NO19G02460.1, NO19G02460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02460.1
Unique NameNO19G02460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length963
Alignment locationchr19:717071..718876 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:717071..718876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02460.1 vs.
Match: CEL96685.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 201.4 bits (511), Expect = 4.100e-48
Identity = 111/215 (51.63%), Postives = 146/215 (67.91%), Query Frame = 0 
Query:  104 ALYQSGGLHHVQGINVADVFQQVEAKITELGPWGYVLFSVIYIVAEILAIPAVPLSASSGYLFGLINGTAIVVLSATIAAATSFLIGRTLLRSTVEKWMEGYPKFRALDKAIADEGFKIILLLRLSPIFPFALSNYMYGLTAVDFWPYFWATLIGFFPGTLAYVYSGYVGRSLTEGQGMGGAPWYVYAGGIIGLGLVGKLVGDAANKAIGEYEEK 319
            ALY  GG    +GI       +   +I E GP GYV F ++Y VAEI A+PA+PL+AS+GYLFG++ GT  V ++AT+AA+ SFL+GRTLLR  V+++    PKFRA+DK +  EGFK+I LLRLSP  PFA+SNY+Y LT+V F  Y  A+L+GF PGTLAYVYSG +GRSL    G    P+ V    ++GL    K+V D +N AI EY+E+
Sbjct:   92 ALY--GGSIDKEGIVATKFLNEAVRRIEEQGPLGYVYFVLLYTVAEIFAVPAIPLTASAGYLFGIVPGTITVCIAATMAASVSFLLGRTLLRPRVKEFFAENPKFRAVDKVVEKEGFKMIFLLRLSPFLPFAISNYLYSLTSVKFVDYALASLLGFIPGTLAYVYSGVLGRSLVSSVGGEKIPYLVPGLVLVGLFAFLKVVSDLSNAAIREYQEE 304
The following BLAST results are available for this feature:
BLAST of NO19G02460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CEL96685.14.100e-4851.63unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02460NO19G02460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02460.1NO19G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02460.1.cds1NO19G02460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02460.1.cds2NO19G02460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02460.1.cds3NO19G02460.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02460.1.cds4NO19G02460.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02460.1.cds5NO19G02460.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02460.1.cds6NO19G02460.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02460.1 ID=NO19G02460.1|Name=NO19G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=963bp
ATGAAGACGACGACGACGACAAGGAGAAGGGAGAAGTCCGTGACTACCCT
ATCGATGGCTGGAGGGGGAGGAGGAGGGGGAGGGGGAGGAAGGCGGGCAG
GGAGGGAGGGAGGGAAGACAAGCATCATCGAGAAACAGGGAGGGGTTGGA
GTGGGAAGAGGGAAAAAGGTGGTGACGCCGCTGTCGGTATTGGGAGGAGG
AGGGGAGGAAGGGAGGGACGGAGGGATGGAGGGAGGGAAGCGGAGTTTTC
