCACCTCCTTCCTCTCCACCCTCTACGGCGACTTCACGCACA
GAGCCATCAAAGACAAAGACCTTAATGTTGTCGTGGTCACGCACGGCCTG
ACTCTCCGGCTGCTCATCATGCGTTGGTTCCAGTACTCTATCTCCGATTT
CGAAGAGAGCCTCAACCCTCCAAACGGAGGTCTCGTGGTCATAAACCGAC
TAACCGACGAGAAGGGCAATCAGTGGTATGAAATGGATGACGCCTCGTGC
GAATTAATCGGCTTCCAAAAACGACACACCAAAGGCTCCTTGTGGCGATT
GCTGCGAGATATCCATGAGGACGTCGAAGAGGAAGGTGAGGAGGACGAGG
ATGGGGGTGATGGCCCGGGGGAGGGAGGAATGTCGCGTGAAGGAGGAGGG
AGGATGCCGGCATCGGTGGAGAAAGAGAGGAGAGAGAGGGCGAGAGAGAG
GGAGAGATTGGAGAGGGAGGAGGAGGGATAGGTGGGGGGGAGAAAGGGAG
GAAGTGAGGGAGGGAGGGGAGGGAGGGAGGGAGGGAGAGAGAGAGGAAGG
AAGATCAATTTAACGTGTACATAGATAGAACCCCAATCTCACATTGGAAT
GACAAAGCATAAGGACGGCAGTGGAAAGAAGTAACCGGAAGATAAAGATA
CGTGTAATGGTGCGCTTGATCGTGCTCAACATAAATACATATACATACAC
ACACACACACACACACATATATATATATGTATGTGTGTGTGCGCATGTGT
GTGAAGTTATGTTGGATGTGAAATCCGTCGATCATATGTGAGTGTGATAA
ATGGGGTCTCAAGA
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protein sequence of NO19G02470.1

>NO19G02470.1-protein ID=NO19G02470.1-protein|Name=NO19G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MKGFDTEATSEVEGSGGKMVKAERIILVRHGESMGNVDEGTYVVVPDWKV
PLTKKGHQDGHIAGLRIKELVGEKPLYIYCSPYMRTKQTLARIVECLEGN
TIVGVREEPRLTEQAFGNFQNVEGVRYSKAERARFGRFYYRFPDGESGLD
VYSRVTSFLSTLYGDFTHRAIKDKDLNVVVVTHGLTLRLLIMRWFQYSIS
DFEESLNPPNGGLVVINRLTDEKGNQWYEMDDASCELIGFQKRHTKGSLW
RLLRDIHEDVEEEGEEDEDGGDGPGEGGMSREGGGRMPASVEKERRERAR
ERERLEREEEG*
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mRNA from alignment at chr19:719698..723308-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02470.1 ID=NO19G02470.1|Name=NO19G02470.1|organism=Nannochloropsis oceanica|type=mRNA|length=3611bp|location=Sequence derived from alignment at chr19:719698..723308- (Nannochloropsis oceanica)
ATGCAAAGCAAGGCAGCGATGGCTCGATTGAGCACATAGGGTGTGGGTTT
GTGTCCATGGTATTTGTTTTGCAGGTCTTTATTATTGTTTTCTGTCCACG
CTCGCACAGCGTCATCATGATGGGCGGCTGACAATGCTTCCGCTTGTCAC
ACTCCTCCAATGTATTATTATAATCATTCGTATCCTCACATAGGCGAGAT
CAAGCACTCATCGCCAGCCCCACCCCACCAGATTGGGGGGACTAGAGGAG
GAGGAGGGGCAAAGGATTAGGCTGACGCAGGCTTGCGACAACATTTTGCC
CGGTTTCAAGCAAGGGGGCGGACAAGCAAGGAGAGGGAGGGGAGAACGGC
CTGAGACAAATAAAGGATGCTGGTGATCCTTCGCCCTTTCCGAGCCGCCC
TCGGTACGTACACGTCAAGCTTATGCAAAAAGCGCAAGGCATATTTTCTC
CCTCCCTCCCACACTCCCTTTGTCACCTCTAATTCTCCTTTACCCGATCC
CTTCTCTCTCATATCGAACAGGTGACCTCATGGTCGGGGGCAAGCGGCAG
