NO19G02020.2, NO19G02020.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G02020.2
Unique NameNO19G02020.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2692
Alignment locationchr19:590541..593394 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:590541..593394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G02020.2 vs.
Match: EWM23671.1 (trna (guanine-n -)-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 604.4 bits (1557), Expect = 3.300e-169
Identity = 308/472 (65.25%), Postives = 367/472 (77.75%), Query Frame = 0 
Query:   25 EEFTLDRAAFTRTLRVVALRLPTKLCNAAVKQLQNHVLRLRHVKAILKSDDGNDERRVVLLATEVEEGKTGDDITLADLPAPVKAFVEAAKEEQASDPIISSSPS-SPISLTIHQVIMDYNCFTVEEVLKQFFAPLQMEAPTSFETIDHVAHINLRDAYLPYKRLIAQVILDKNSPRIRTVVNKTGNIETRFRTFPLEVLAGENNLEVSVRESGATFHFNYAEVYWNSRLSTEHGRLIHSITKQFQARHPRSPLAACVVWDVFAGVGPFAVPLGVKGCVVHANDLNPRSHHYLLANINKNKVDCHVTPYNEDGRVFLRERARRRLPVHHVIMNLPASALEFLDEFSAQREREEEGKEGQEEEEEEAEGLFDYLEERPYVHVHCFSKADDPTTEALAHASDALGCELLNGKNGVSVHRVRDVAPKKEMLCISFPLPRYSELRRGGGGGKRGTKRTLDEEGKGDSKAVVQSNAK 496
            EE +LD +AF RT RV ALRLP K CN+AVKQLQ H+LRLRHVK I+K +DG D  R++LLATEV E      + L DLP  VK FV A   ++   P   + P  S +SLT HQV +DY  F+ EEVL+Q FAPL++EAPTSFET+DHVAH+NLRDA+LPYKRLIAQVILDKN+PRIRTVVNK G+I+T++RTFPLEVLAGE++L VSVRE+GATF FN+AEVYWNSRLSTEH RL++++   F A  PR PLA+CVVWDVFAGVGPFA+PLG++GCVVHANDLNPRSHHYL+ NI +NKV  +VTPYN DGR FLRERAR+  PV H+IMNLPA+ALEFLD F+A+RE      E   EEE  + GLFDYLE RP VH +CFSKA+DPT EALA AS  LGC L+NGKNGVSVHRVRDVAPKKEMLC+SFPLPR+ E        KR  +   ++EG+ D+  +VQ  +K
Sbjct:   24 EEVSLDPSAFRRTFRVAALRLPAKYCNSAVKQLQPHLLRLRHVKGIVKPEDGGDTHRLLLLATEVNEQHEDTAVELTDLPDDVKTFVHATNAQEDPTPAAEAEPPCSRVSLTTHQVHLDYASFSAEEVLRQVFAPLRLEAPTSFETVDHVAHLNLRDAHLPYKRLIAQVILDKNAPRIRTVVNKLGSIQTQYRTFPLEVLAGESDLNVSVREAGATFRFNFAEVYWNSRLSTEHARLVNAVVAHFHASRPRVPLASCVVWDVFAGVGPFAIPLGLRGCVVHANDLNPRSHHYLVDNIARNKVGAYVTPYNRDGRDFLRERARQHQPVDHIIMNLPATALEFLDTFAAERE------ETAGEEEGRSRGLFDYLEARPIVHAYCFSKAEDPTAEALARASAILGCVLVNGKNGVSVHRVRDVAPKKEMLCLSFPLPRHCEF---NFSRKRAMESEREKEGREDTVDMVQKRSK 486
The following BLAST results are available for this feature:
BLAST of NO19G02020.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23671.13.300e-16965.25trna (guanine-n -)-methyltransferase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02020NO19G02020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G02020.2NO19G02020.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G02020.2.cds1NO19G02020.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G02020.2.cds2NO19G02020.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G02020.2 ID=NO19G02020.2|Name=NO19G02020.2|organism=Nannochloropsis oceanica|type=mRNA|length=2692bp
GACTTTACTTGCGAAGTGCGCTGTGTTTCGTGTGGAAGAATGGACCGGGA
CATATCTGAGGATACATCAACAAGGAATATTGAGACCTGATGACAGGCTT
GTCCTAAAGGAGATAGCTGTTCAAGGACAGCGACAAAGACAGATGAGTAG
AAGGGGCAATCACATCGACCGGTAAGCAAACAAGAAAACCACGTGCAATA
GAGAACATCTGTGCGGCGAATGTGCTTATTGAGGTAACGTCAAGTTATGG
CGACATCCTCTTCGGACGCTGCTAATCCCACCACCCTGAGCACAGAAAAA
TAGCTGTTTAGATAAGATACCTTGCCCGAAAGACGGTCCTCATCTCAAGC
TATAACCTACTCGTTTATCGCTTTTGACTTTGACGAGGGCACAACGCACA
ACACAGAACAACCACAACCTCTCAGAATCTTGGAATTATGTGGACCCACA
TACACACCATCATTGTCGGGCGGGGAGATTGAGAAGTCCATCCAGTGATT
GATTGAGATAGGCCATGACAAGACATATTTAGGTGAATAGTACCCGCTAG
AAAGGTGTTAATGCCAGCATCGGTGAGATTACAGAGTGCCAGCATTTTGG
TTTTTGAGGTTCAACAAGTTGTTCGCGGGGGCTCCCCGAAATGGTCTTGT
GACTTTCAGTCGAATATCATGCTAAAGGTGAGGGTTTGTGGGGGGGCGGA
TCGTTGGAGGACGGATATTAAAATGATCTTAAAATGGTTACATTCAGGTA
CCTGCATATTCATTGGAAACAGAAGACCATAAAAGACGTTGGTCAAAGGC
CCGCGGCCTGCTCCTCTGTGTATTCTTCTGCCGAAGAACACCGCTCGGTG
GTCGTCAAAATGCCAAAGTGAACATGCACTCATATCACACCCATTTGCCC
TGTTTACCCCTTGGACAACCCCTTAAAAAGATCCTGTGGGGGAGCGACAT
TTGGCGGCCAAAAACAGTGCGTGGGGGTGACTGAGAACCACAGAATCAGT
TCAGGGATCCCCGAACAGGAGGTTAGGTTTGCCTTGCCCTTCATTCTTCA
CACTGTCATGTCCACTCTCCTTCGCACCCGCAGGTATCCAAACCCACCAT
GAGCACGGGCTGCGGCAGCACGGCCCCGCCTGCGCCGAGGGACGCGGGTG
CATCGTCTACCGTGCAGCAGGAAGAATTTACGCTTGATCGCGCTGCCTTT
ACTCGTACGCTGCGGGTGGTGGCCCTGCGCCTCCCAACCAAGCTCTGCAA
CGCCGCCGTGAAACAGCTGCAGAACCACGTGCTTCGCCTCCGACACGTGA
AAGCTATTCTCAAATCTGATGATGGGAACGACGAGCGCCGCGTGGTGCTC
CTCGCTACCGAGGTCGAGGAGGGCAAAACTGGCGATGACATCACGCTGGC
CGACCTACCAGCCCCTGTCAAAGCTTTTGTGGAGGCTGCAAAGGAAGAGC
AGGCATCTGACCCCATCATTTCGTCGTCCCCGTCCTCACCAATTTCTTTG
ACCATCCACCAAGTGATCATGGACTACAACTGCTTCACTGTGGAGGAAGT
TCTCAAGCAATTCTTCGCTCCCCTGCAAATGGAAGCCCCTACCTCCTTCG
AAACCATCGACCATGTCGCGCATATCAACCTCCGCGATGCCTACCTTCCA
TACAAGCGTCTTATCGCCCAAGTCATCCTTGACAAGAACTCTCCCCGTAT
TCGTACCGTGGTAAATAAAACAGGCAACATCGAAACGCGCTTCCGGACCT
TCCCCCTCGAGGTCCTGGCTGGGGAGAACAACCTGGAGGTGTCCGTCCGA
GAGAGCGGGGCCACCTTCCACTTCAATTACGCCGAGGTTTATTGGAATAG
CCGCCTCTCCACAGAACACGGTCGTCTGATCCACTCCATCACCAAGCAGT
TTCAAGCGAGGCACCCTCGAAGCCCACTGGCGGCGTGTGTGGTCTGGGAC
