NO19G02100.1, NO19G02100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02100.1
Unique NameNO19G02100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1350
Alignment locationchr19:604414..606477 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:604414..606477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02100.1 vs.
Match: EWM23709.1 (Chlorophyll A-B binding protein [Nannochloropsis gaditana])

HSP 1 Score: 397.9 bits (1021), Expect = 2.200e-107
Identity = 203/234 (86.75%), Postives = 215/234 (91.88%), Query Frame = 0 
Query:    1 MKTAAILAVLACAANAFVFPTPKVSQTVVRGTPFDTVSKDELAVENKAMAGKSVFERAMADFNGRYPAVAALGLGPSAKAERWNGRHAMFGWIVLLATGYAQAHGLLPEGGMDAKEWGTWVIVST--TNGEQVTIPAARAAIAIGHLHFGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKEAEMLNGRVAMLGLVALVAVSAATGQDILSVIDQGLGGLLLKA 233
            MKTAAI ++LA AANAFV PTPK  QTVV+GTPFDTV K E+AVENKA++G SVFERAMADFNGRYPAVAALGLGPS KAERWNGRHAMFGWI LLATGYAQAHGLLPEGGMDAKEWGTWVIV+T    G   TIPAARAAIAI HLH GAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTK+AE+LNGR+AMLGL+ALVAV+AATGQDILSVIDQGLGGLLLKA
Sbjct:   56 MKTAAIFSLLAVAANAFVLPTPKAPQTVVKGTPFDTVDKAEMAVENKALSGMSVFERAMADFNGRYPAVAALGLGPSVKAERWNGRHAMFGWIALLATGYAQAHGLLPEGGMDAKEWGTWVIVNTDPATGAVTTIPAARAAIAIAHLHLGAVGVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKDAEILNGRIAMLGLIALVAVAAATGQDILSVIDQGLGGLLLKA 289
The following BLAST results are available for this feature:
BLAST of NO19G02100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23709.12.200e-10786.75Chlorophyll A-B binding protein [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02100NO19G02100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02100.1NO19G02100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02100.1.cds1NO19G02100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02100.1.cds2NO19G02100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02100.1.cds3NO19G02100.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02100.1.cds4NO19G02100.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02100.1 ID=NO19G02100.1|Name=NO19G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp
CCCGTTAAAGGCGACGTCGGCTGCGTTTTCTATACTCACCCACACACATA
CAGTACTATTCCTTCCTCGCTCCAACCCTTAGCAACGTGGGGTAGCGCTG
GGCTTCAGCATCGTATGGTCTGTTGCGGCGGTGGTCCAACGCAAACTCCG
CCCTGCTTTTCCACCATGCGCGACGCACGGTCTTCGACATTTCCACAGCA
AGCAGGCCCCACCATCCCTGTACGCCGCCCTGCATTTGCTGATCTTTTCA
CCGCACTCGTTTTGAACACACACAGGACCTCTTCCCTACCATAATAACTA
TGAAGACCGCCGCGATTTTGGCGGTTCTGGCTTGCGCCGCCAACGCCTTC