CGGCCGACACACCCCTCTGCTGCTGCTGCTGCTGCTGCAACTGCTACACC
CTCTGTCGCCTTCCCCAAACCCACCTTTGCTCGCACGAGCACATTTTTAT
TTCCCTCTTCTCCGTTTGTCACCCTGGCTGTTGTTGCCGGGGGCCTCCCT
TCTTCTCTTCCTCCTTCGCTCCCTCCCTCCGCGCGACAAGGCCATCGGCA
AAGAAGGGGAGCAATACCGTGGGGGGTTTCCCCTCTCTCCTCCCCCCCTC
CCTCTCGTCCTATATGAAAGGATTTGACACTGAAGCCACCTCGGAGGTGG
AGGGGTCGGGAGGGAAGATGGTGAAGGCGGAGAGGATTATCCTGGTGCGG
CATGGAGAGAGCATGGGGAACGTGGACGAAGGGGTGAGGGAGGAAGGGAG
GGAGGAAGGGAGGGAGGGAGGGAGGAGGTGGCGTTGTACCACAGACACAT
ACGAGACATTTGCTCATTCTATCCTTCGCCATGCGCCTTTCCGCGGCCTC
CCTCAGGCCCTCCCTACCTCCCTCTTCCCCTTCCTCTATCTTAACCCGTT
GACTAGCAACCAAATCACACACCCCTCCCTCTTTCCCTCCCTCAACCCCT
CCCTCCCTCCCTCCCTCTCTCCAGACCTACGTTGTCGTCCCCGACTGGAA
GGTACCGCTAACCAAAAAAGGGCATCAAGACGGTACGTTCTCCCTCCCTC
CCTCCCTCCCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCCTCCATCCTCT
CTTCTGACTCCCTTCTCCCCCCCAAGACCTCTCATTCTCCCCCTCCCTCC
CTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCACC
CTCCCTCCCTCCCTCCCTCCCCCTTATTCCTTCGCCAGGCCACATTGCAG
GACTAAGGATTAAGGAGCTGGTGGGCGAGAAACCTCTGTACATTTACTGC
AGCCCTTACATGAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGC
GGGGTGAAGGGGGGCGACTAGTACATCTACTGTAGCACTGGCAAGAGGTA
AGAGAGGGCGGGAGGAAGGGAGGGAAAGAAGGCGACCTGTACATCTACTA
TCAACCTCTTACCCTCGTGGCCTTGCTTGTCCACCCTCATGACTGTAGGA
CTAAGCAGACACTAGCCCGTATTGTAGAGTGCTTGGAAGGCAACACCATT
GTGGGTGTCCGGGAAGAACCACGCCTGACAGAGCAGGTACGTCATGCCGT
CCCTCCCTCCCTCTCTCCCTCTCTTCCTCTCTCCCTTCCTCTCTCCCTCA
GGCCCCCGACAGCTTTGACGAGAACGACTTACCCTCGCATCCAACCTCTC
CGTGCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCTTGCTTGCTTTCCTCAGGCATTTGGAAACTTCCAG
AACGTTGAAGGCGTGAGGTATTCCAAGGCTGAACGGGCCCGCTTCGGGCG
ATTTTATTACAGGTAGGGAGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAAACCAATGGAAGGAAGAAGGGCAATCAGACGACAAACCTTCCTT
CCGTCTTTAAAGCTAATGGACTACTAATCCTCCTTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCGCCCAGGTTCCCCGACGGGGAGAGCGGC
CTGGACGTCTACTCGCGCGTCACCTCCTTCCTCTCCACCCTCTACGGCGA
CTTCACGCACAGAGCCATCAAAGACAAAGACCTTAATGTTGTCGTGGTCA
CGCACGGCCTGACTCTCCGGCTGGTACGTACCTCCTTCCCCCCCTCTTCC
CCGCCCTGCCTTCCCATGGCATAAATGCTTTGATGTCATCAAGTCCATGA
AACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCACCCTCCCTCAGCTCAT
CATGCGTTGGTTCCAGTACTCTATCTCCGATTTCGAAGAGAGCCTCAACC
CTCCAAACGGAGGTCTCGTGGTCATAAACCGACTAACCGACGAGAAGGTA
CATCCCTCTCTCTCCTCCCTTCCCTCTCTATCCTCCCTCCCTCCCTCCCT