CCAACAAGACGCTGCTGGCCCTGGGAATAGTGCTGCCGACTCTGTTGGCC
ATCTGCGCGGCGCTCTACCAGTCGGGGGGGCTGCACCACGTGCAGGGGAT
AAACGTAGCCGACGTCTTTCAGCAAGTTGAAGCGAAAATCACCGAGCTCG
GTCCGTGGGGCTACGTGCTTTTCTCCGTCATCTACATTGTTGCTGAGATC
CTCGCCATTCCCGCCGTGCCTCTGAGTGCGAGCTCGGGCTATCTTTTTGG
GCTAATCAACGGTACGGCTATCGTGGTTCTCTCGGCTACTATAGCCGCCG
CCACCTCCTTCCTCATTGGCCGAACCCTCCTCCGGTCGACTGTGGAGAAG
TGGATGGAGGGTTATCCCAAGTTCCGAGCCCTTGACAAGGCTATTGCTGA
CGAGGGCTTCAAAATCATCCTCCTCCTCCGCCTTTCACCTATCTTCCCTT
TCGCCCTCTCCAACTACATGTACGGCCTCACCGCAGTTGATTTCTGGCCA
TATTTTTGGGCAACTTTAATCGGCTTTTTCCCCGGGACCCTCGCTTACGT
CTACAGCGGATACGTGGGACGGAGCCTGACGGAGGGCCAAGGGATGGGGG
GCGCGCCGTGGTACGTGTACGCGGGAGGTATTATCGGCCTGGGGCTGGTT
GGGAAGCTGGTAGGGGATGCGGCGAATAAGGCGATAGGGGAGTATGAGGA
GAAGGAGAAGTAG
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protein sequence of NO19G02460.1

>NO19G02460.1-protein ID=NO19G02460.1-protein|Name=NO19G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MKTTTTTRRREKSVTTLSMAGGGGGGGGGGRRAGREGGKTSIIEKQGGVG
VGRGKKVVTPLSVLGGGGEEGRDGGMEGGKRSFPNKTLLALGIVLPTLLA
ICAALYQSGGLHHVQGINVADVFQQVEAKITELGPWGYVLFSVIYIVAEI
LAIPAVPLSASSGYLFGLINGTAIVVLSATIAAATSFLIGRTLLRSTVEK
WMEGYPKFRALDKAIADEGFKIILLLRLSPIFPFALSNYMYGLTAVDFWP
YFWATLIGFFPGTLAYVYSGYVGRSLTEGQGMGGAPWYVYAGGIIGLGLV
GKLVGDAANKAIGEYEEKEK*
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mRNA from alignment at chr19:717071..718876+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02460.1 ID=NO19G02460.1|Name=NO19G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1806bp|location=Sequence derived from alignment at chr19:717071..718876+ (Nannochloropsis oceanica)
ATGAAGACGACGACGACGACAAGGAGAAGGGAGAAGTCCGTGACTACCCT
ATCGATGGCTGGAGGGGGAGGAGGAGGGGGAGGGGGAGGAAGGCGGGCAG
GGAGGGAGGGAGGGAAGACAAGCATCATCGAGAAACAGGGAGGGGTTGGA
GTGGGAAGAGGGAAAAAGGTGGTGACGCCGCTGTCGGTATTGGGAGGAGG
AGGGGAGGAAGGGAGGGACGGAGGGATGGAGGGAGGGAAGCGGAGTTTTC
CCAACAAGACGCTGCTGGCCCTGGGAATAGTGCTGCCGACTCTGTTGGGT
GAGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAC
GGATGGAGCGCTGCGAATGCATTGGAGCCATCTGGTTTTTTAAATTCACC
CCTCCCTCCCGTCCATCCCTCCCTCCCGTCCATCCCTCCCTCCCTTCCCT
CCCTTCCTTCCCTCCCTAGCCATCTGCGCGGCGCTCTACCAGTCGGGGGG
GCTGCACCACGTGCAGGGGATAAACGTAGCCGACGTCTTTCAGCAAGTTG
AAGCGAAAATCACCGAGCTCGGTCCGTGGGGCTACGTGCTTTTCTCCGTC
ATCTACATTGTTGCTGAGGTACGTGAATGTCGCTGGTCCTTCCCTCTCCC
TCCCTCCCTCCTTCCCTCCCTTCCTCCTTGTCAAGGCTGCTCCTTCCTTC
TATCCCTTTTCCCCTCCCCCCCTCCCTCCCTCCTCTCCGCTCTTTCACCC
TCCCTTGATCCTCGTCACCACTCATACCTCCCTTCTGACCCCTCCCTTCC