GTCTTCCCCACGCCCAAGGTCTCCCAGACCGTCGTCAGAGGCACACCCTT
CGACACGGTCAGCAAGGATGAGCTCGCGGTCGAGAACAAGGCCATGGCGG
GAAAGAGTGTCTTTGAGCGTGCCATGGCAGATTTCAATGGCCGATATCCT
GCGGTCGCTGCGTTGGGGTTGGGCCCCAGCGCCAAGGCGGAGCGATGGAA
TGGACGCCATGCCATGTTTGGCTGGATCGTGCTGCTGGCCACGGGGTATG
CGCAGGCGCACGGGCTTCTGCCCGAAGGAGGCATGGATGCCAAGGAGTGG
GGCACGTGGGTCATCGTCAGTACGACTAATGGGGAACAGGTCACGATCCC
CGCTGCCCGTGCTGCTATTGCCATTGGACACCTGCACTTCGGCGCAGTTG
GCGTGTTTGCCGCTTACAGCAAGAACAGCGTCAAGGACAGGCTTCTGTTG
GAGCCGGGGGAGAAGGATGAGGCGCCCGCTGGCTTGTTCCCTGCCCTTCG
CCCGGGCTTGACCAAGGAAGCCGAGATGCTCAACGGTCGCGTGGCCATGC
TCGGCCTCGTGGCCCTCGTTGCCGTTTCCGCCGCCACGGGCCAGGACATC
CTCTCGGTCATTGACCAGGGCCTCGGTGGCCTGCTCCTCAAGGCGTAATT
CACTCTATACAATTTCAGAAGTGATCAGTACAACAATGAGTGGACTAGTA
TTTGTGAGTGTCAGTGTCTTTCTCCAGTCCCTTGCCCCTCTAATCATAAT
CGGTCCTTTTATTGGGCTTGTCAAGGCATTGAGTTGGATCGGGCGGGCAA
GGTGCCTCTTGTTGCTTGCCTTGTCTTGGCCCCTTTCCTTACCCTCCAGA
GCAGTAGCAGCGTCCTTAATTTCTTCCGTCGAATTTAGACGGCGATTTAG
TCTGCAGGAGAAAGAAATAAAATGAAAGATCGATCGATAGGAGAGTACGC
AAACATCAAACGAGTAAAGTGAAAGGCTACACAGAGCACGTACACTACTT
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protein sequence of NO19G02100.1

>NO19G02100.1-protein ID=NO19G02100.1-protein|Name=NO19G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MKTAAILAVLACAANAFVFPTPKVSQTVVRGTPFDTVSKDELAVENKAMA
GKSVFERAMADFNGRYPAVAALGLGPSAKAERWNGRHAMFGWIVLLATGY
AQAHGLLPEGGMDAKEWGTWVIVSTTNGEQVTIPAARAAIAIGHLHFGAV
GVFAAYSKNSVKDRLLLEPGEKDEAPAGLFPALRPGLTKEAEMLNGRVAM
LGLVALVAVSAATGQDILSVIDQGLGGLLLKA*
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mRNA from alignment at chr19:604414..606477-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02100.1 ID=NO19G02100.1|Name=NO19G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2064bp|location=Sequence derived from alignment at chr19:604414..606477- (Nannochloropsis oceanica)
CCCGTTAAAGGCGACGTCGGCTGCGTTTTCTATACTCACCCACACACATA
CAGTACTATTCCTTCCTCGCTCCAACCCTTAGCAACGTGGGGTAGCGCTG
GGCTTCAGCATCGTATGGTCTGTTGCGGCGGTGGTCCAACGCAAACTCCG
CCCTGCTTTTCCACCATGCGCGACGCACGGTCTTCGACATTTCCACAGCA
AGCAGGCCCCACCATCCCTGTACGCCGCCCTGCATTTGCTGATCTTTTCA
CCGCACTCGTTTTGAACACACACAGGACCTCTTCCCTACCATAATAACTA
TGAAGACCGCCGCGATTTTGGCGGTTCTGGCTTGCGCCGCCAACGCCTTC
GTCTTCCCCACGCCCAAGGTCTCCCAGGTAAGGATTGGGAGAGAGGGAAA
GAAGGACCGAAGAAGTGTATTTGAGTCAGTTTCCTTGAGCAAACATGTCA
ATAAGAGGCCGGCACTATTCTTTTCAGTGTCTCTTCATACGGGCCCCTGT
CCAATGTTTTGAATGGTACGTAGACAAACCTTGCTTTGATCTGAGAGCAA
GGTACCATTCTCATTGCCATTTTTGACTGCGACATGAACTGCTTGTGCAT
GTTTGAATAGTCGAGGTCTTCCTTATGCACGAGTGCAGAATTTTAAATGT
GTATCTCACCGCGATCCCTCGCTCCTCTCCTTCCCCACATTTACTAAACA