CCCTCCTTCTTCCCTTCCTCTTTCCCTTCCTTCCTCCCCTTCTCTCAGCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTTCCCTTCCTCTTTCCC
TTCCTTCCTCCCCTTCTCTCAGCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCTCTCTTTCAACCCGTCGCTATCGCCATCCTCCCCTCGCTTTTCTTTC
TCATCTTTTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTC
CCTCCCTGCAGGGCAATCAGTGGTATGAAATGGATGACGCCTCGTGCGAA
TTAATCGGCTTCCAAAAACGACACACCAAAGGCTCCTTGTGGCGATTGCT
GCGAGATATCCATGAGGACGTCGAAGAGGAAGGTGAGGAGGACGAGGATG
GGGGTGATGGCCCGGGGGAGGGAGGAATGTCGCGTGAAGGAGGAGGGAGG
ATGCCGGCATCGGTGGAGAAAGAGAGGAGAGAGAGGGCGAGAGAGAGGGA
GAGATTGGAGAGGGAGGAGGAGGGATAGGTGGGGGGGAGAAAGGGAGGAA
GTGAGGGAGGGAGGGGAGGGAGGGAGGGAGGGAGAGAGAGAGGAAGGAAG
ATCAATTTAACGTGTACATAGATAGAACCCCAATCTCACATTGGAATGAC
AAAGCATAAGGACGGCAGTGGAAAGAAGTAACCGGAAGATAAAGATACGT
GTAATGGTGCGCTTGATCGTGCTCAACATAAATACATATACATACACACA
CACACACACACACATATATATATATGTATGTGTGTGTGCGCATGTGTGTG
AAGTTATGTTGGATGTGAAATCCGTCGATCATATGTGAGTGTGATAAATG
GGGTCTCAAGA
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Coding sequence (CDS) from alignment at chr19:719698..723308-

>NO19G02470.1 ID=NO19G02470.1|Name=NO19G02470.1|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at chr19:719698..723308- (Nannochloropsis oceanica)
ATGAAAGGATTTGACACTGAAGCCACCTCGGAGGTGGAGGGGTCGGGAGG
GAAGATGGTGAAGGCGGAGAGGATTATCCTGGTGCGGCATGGAGAGAGCA
TGGGGAACGTGGACGAAGGGACCTACGTTGTCGTCCCCGACTGGAAGGTA
CCGCTAACCAAAAAAGGGCATCAAGACGGCCACATTGCAGGACTAAGGAT
TAAGGAGCTGGTGGGCGAGAAACCTCTGTACATTTACTGCAGCCCTTACA
TGAGGACTAAGCAGACACTAGCCCGTATTGTAGAGTGCTTGGAAGGCAAC
ACCATTGTGGGTGTCCGGGAAGAACCACGCCTGACAGAGCAGGCATTTGG
AAACTTCCAGAACGTTGAAGGCGTGAGGTATTCCAAGGCTGAACGGGCCC
GCTTCGGGCGATTTTATTACAGGTTCCCCGACGGGGAGAGCGGCCTGGAC
GTCTACTCGCGCGTCACCTCCTTCCTCTCCACCCTCTACGGCGACTTCAC
GCACAGAGCCATCAAAGACAAAGACCTTAATGTTGTCGTGGTCACGCACG
GCCTGACTCTCCGGCTGCTCATCATGCGTTGGTTCCAGTACTCTATCTCC
GATTTCGAAGAGAGCCTCAACCCTCCAAACGGAGGTCTCGTGGTCATAAA
CCGACTAACCGACGAGAAGGGCAATCAGTGGTATGAAATGGATGACGCCT
CGTGCGAATTAATCGGCTTCCAAAAACGACACACCAAAGGCTCCTTGTGG
CGATTGCTGCGAGATATCCATGAGGACGTCGAAGAGGAAGGTGAGGAGGA
CGAGGATGGGGGTGATGGCCCGGGGGAGGGAGGAATGTCGCGTGAAGGAG
GAGGGAGGATGCCGGCATCGGTGGAGAAAGAGAGGAGAGAGAGGGCGAGA
GAGAGGGAGAGATTGGAGAGGGAGGAGGAGGGATAG
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Synonyms
Publications