NO19G02280.1, NO19G02280.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G02280.1
Unique Name	NO19G02280.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2136
Alignment location	chr19:653410..656175 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:653410..656175 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO19G02280.1 vs.
Match: XP_002181281.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1]; EEC47204.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 195.7 bits (496), Expect = 5.000e-46
Identity = 102/219 (46.58%), Postives = 139/219 (63.47%), Query Frame = 0

Query:  470 LSSSSSSHHSTPQQ-WVVFTAGPMGAGKSHTLKWLAKRGFFPLDDFVLADPDVIRNELPEIEGYIERNPLMAGQLTHKEAGYVLEILIREGLKEGRNVLVQGSLRDAAWHAQYFQELRECFPGLRIAIIHVTASRETVLSRARRRGIATRRVVPDEVLLASLEETPRAVGVLERQADYCVAIDNDGRGEP-RLVGGCGREGGRGGRREEETWTTFSGVW 687
            LS ++    +TP + W+VFTAG MGAGKS+T++ L ++G FPL  FV  DPD IR  LPE   Y++++P +AG+LT KE+GY+ EIL    L+EG+NVLV GSLRD +W+  YF+ LR  FP LRIAI+H+TA R+ V  RA  R + T R+VP E+L+A+LE+ P++V +L   AD  V + N  R E   LV               +TW TF   W
Sbjct:  284 LSDNNGELCTTPTEPWIVFTAGAMGAGKSYTMRRLVEKGRFPLIAFVSVDPDDIRRHLPEFHLYVDQSPELAGELTRKESGYIAEILTLASLREGKNVLVDGSLRDWSWYKSYFERLRNEFPALRIAILHITAPRDAVFQRAADRAVTTGRIVPQELLVAALEQVPKSVEILSPLADCSVELKNAPRAEDIELV------------TPNQTWETFESNW 490

The following BLAST results are available for this feature:

BLAST of NO19G02280.1 vs.

BLAST of NO19G02280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_002181281.1	5.000e-46	46.58	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO19G02280	NO19G02280	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02280.1	NO19G02280.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02280.1.cds1	NO19G02280.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02280.1.cds2	NO19G02280.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02280.1.cds3	NO19G02280.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02280.1.cds4	NO19G02280.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G02280.1.cds5	NO19G02280.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr19:653410..656175-
coding sequence from alignment at chr19:653410..656175-