GTGTTCGCGGGCGTCGGGCCATTCGCCGTCCCTCTCGGTGTGAAAGGCTG
CGTCGTCCATGCCAATGACCTGAACCCCCGCTCGCACCACTACCTTCTTG
CCAACATCAACAAGAACAAGGTGGACTGCCATGTGACCCCCTACAACGAG
GACGGCCGGGTTTTCCTCCGGGAGCGGGCACGGCGCCGTTTACCCGTGCA
TCACGTGATCATGAACCTCCCTGCGTCTGCCCTCGAGTTCCTGGACGAAT
TTTCCGCTCAGAGGGAGCGAGAGGAGGAAGGAAAGGAAGGACAAGAAGAA
GAGGAAGAAGAAGCAGAAGGGCTGTTTGATTATTTGGAGGAGCGGCCTTA
CGTACACGTGCATTGTTTTAGCAAGGCCGACGACCCGACAACGGAGGCTC
TGGCTCACGCCTCCGATGCCCTGGGGTGTGAACTCTTGAATGGCAAAAAT
GGGGTGAGTGTTCACCGAGTCAGAGACGTGGCGCCGAAGAAGGAGATGTT
GTGCATATCCTTTCCTTTGCCGCGGTACAGCGAGCTGAGGAGAGGTGGTG
GCGGTGGGAAGAGAGGAACTAAAAGGACGCTGGACGAGGAGGGAAAAGGC
GATTCTAAAGCTGTGGTCCAGAGCAATGCGAAGGAAGAATGAATCGCACA
TTTCTGATGGTGATAAAGTTTGGGGGAAGAGTGAAGCCACGATTAAAGTA
CACCACACCTGAGCAAATTTCAAGTAATTCTCGAAGACACCT
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protein sequence of NO19G02020.2

>NO19G02020.2-protein ID=NO19G02020.2-protein|Name=NO19G02020.2|organism=Nannochloropsis oceanica|type=polypeptide|length=498bp
MSTGCGSTAPPAPRDAGASSTVQQEEFTLDRAAFTRTLRVVALRLPTKLC
NAAVKQLQNHVLRLRHVKAILKSDDGNDERRVVLLATEVEEGKTGDDITL
ADLPAPVKAFVEAAKEEQASDPIISSSPSSPISLTIHQVIMDYNCFTVEE
VLKQFFAPLQMEAPTSFETIDHVAHINLRDAYLPYKRLIAQVILDKNSPR
IRTVVNKTGNIETRFRTFPLEVLAGENNLEVSVRESGATFHFNYAEVYWN
SRLSTEHGRLIHSITKQFQARHPRSPLAACVVWDVFAGVGPFAVPLGVKG
CVVHANDLNPRSHHYLLANINKNKVDCHVTPYNEDGRVFLRERARRRLPV
HHVIMNLPASALEFLDEFSAQREREEEGKEGQEEEEEEAEGLFDYLEERP
YVHVHCFSKADDPTTEALAHASDALGCELLNGKNGVSVHRVRDVAPKKEM
LCISFPLPRYSELRRGGGGGKRGTKRTLDEEGKGDSKAVVQSNAKEE*
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mRNA from alignment at chr19:590541..593394+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G02020.2 ID=NO19G02020.2|Name=NO19G02020.2|organism=Nannochloropsis oceanica|type=mRNA|length=2854bp|location=Sequence derived from alignment at chr19:590541..593394+ (Nannochloropsis oceanica)
GACTTTACTTGCGAAGTGCGCTGTGTTTCGTGTGGAAGAATGGACCGGGA
CATATCTGAGGATACATCAACAAGGAATATTGAGACCTGATGACAGGCTT
GTCCTAAAGGAGATAGCTGTTCAAGGACAGCGACAAAGACAGATGAGTAG
AAGGGGCAATCACATCGACCGGTAAGCAAACAAGAAAACCACGTGCAATA
GAGAACATCTGTGCGGCGAATGTGCTTATTGAGGTAACGTCAAGTTATGG
CGACATCCTCTTCGGACGCTGCTAATCCCACCACCCTGAGCACAGAAAAA
TAGCTGTTTAGATAAGATACCTTGCCCGAAAGACGGTCCTCATCTCAAGC
TATAACCTACTCGTTTATCGCTTTTGACTTTGACGAGGGCACAACGCACA
ACACAGAACAACCACAACCTCTCAGAATCTTGGAATTATGTGGACCCACA
TACACACCATCATTGTCGGGCGGGGAGATTGAGAAGTCCATCCAGTGATT