TCCGTCCCTCCCTCCATAGATCCTCGCCATTCCCGCCGTGCCTCTGAGTG
CGAGCTCGGGCTATCTTTTTGGGCTAATCAACGGTACGGCTATCGTGGTT
CTCTCGGCTACTATAGCCGCCGCCACCTCCTTCCTCATTGGCCGAACCCT
CCTCCGGTCGACTGTGGAGAAGGTAGGCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTTCACCCCTCCTTCCTTCCCTCCTTTACACCTGTTTTCCTCCC
TCCCTCCCTTTCCCCCTCCCTCTTTCGTACAAGCCCACCAACCATCGCTC
CCTCGCTCCCTCCCTCCCTCCCTCCCTTCCCCCCTCCTTCCTTCAGTGGA
TGGAGGGTTATCCCAAGTTCCGAGCCCTTGACAAGGCTATTGCTGACGAG
GGCTTCAAAATCATCCTCCTCCTCCGCCTTTCACCTATCTTCCCTTTCGC
CCTCTCCAACTACATGTGAGTCTTTCTCCTCTCCCTCCCTCCTCCCCTCC
CTCCCCCCCTCCCTCCTCATCGTGTTCCGCCCGTCGAGCCCATCAAAAGG
AGTCCCATATCCCCTCCCTTTCCACCACTCATAAGACACACCCTCCCCTC
CCTCCCTCCTGCAGGTACGGCCTCACCGCAGTTGATTTCTGGCCATATTT
TTGGGCAACTTTAATCGGCTTTTTCCCCGGGACCCTCGCTTACGTCTACA
GCGGGTGAGGAGGGAGGGAGGGAGAGAGGGAGGGCGGGAGGGCAGAGACA
AGAGGTACCTTCTCACTCGAGACAAGTGGAGCTCATGTCACATTCTCATC
ACACCCTTCCTCGCTCCCCTCTCCTCCCTGCCTCCCTCCTTCCCTTCCTC
AGATACGTGGGACGGAGCCTGACGGAGGGCCAAGGGATGGGGGGCGCGCC
GTGGTACGTGTACGCGGGAGGTATTATCGGCCTGGGGCTGGTTGGGAAGC
TGGTAGGGGATGCGGCGAATAAGGCGATAGGGGAGTATGAGGAGAAGGAG
AAGTAG
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Coding sequence (CDS) from alignment at chr19:717071..718876+

>NO19G02460.1 ID=NO19G02460.1|Name=NO19G02460.1|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at chr19:717071..718876+ (Nannochloropsis oceanica)
ATGAAGACGACGACGACGACAAGGAGAAGGGAGAAGTCCGTGACTACCCT
ATCGATGGCTGGAGGGGGAGGAGGAGGGGGAGGGGGAGGAAGGCGGGCAG
GGAGGGAGGGAGGGAAGACAAGCATCATCGAGAAACAGGGAGGGGTTGGA
GTGGGAAGAGGGAAAAAGGTGGTGACGCCGCTGTCGGTATTGGGAGGAGG
AGGGGAGGAAGGGAGGGACGGAGGGATGGAGGGAGGGAAGCGGAGTTTTC
CCAACAAGACGCTGCTGGCCCTGGGAATAGTGCTGCCGACTCTGTTGGCC
ATCTGCGCGGCGCTCTACCAGTCGGGGGGGCTGCACCACGTGCAGGGGAT
AAACGTAGCCGACGTCTTTCAGCAAGTTGAAGCGAAAATCACCGAGCTCG
GTCCGTGGGGCTACGTGCTTTTCTCCGTCATCTACATTGTTGCTGAGATC
CTCGCCATTCCCGCCGTGCCTCTGAGTGCGAGCTCGGGCTATCTTTTTGG
GCTAATCAACGGTACGGCTATCGTGGTTCTCTCGGCTACTATAGCCGCCG
CCACCTCCTTCCTCATTGGCCGAACCCTCCTCCGGTCGACTGTGGAGAAG
TGGATGGAGGGTTATCCCAAGTTCCGAGCCCTTGACAAGGCTATTGCTGA
CGAGGGCTTCAAAATCATCCTCCTCCTCCGCCTTTCACCTATCTTCCCTT
TCGCCCTCTCCAACTACATGTACGGCCTCACCGCAGTTGATTTCTGGCCA
TATTTTTGGGCAACTTTAATCGGCTTTTTCCCCGGGACCCTCGCTTACGT
CTACAGCGGATACGTGGGACGGAGCCTGACGGAGGGCCAAGGGATGGGGG
GCGCGCCGTGGTACGTGTACGCGGGAGGTATTATCGGCCTGGGGCTGGTT
GGGAAGCTGGTAGGGGATGCGGCGAATAAGGCGATAGGGGAGTATGAGGA
GAAGGAGAAGTAG
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Synonyms
Publications