mRNA sequence

>NO19G02280.1 ID=NO19G02280.1|Name=NO19G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp
ATGTGCGGGTTCCTTGTTCCACCGAGCTGCATAAAGCTAGTCAGAAGGAC
AGAAAGGAGGTGTAACAACCTTGGAACCATTGCGCTCTCCAAGGACTGCG
GCAACACCCATAGTGGCAACTACACAACAGACGGCGACAGCAGCAGCAGC
CGCAGCAGTGCCACCGCCGCACCTCTTCTTCACTCCCGTCGCACCCACGG
GCACTCCCCTCCTCCCCCAGCCCCTCCCCGGACGTTGTCATTCCTTCCTA
CTCTTCTTACAGACGTGACGGTCGTAGGAAGTGCGAGTGGCAGCGGGCAG
CAGCAGCAGCAGCAGCAGCCGTCCTATCACCCTCACAGGCCGCCGCCGAC
GACGACGCCCAGCAGTACACCTCCGCACATCTCAAACCGCAAGAGAGGCT
CTTCCTTAGTCGGGAGTGGCAACAGCAACAGCAACAGCAGCGTTGGAGGT
GTATTTTCCCGAGCCCGGACACACACACCCTCCGACTCATTTTTTGCCGT
CGAAGAGGGGATAAGCACCAGCAGCGATAAGATAGGTCGTACCAGCAACA
GTAGCAACAGGAAACAGACAAAAGGAGAACGAAGGGAAGCTGAGACTAGA
CAGAAGGGAGGCAAACTGTGGGGTCTAGGTGTGCTGGTGTGCGCTCTAGG
CGGCGTCGGCTTGTTAAGTGTCGGCGTAAGGACACGCCTGCTGCACAGCG
GGATCATCATCATCAGCAGCAGCAGCAGCACCACCACCACCACCACCACC
ACCGCGAGAAGTAAGGTATTGGAGAGACGACAAGACACGTTGGAGCAGCA
GCTAGGCGACGCAGCCGCGAGGAGTGGAGAGAGGGAGGGCGAGGTGGACG
ACGGGGGGATAATGAACGGTAAAGTACTTGTAACGCCGGTGCCACCGGCA
TGGAGCGAAGACAGCAGCAGCAGCATTGGCGTGCGTTTGGAAGACAGTCA
TGGGCCGGACCCCACCCACGGCGTGAAGGAGGTCTGGGGGAAGGACGAGG
ATGGGAAGGAGGACGGGGGGTACGACTACACCAAGACGACAACAGAGGTG
TACGGCGTGAGGCAGATGGAGTTCTTCGGCCCATACGCAGGGACCAGGCA
GGGGCTGGACTACGGGTTCCATCGAAACTACCGGCGGCAGAGGCAGGAGG
TTCAAGACGGGATTATTAGGAGGGCCCTGGAGGGCGGGGCAGAGAGGAGG
AGGAGGGAGTGGGGGAGGGAGGGGTCGTCGTTGGAGGACTTGTCAACCGG
CGATGACGGGCAGCAGCAGCTGCAGCAGCAGCAGCAGAAGAAGGACGACG
ACGAAAATTTCTCCTCCCTCGCCCACGTCCAACGCGCCGAGCCCCACGAG
ATCGGCCCGGACTGCCGCCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCTT
CTCCTCCCTCTCCTCCTCCTCCTCCTCCCACCACTCCACCCCCCAGCAGT