CACAGACCGTCGTCAGAGGCACACCCTTCGACACGGTCAGCAAGGATGAG
CTCGCGGTCGAGAACAAGGCCATGGCGGGAAAGAGTGTCTTTGAGCGTGC
CATGGCAGATTTCAATGGCCGATATCCTGCGGTCGCTGCGTTGGGGTTGG
GCCCCAGCGCCAAGGCGGAGCGATGGAATGGACGCCATGCCATGTTTGGC
TGGATCGTGCTGCTGGCCACGGGGTATGCGCAGGCGCACGGGCTTCTGCC
CGAAGGAGGCATGGATGCCAAGGAGTGGGGCACGGTGAGCTTCATTATAG
GGGGAGAATGAGGTGATAGTGTTTGCTTTCTGGTGTGCGAGGGTTTTGCT
GCTGATTGCCGTAGGGGGGGTATCACACTCCTCCCCAACGCAAGGCACTC
GTATAGTAAACACATCAGAATTAGTAACTGGATCGTCCTTCATGACTAAA
TCATCATTTGTACCATACATACAACCACCTCAACTAAAACTAGTGGGTCA
TCGTCAGTACGACTAATGGGGAACAGGTCACGATCCCCGCTGCCCGTGCT
GCTATTGCCATTGGACACCTGCACTTCGGCGCAGTTGGCGTGTTTGCCGC
TTACAGCAAGAACAGCGTCAAGGACAGGCTTCTGTTGGAGCCGGGGGAGA
AGGATGAGGCGCCCGCTGGCTTGTTCCCTGCCCTTCGCCCGGGCTTGACC
AAGGAAGCCGAGATGCTCAACGGTGAGTAAACGACTAGCTGCATGCATCA
GTTATGTCAATGGAAAGATGGCAACCTGTCGGGGGAAAGACGAAGAGTCA
AACACACTTAAGGCACCTGAAACGTACTCATTCATTTCAAGGCACCTGGA
ACGTACTCATTCATGTCCCCGTTCTTGCTCCCTCTCTCCCGTTCCCCAGG
TCGCGTGGCCATGCTCGGCCTCGTGGCCCTCGTTGCCGTTTCCGCCGCCA
CGGGCCAGGACATCCTCTCGGTCATTGACCAGGGCCTCGGTGGCCTGCTC
CTCAAGGCGTAATTCACTCTATACAATTTCAGAAGTGATCAGTACAACAA
TGAGTGGACTAGTATTTGTGAGTGTCAGTGTCTTTCTCCAGTCCCTTGCC
CCTCTAATCATAATCGGTCCTTTTATTGGGCTTGTCAAGGCATTGAGTTG
GATCGGGCGGGCAAGGTGCCTCTTGTTGCTTGCCTTGTCTTGGCCCCTTT
CCTTACCCTCCAGAGCAGTAGCAGCGTCCTTAATTTCTTCCGTCGAATTT
AGACGGCGATTTAGTCTGCAGGAGAAAGAAATAAAATGAAAGATCGATCG
ATAGGAGAGTACGCAAACATCAAACGAGTAAAGTGAAAGGCTACACAGAG
CACGTACACTACTT
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Coding sequence (CDS) from alignment at chr19:604414..606477-

>NO19G02100.1 ID=NO19G02100.1|Name=NO19G02100.1|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at chr19:604414..606477- (Nannochloropsis oceanica)
ATGAAGACCGCCGCGATTTTGGCGGTTCTGGCTTGCGCCGCCAACGCCTT
CGTCTTCCCCACGCCCAAGGTCTCCCAGACCGTCGTCAGAGGCACACCCT
TCGACACGGTCAGCAAGGATGAGCTCGCGGTCGAGAACAAGGCCATGGCG
GGAAAGAGTGTCTTTGAGCGTGCCATGGCAGATTTCAATGGCCGATATCC
TGCGGTCGCTGCGTTGGGGTTGGGCCCCAGCGCCAAGGCGGAGCGATGGA
ATGGACGCCATGCCATGTTTGGCTGGATCGTGCTGCTGGCCACGGGGTAT
GCGCAGGCGCACGGGCTTCTGCCCGAAGGAGGCATGGATGCCAAGGAGTG
GGGCACGTGGGTCATCGTCAGTACGACTAATGGGGAACAGGTCACGATCC
CCGCTGCCCGTGCTGCTATTGCCATTGGACACCTGCACTTCGGCGCAGTT
GGCGTGTTTGCCGCTTACAGCAAGAACAGCGTCAAGGACAGGCTTCTGTT
GGAGCCGGGGGAGAAGGATGAGGCGCCCGCTGGCTTGTTCCCTGCCCTTC
GCCCGGGCTTGACCAAGGAAGCCGAGATGCTCAACGGTCGCGTGGCCATG
CTCGGCCTCGTGGCCCTCGTTGCCGTTTCCGCCGCCACGGGCCAGGACAT
CCTCTCGGTCATTGACCAGGGCCTCGGTGGCCTGCTCCTCAAGGCGTAA
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Synonyms
Publications