NO19G02230.1, NO19G02230.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G02230.1
Unique Name	NO19G02230.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1671
Alignment location	chr19:637041..638711 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:637041..638711 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO19G02230.1 vs.

BLAST of NO19G02230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO19G02230	NO19G02230	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02230.1	NO19G02230.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO19G02230.1.cds1	NO19G02230.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr19:637041..638711-
coding sequence from alignment at chr19:637041..638711-

mRNA sequence

>NO19G02230.1 ID=NO19G02230.1|Name=NO19G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp
GGGAGAGAGGGAGGGAGGGAGGGACAAGGTTGATGTTGGTGTGGTCTCTT
TGGCGACATCTTTGTGGAGAGGGAGGGATGGGGGGAGGGGGATGCAGGCA
GCAGCAGTAGCTGGAACAGCAGCAGCAGCAGCGGCAGTAGCAGCAGCCGC
AGCCGAGAGGATGGTGAGTGAGTTGGTGACTCTATCTTCTGGTAAATGGG
GCGGAGGGATGGAAGGAGGGAGAGGGAAAGGAGGAGGAGCAGCAGTTGCA
GCAGCAACTGCGATATCGCTGAGCAGAGAGGAGTGGGAGATGTTCAGTGG
CAGCAGTAGCAGCAGCAACAGCAGAGGAAGAGGAAGAGGAGGAGGAGAGG
AAAGTGAGGAAGCAGCGTCTGTAGCAGCAGTAGCAGCAGCAGTAACAGCA
GCAGTAGGAGCAGCAGCAGCAGCAGTGTGTGGCGCCATCGACAGGACTCG
CGCCATAATGGGCTCCAGTACTCTACAAGAGGCCGCGGACGGGTGGAGGG
AGGGAGGGAGGGAGGTGGAGGCGTATGTCAATTGTGTGTGGAGGGCCCAG
GGGGGCCAATGGAAGAAGATGAAAGAGTGGAGCAAGAAGGCGGAAGGGAT
GAACGAGGACTGGAGGAGGGACTACGCCAAAGCGAGAAATATCACCTTGA
CGGAAAGGGAGGAGTTTATGAGAGAAAACAACGGGACCGACCCCTGGTTG
CAGGGGAAGCAGAAGTTCGACCTTGAGTTGTGGCAAGTGCTTCGGACGCT
CACGGGCTACAACAATCCCCGCTTCTAGCCTTTCCTCCTGCCCCCCCTCT
TTCGTGTCCTACCTCCCTCCCACCTTCCGCATCAAAAGACAATAGATGGC
TCTAGTCTCTCCCGTGCTCCCTCCCTTATTAAGGTCGACTCAGCAGGGCA
CGGGGGGGGTAAACGAGGTCGACTCAGCTGGGCATGAGGGGAAATACTAG
TGAACAGAGATAAAGGGGTAGAATTCGAGAGGATTCAGACGCGAAGGGAC
GATTAAGGAGCTTAGGGTTTTGAGGTAAGACTTTCACAAAGAAAGAAAGC
AGCGGCAGTGTGCACGGAAACACAAAAGATATGTACAGGGAAGGAAGAAA
AGTTTAGATTATTAGATATAAGATTGACTTTGGCCTCAAGCGCGTGCATT
TAAGTTACTTGAAATTAGGAACAACGAACAATGAAAAATGAGAGAGCTTG
CCTCACGCCGATAGAGCTTGCCTCACGCCGAGAGAGCTTCGGGTACTCCA
TCCTTTGGGTGATCGTTTCGTTGCTGTTCTGTGCTTTGTGTCTGGGGTGT
TGAGGGAAATGGGAGTGCGCGTAATGGGAGAAAGGTAGGCAGACGATTGC
CTAGACCAGCTTCTAGGGAGATGTAGGAACGGCAAAAAGAACTAGACCAA
CTTCTCAATGGGCAAAAAAGGCCCAAAGGCCGCGATGCTGAGATTTCAAG
CTGTAGCGGCAATTTTCGGCTTTCCCTTTTCTTGTTCACTCCCAGAGGGC
GGCAATAGGATAATACGATCCATTCCAAAAAACTGTCCTATTACCTCCAA
AGTCTTTCCTCCTAACACCACCTTTATCACGCAATTTGTCATGCAATGCT
GCGATATTCGGTGCATCAAAATGCGCTTATGCCCCATCTATATCTCAGGT
AAGCGAACAATCGCCGATAGG

protein sequence of NO19G02230.1

>NO19G02230.1-protein ID=NO19G02230.1-protein|Name=NO19G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MQAAAVAGTAAAAAAVAAAAAERMVSELVTLSSGKWGGGMEGGRGKGGGA
AVAAATAISLSREEWEMFSGSSSSSNSRGRGRGGGEESEEAASVAAVAAA
VTAAVGAAAAAVCGAIDRTRAIMGSSTLQEAADGWREGGREVEAYVNCVW
RAQGGQWKKMKEWSKKAEGMNEDWRRDYAKARNITLTEREEFMRENNGTD
PWLQGKQKFDLELWQVLRTLTGYNNPRF*