GGGTGGTGTTCACGGCTGGGCCCATGGGGGCGGGAAAAAGCCACACCCTC
AAGTGGCTGGCCAAGAGGGGTTTCTTCCCGTTGGATGACTTTGTGCTCGC
CGACCCGGATGTAATTCGAAACGAGCTCCCGGAGATAGAGGGCTATATAG
AGAGGAATCCATTAATGGCGGGTCAGCTGACGCATAAGGAGGCGGGTTAT
GTGCTGGAGATTTTGATTAGGGAGGGGCTGAAGGAAGGGAGGAATGTGCT
GGTGCAGGGGAGCCTCAGAGACGCCGCATGGCATGCGCAGTATTTTCAGG
AGTTGAGAGAGTGTTTCCCAGGCCTGAGGATCGCGATAATCCACGTGACG
GCGAGCAGGGAGACGGTCCTATCAAGGGCACGGCGCCGAGGGATAGCAAC
CCGGCGGGTGGTGCCGGATGAGGTCCTTCTAGCTTCCCTGGAGGAGACTC
CGCGCGCTGTAGGTGTACTGGAGAGACAGGCAGACTACTGTGTGGCCATC
GATAACGATGGGAGGGGGGAACCGCGCCTTGTGGGAGGGTGTGGAAGGGA
GGGAGGGAGGGGGGGAAGGAGGGAGGAGGAGACGTGGACGACGTTTTCGG
GTGTGTGGCGGGGATGTGGGTTGCCGTCGAGGAGGGAGGGGGGAGGGGAG
GGAGGGAGGGAGGGGAAGGAGGAGGGGAAAGAGTAG

protein sequence of NO19G02280.1

>NO19G02280.1-protein ID=NO19G02280.1-protein|Name=NO19G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=712bp
MCGFLVPPSCIKLVRRTERRCNNLGTIALSKDCGNTHSGNYTTDGDSSSS
RSSATAAPLLHSRRTHGHSPPPPAPPRTLSFLPTLLTDVTVVGSASGSGQ
QQQQQQPSYHPHRPPPTTTPSSTPPHISNRKRGSSLVGSGNSNSNSSVGG
VFSRARTHTPSDSFFAVEEGISTSSDKIGRTSNSSNRKQTKGERREAETR
QKGGKLWGLGVLVCALGGVGLLSVGVRTRLLHSGIIIISSSSSTTTTTTT
TARSKVLERRQDTLEQQLGDAAARSGEREGEVDDGGIMNGKVLVTPVPPA
WSEDSSSSIGVRLEDSHGPDPTHGVKEVWGKDEDGKEDGGYDYTKTTTEV
YGVRQMEFFGPYAGTRQGLDYGFHRNYRRQRQEVQDGIIRRALEGGAERR
RREWGREGSSLEDLSTGDDGQQQLQQQQQKKDDDENFSSLAHVQRAEPHE
IGPDCRLSLPPSLPPSFSSLSSSSSSHHSTPQQWVVFTAGPMGAGKSHTL
KWLAKRGFFPLDDFVLADPDVIRNELPEIEGYIERNPLMAGQLTHKEAGY
VLEILIREGLKEGRNVLVQGSLRDAAWHAQYFQELRECFPGLRIAIIHVT
ASRETVLSRARRRGIATRRVVPDEVLLASLEETPRAVGVLERQADYCVAI
DNDGRGEPRLVGGCGREGGRGGRREEETWTTFSGVWRGCGLPSRREGGGE
GGREGKEEGKE*

mRNA from alignment at chr19:653410..656175-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO19G02280.1 ID=NO19G02280.1|Name=NO19G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2766bp|location=Sequence derived from alignment at chr19:653410..656175- (Nannochloropsis oceanica)
ATGTGCGGGGTGAGAACTGGATGAGGACTTGATGGATGATGAGAGAGGAG
GTCGTGGCTTGCGGCAACGGAAGCAAGCGAGCTGCTCTTGCTGTCGATCC
TTTTGTCCCATACAAAACCTCCACACACATTCTACAGCTTCACCGACAAG
TTCCTTGTTCCACCGAGCTGCATAAAGCTAGTCGTAAGTCAGGTCACACC
CGCGTCACAAAAAGACTCGCGGTCGCAGACAACCAGAGCCCAAGTAGATC
TACCTGCCCGACGGCGCAACTGGTCCTCTTTCTGACGCCTCTTTACGCAC
TCCCACCCACAACAACACATAGAGAAGGACAGAAAGGAGGTGTAACAACC
TTGGAACCATTGCGCTCTCCAAGGACTGCGGCAACACCCATAGTGGCAAC
TACACAACAGACGGCGACAGCAGCAGCAGCCGCAGCAGTGCCACCGCCGC
ACCTCTTCTTCACTCCCGTCGCACCCACGGGCACTCCCCTCCTCCCCCAG
CCCCTCCCCGGACGTTGTCATTCCTTCCTACTCTTCTTACAGACGTGACG
GTCGTAGGAAGTGCGAGTGGCAGCGGGCAGCAGCAGCAGCAGCAGCAGCC
GTCCTATCACCCTCACAGGCCGCCGCCGACGACGACGCCCAGCAGTACAC
CTCCGCACATCTCAAACCGCAAGAGAGGCTCTTCCTTAGTCGGGAGTGGC
AACAGCAACAGCAACAGCAGCGTTGGAGGTGTATTTTCCCGAGCCCGGAC
ACACACACCCTCCGACTCATTTTTTGCCGTCGAAGAGGGGATAAGCACCA
GCAGCGATAAGATAGGTCGTACCAGCAACAGTAGCAACAGGAAACAGACA
AAAGGAGAACGAAGGGAAGCTGAGACTAGACAGAAGGGAGGCAAACTGTG
GGGTCTAGGTGTGCTGGTGTGCGCTCTAGGCGGCGTCGGCTTGTTAAGTG
TCGGCGTAAGGACACGCCTGCTGCACAGCGGGATCATCATCATCAGCAGC
AGCAGCAGCACCACCACCACCACCACCACCACCGCGAGAAGTAAGGTATT
GGAGAGACGACAAGACACGTTGGAGCAGCAGCTAGGCGACGCAGCCGCGA
GGAGTGGAGAGAGGGAGGGCGAGGTGGACGACGGGGGGATAATGAACGGT
AAAGTACTTGTAACGCCGGTGCCACCGGCATGGAGCGAAGACAGCAGCAG
CAGCATTGGCGTGCGTTTGGAAGACAGTCATGGGCCGGACCCCACCCACG
GCGTGAAGGAGGTCTGGGGGAAGGACGAGGATGGGAAGGAGGACGGGGGG
TACGACTACACCAAGACGACAACAGAGGTGTACGGCGTGAGGCAGATGGA
GTTCTTCGGCCCATACGCAGGGACCAGGCAGGGGCTGGACTACGGGTTCC
ATCGAAACTACCGGCGGCAGAGGCAGGAGGTTCAAGACGGGATTATTAGG
AGGGCCCTGGAGGGCGGGGCAGAGAGGAGGAGGAGGGAGTGGGGGAGGGA
GGGGTCGTCGTTGGAGGACTTGTCAACCGGCGATGACGGGCAGCAGCAGC
TGCAGCAGCAGCAGCAGAAGAAGGACGACGACGAAAATTTCTCCTCCCTC
GCCCACGTCCAACGCGCCGAGCCCCACGAGATCGGCCCGGACTGCCGCCT
CTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTCCTCCCTCTCCTCCTCCT
CCTCCTCCCACCACTCCACCCCCCAGCAGTGGGTGGTGTTCACGGCTGGG
CCCATGGGGGCGGGAAAAAGCCACACCCTCAAGTGGCTGGCCAAGAGGGG
TTTCTTCCCGTTGGATGACTTTGTGCTCGCCGACCCGGATGTAATTCGAA
ACGAGCTCCCGGAGATAGAGGGCTATATAGAGAGGAATCCATTAATGGCG
GGTCAGCTGACGCATAAGGAGGCGGGTTATGTGCTGGAGATTTTGATTAG
GGAGGGGCTGAAGGAAGGGAGGAATGTGCTGGTGCAGGGGAGCCTCAGAG
ACGCCGCATGGCATGCGCAGTATTTTCAGGTAGGAGGGAGGGCAAGAGAG
AGAGGGAGAGAGAGGGGGGTTGGAGTAAGGGTCAAAGAAGAGGCAAGTAG
GTGGGACGACGAGAGTGCTGACGATGATTTCCCCCTCTTCTCCCTTCCTC
CCTCTTCCCCTTCCCAACCCACCCCCTCCCTCCCTCCCGCAACAGGAGTT
GAGAGAGTGTTTCCCAGGCCTGAGGATCGCGATAATCCACGTGACGGCGA
GCAGGGAGACGGTCCTATCAAGGTTAGGAGGGAGGGAGGGAGGGAGGGAG
GGGCAGAAGAACGAGGATGAATAAGAGTCAGGACTCGTATATAAATATAT
AGCAAGAGGAGGGGACGAGGCGTCACGAGTCGTTTCTCTTCTAGAAGCTA
ACGGTTGGATTGGCCTTCCTTCCCCCTCTTTCCCTCCCTCTCTCTCTCCC
TCCCAGGGCACGGCGCCGAGGGATAGCAACCCGGCGGGTGGTGCCGGATG
AGGTCCTTCTAGCTTCCCTGGAGGAGACTCCGCGCGCTGTAGGTGTACTG
GAGAGACAGGCAGACTACTGTGTGGCCATCGATAACGATGGGAGGGGGGA
ACCGCGCCTTGTGGGAGGGTGTGGAAGGGAGGGAGGGAGGGGGGGAAGGA
GGGAGGAGGAGACGTGGACGACGTTTTCGGGTGTGTGGCGGGGATGTGGG
TTGCCGTCGAGGAGGGAGGGGGGAGGGGAGGGAGGGAGGGAGGGGAAGGA
GGAGGGGAAAGAGTAG