mRNA from alignment at chr19:637041..638711-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO19G02230.1 ID=NO19G02230.1|Name=NO19G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp|location=Sequence derived from alignment at chr19:637041..638711- (Nannochloropsis oceanica)
GGGAGAGAGGGAGGGAGGGAGGGACAAGGTTGATGTTGGTGTGGTCTCTT
TGGCGACATCTTTGTGGAGAGGGAGGGATGGGGGGAGGGGGATGCAGGCA
GCAGCAGTAGCTGGAACAGCAGCAGCAGCAGCGGCAGTAGCAGCAGCCGC
AGCCGAGAGGATGGTGAGTGAGTTGGTGACTCTATCTTCTGGTAAATGGG
GCGGAGGGATGGAAGGAGGGAGAGGGAAAGGAGGAGGAGCAGCAGTTGCA
GCAGCAACTGCGATATCGCTGAGCAGAGAGGAGTGGGAGATGTTCAGTGG
CAGCAGTAGCAGCAGCAACAGCAGAGGAAGAGGAAGAGGAGGAGGAGAGG
AAAGTGAGGAAGCAGCGTCTGTAGCAGCAGTAGCAGCAGCAGTAACAGCA
GCAGTAGGAGCAGCAGCAGCAGCAGTGTGTGGCGCCATCGACAGGACTCG
CGCCATAATGGGCTCCAGTACTCTACAAGAGGCCGCGGACGGGTGGAGGG
AGGGAGGGAGGGAGGTGGAGGCGTATGTCAATTGTGTGTGGAGGGCCCAG
GGGGGCCAATGGAAGAAGATGAAAGAGTGGAGCAAGAAGGCGGAAGGGAT
GAACGAGGACTGGAGGAGGGACTACGCCAAAGCGAGAAATATCACCTTGA
CGGAAAGGGAGGAGTTTATGAGAGAAAACAACGGGACCGACCCCTGGTTG
CAGGGGAAGCAGAAGTTCGACCTTGAGTTGTGGCAAGTGCTTCGGACGCT
CACGGGCTACAACAATCCCCGCTTCTAGCCTTTCCTCCTGCCCCCCCTCT
TTCGTGTCCTACCTCCCTCCCACCTTCCGCATCAAAAGACAATAGATGGC
TCTAGTCTCTCCCGTGCTCCCTCCCTTATTAAGGTCGACTCAGCAGGGCA
CGGGGGGGGTAAACGAGGTCGACTCAGCTGGGCATGAGGGGAAATACTAG
TGAACAGAGATAAAGGGGTAGAATTCGAGAGGATTCAGACGCGAAGGGAC
GATTAAGGAGCTTAGGGTTTTGAGGTAAGACTTTCACAAAGAAAGAAAGC
AGCGGCAGTGTGCACGGAAACACAAAAGATATGTACAGGGAAGGAAGAAA
AGTTTAGATTATTAGATATAAGATTGACTTTGGCCTCAAGCGCGTGCATT
TAAGTTACTTGAAATTAGGAACAACGAACAATGAAAAATGAGAGAGCTTG
CCTCACGCCGATAGAGCTTGCCTCACGCCGAGAGAGCTTCGGGTACTCCA
TCCTTTGGGTGATCGTTTCGTTGCTGTTCTGTGCTTTGTGTCTGGGGTGT
TGAGGGAAATGGGAGTGCGCGTAATGGGAGAAAGGTAGGCAGACGATTGC
CTAGACCAGCTTCTAGGGAGATGTAGGAACGGCAAAAAGAACTAGACCAA
CTTCTCAATGGGCAAAAAAGGCCCAAAGGCCGCGATGCTGAGATTTCAAG
CTGTAGCGGCAATTTTCGGCTTTCCCTTTTCTTGTTCACTCCCAGAGGGC
GGCAATAGGATAATACGATCCATTCCAAAAAACTGTCCTATTACCTCCAA
AGTCTTTCCTCCTAACACCACCTTTATCACGCAATTTGTCATGCAATGCT
GCGATATTCGGTGCATCAAAATGCGCTTATGCCCCATCTATATCTCAGGT
AAGCGAACAATCGCCGATAGG

Coding sequence (CDS) from alignment at chr19:637041..638711-

>NO19G02230.1 ID=NO19G02230.1|Name=NO19G02230.1|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at chr19:637041..638711- (Nannochloropsis oceanica)
ATGCAGGCAGCAGCAGTAGCTGGAACAGCAGCAGCAGCAGCGGCAGTAGC
AGCAGCCGCAGCCGAGAGGATGGTGAGTGAGTTGGTGACTCTATCTTCTG
GTAAATGGGGCGGAGGGATGGAAGGAGGGAGAGGGAAAGGAGGAGGAGCA
GCAGTTGCAGCAGCAACTGCGATATCGCTGAGCAGAGAGGAGTGGGAGAT
GTTCAGTGGCAGCAGTAGCAGCAGCAACAGCAGAGGAAGAGGAAGAGGAG
GAGGAGAGGAAAGTGAGGAAGCAGCGTCTGTAGCAGCAGTAGCAGCAGCA
GTAACAGCAGCAGTAGGAGCAGCAGCAGCAGCAGTGTGTGGCGCCATCGA
CAGGACTCGCGCCATAATGGGCTCCAGTACTCTACAAGAGGCCGCGGACG
GGTGGAGGGAGGGAGGGAGGGAGGTGGAGGCGTATGTCAATTGTGTGTGG
AGGGCCCAGGGGGGCCAATGGAAGAAGATGAAAGAGTGGAGCAAGAAGGC
GGAAGGGATGAACGAGGACTGGAGGAGGGACTACGCCAAAGCGAGAAATA
TCACCTTGACGGAAAGGGAGGAGTTTATGAGAGAAAACAACGGGACCGAC
CCCTGGTTGCAGGGGAAGCAGAAGTTCGACCTTGAGTTGTGGCAAGTGCT
TCGGACGCTCACGGGCTACAACAATCCCCGCTTCTAG

Synonyms

Publications