Coding sequence (CDS) from alignment at chr19:653410..656175-

>NO19G02280.1 ID=NO19G02280.1|Name=NO19G02280.1|organism=Nannochloropsis oceanica|type=CDS|length=2136bp|location=Sequence derived from alignment at chr19:653410..656175- (Nannochloropsis oceanica)
ATGTGCGGGTTCCTTGTTCCACCGAGCTGCATAAAGCTAGTCAGAAGGAC
AGAAAGGAGGTGTAACAACCTTGGAACCATTGCGCTCTCCAAGGACTGCG
GCAACACCCATAGTGGCAACTACACAACAGACGGCGACAGCAGCAGCAGC
CGCAGCAGTGCCACCGCCGCACCTCTTCTTCACTCCCGTCGCACCCACGG
GCACTCCCCTCCTCCCCCAGCCCCTCCCCGGACGTTGTCATTCCTTCCTA
CTCTTCTTACAGACGTGACGGTCGTAGGAAGTGCGAGTGGCAGCGGGCAG
CAGCAGCAGCAGCAGCAGCCGTCCTATCACCCTCACAGGCCGCCGCCGAC
GACGACGCCCAGCAGTACACCTCCGCACATCTCAAACCGCAAGAGAGGCT
CTTCCTTAGTCGGGAGTGGCAACAGCAACAGCAACAGCAGCGTTGGAGGT
GTATTTTCCCGAGCCCGGACACACACACCCTCCGACTCATTTTTTGCCGT
CGAAGAGGGGATAAGCACCAGCAGCGATAAGATAGGTCGTACCAGCAACA
GTAGCAACAGGAAACAGACAAAAGGAGAACGAAGGGAAGCTGAGACTAGA
CAGAAGGGAGGCAAACTGTGGGGTCTAGGTGTGCTGGTGTGCGCTCTAGG
CGGCGTCGGCTTGTTAAGTGTCGGCGTAAGGACACGCCTGCTGCACAGCG
GGATCATCATCATCAGCAGCAGCAGCAGCACCACCACCACCACCACCACC
ACCGCGAGAAGTAAGGTATTGGAGAGACGACAAGACACGTTGGAGCAGCA
GCTAGGCGACGCAGCCGCGAGGAGTGGAGAGAGGGAGGGCGAGGTGGACG
ACGGGGGGATAATGAACGGTAAAGTACTTGTAACGCCGGTGCCACCGGCA
TGGAGCGAAGACAGCAGCAGCAGCATTGGCGTGCGTTTGGAAGACAGTCA
TGGGCCGGACCCCACCCACGGCGTGAAGGAGGTCTGGGGGAAGGACGAGG
ATGGGAAGGAGGACGGGGGGTACGACTACACCAAGACGACAACAGAGGTG
TACGGCGTGAGGCAGATGGAGTTCTTCGGCCCATACGCAGGGACCAGGCA
GGGGCTGGACTACGGGTTCCATCGAAACTACCGGCGGCAGAGGCAGGAGG
TTCAAGACGGGATTATTAGGAGGGCCCTGGAGGGCGGGGCAGAGAGGAGG
AGGAGGGAGTGGGGGAGGGAGGGGTCGTCGTTGGAGGACTTGTCAACCGG
CGATGACGGGCAGCAGCAGCTGCAGCAGCAGCAGCAGAAGAAGGACGACG
ACGAAAATTTCTCCTCCCTCGCCCACGTCCAACGCGCCGAGCCCCACGAG
ATCGGCCCGGACTGCCGCCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCTT
CTCCTCCCTCTCCTCCTCCTCCTCCTCCCACCACTCCACCCCCCAGCAGT
GGGTGGTGTTCACGGCTGGGCCCATGGGGGCGGGAAAAAGCCACACCCTC
AAGTGGCTGGCCAAGAGGGGTTTCTTCCCGTTGGATGACTTTGTGCTCGC
CGACCCGGATGTAATTCGAAACGAGCTCCCGGAGATAGAGGGCTATATAG
AGAGGAATCCATTAATGGCGGGTCAGCTGACGCATAAGGAGGCGGGTTAT
GTGCTGGAGATTTTGATTAGGGAGGGGCTGAAGGAAGGGAGGAATGTGCT
GGTGCAGGGGAGCCTCAGAGACGCCGCATGGCATGCGCAGTATTTTCAGG
AGTTGAGAGAGTGTTTCCCAGGCCTGAGGATCGCGATAATCCACGTGACG
GCGAGCAGGGAGACGGTCCTATCAAGGGCACGGCGCCGAGGGATAGCAAC
CCGGCGGGTGGTGCCGGATGAGGTCCTTCTAGCTTCCCTGGAGGAGACTC
CGCGCGCTGTAGGTGTACTGGAGAGACAGGCAGACTACTGTGTGGCCATC
GATAACGATGGGAGGGGGGAACCGCGCCTTGTGGGAGGGTGTGGAAGGGA
GGGAGGGAGGGGGGGAAGGAGGGAGGAGGAGACGTGGACGACGTTTTCGG
GTGTGTGGCGGGGATGTGGGTTGCCGTCGAGGAGGGAGGGGGGAGGGGAG
GGAGGGAGGGAGGGGAAGGAGGAGGGGAAAGAGTAG

Synonyms

Publications