GATTGAGATAGGCCATGACAAGACATATTTAGGTGAATAGTACCCGCTAG
AAAGGTGTTAATGCCAGCATCGGTGAGATTACAGAGTGCCAGCATTTTGG
TTTTTGAGGTTCAACAAGTTGTTCGCGGGGGCTCCCCGAAATGGTCTTGT
GACTTTCAGTCGAATATCATGCTAAAGGTGAGGGTTTGTGGGGGGGCGGA
TCGTTGGAGGACGGATATTAAAATGATCTTAAAATGGTTACATTCAGGTA
CCTGCATATTCATTGGAAACAGAAGACCATAAAAGACGTTGGTCAAAGGC
CCGCGGCCTGCTCCTCTGTGTATTCTTCTGCCGAAGAACACCGCTCGGTG
GTCGTCAAAATGCCAAAGTGAACATGCACTCATATCACACCCATTTGCCC
TGTTTACCCCTTGGACAACCCCTTAAAAAGATCCTGTGGGGGAGCGACAT
TTGGCGGCCAAAAACAGTGCGTGGGGGTGACTGAGAACCACAGAATCAGT
TCAGGGATCCCCGAACAGGAGGTTAGGTTTGCCTTGCCCTTCATTCTTCA
CACTGTCATGTCCACTCTCCTTCGCACCCGCAGGTATCCAAACCCACCAT
GAGCACGGGCTGCGGCAGCACGGCCCCGCCTGCGCCGAGGGACGCGGGTG
CATCGTCTACCGTGCAGCAGGAAGAATTTACGCTTGATCGCGCTGCCTTT
ACTCGTACGCTGCGGGTGGTGGCCCTGCGCCTCCCAACCAAGCTCTGCAA
CGCCGCCGTGAAACAGCTGCAGAACCACGTGCTTCGCCTCCGACACGTGA
AAGCTATTCTCAAATCTGATGATGGGAACGACGAGCGCCGCGTGGTGCTC
CTCGCTACCGAGGTCGAGGAGGGCAAAACTGGCGATGACATCACGCTGGC
CGACCTACCAGCCCCTGTCAAAGCTTTTGTGGAGGCTGCAAAGGTAAGAA
CTTTCGGTGTCTACGTGATTGTCTGCAGGCAGATAGTGGTACCAAAGTGG
GACCTCCTCTTTAATTTTTTGAATTATGCCTCCTTCACTGCGTAGACCCT
TGCTCCCTCCTTCAATTTAACCCCAATTCTTCCCTTTCTCTTCCCACAAT
CTTAGGAAGAGCAGGCATCTGACCCCATCATTTCGTCGTCCCCGTCCTCA
CCAATTTCTTTGACCATCCACCAAGTGATCATGGACTACAACTGCTTCAC
TGTGGAGGAAGTTCTCAAGCAATTCTTCGCTCCCCTGCAAATGGAAGCCC
CTACCTCCTTCGAAACCATCGACCATGTCGCGCATATCAACCTCCGCGAT
GCCTACCTTCCATACAAGCGTCTTATCGCCCAAGTCATCCTTGACAAGAA
CTCTCCCCGTATTCGTACCGTGGTAAATAAAACAGGCAACATCGAAACGC
GCTTCCGGACCTTCCCCCTCGAGGTCCTGGCTGGGGAGAACAACCTGGAG
GTGTCCGTCCGAGAGAGCGGGGCCACCTTCCACTTCAATTACGCCGAGGT
TTATTGGAATAGCCGCCTCTCCACAGAACACGGTCGTCTGATCCACTCCA
TCACCAAGCAGTTTCAAGCGAGGCACCCTCGAAGCCCACTGGCGGCGTGT
GTGGTCTGGGACGTGTTCGCGGGCGTCGGGCCATTCGCCGTCCCTCTCGG
TGTGAAAGGCTGCGTCGTCCATGCCAATGACCTGAACCCCCGCTCGCACC
ACTACCTTCTTGCCAACATCAACAAGAACAAGGTGGACTGCCATGTGACC
CCCTACAACGAGGACGGCCGGGTTTTCCTCCGGGAGCGGGCACGGCGCCG
TTTACCCGTGCATCACGTGATCATGAACCTCCCTGCGTCTGCCCTCGAGT
TCCTGGACGAATTTTCCGCTCAGAGGGAGCGAGAGGAGGAAGGAAAGGAA
GGACAAGAAGAAGAGGAAGAAGAAGCAGAAGGGCTGTTTGATTATTTGGA
GGAGCGGCCTTACGTACACGTGCATTGTTTTAGCAAGGCCGACGACCCGA
CAACGGAGGCTCTGGCTCACGCCTCCGATGCCCTGGGGTGTGAACTCTTG
AATGGCAAAAATGGGGTGAGTGTTCACCGAGTCAGAGACGTGGCGCCGAA
GAAGGAGATGTTGTGCATATCCTTTCCTTTGCCGCGGTACAGCGAGCTGA
GGAGAGGTGGTGGCGGTGGGAAGAGAGGAACTAAAAGGACGCTGGACGAG
GAGGGAAAAGGCGATTCTAAAGCTGTGGTCCAGAGCAATGCGAAGGAAGA
ATGAATCGCACATTTCTGATGGTGATAAAGTTTGGGGGAAGAGTGAAGCC
ACGATTAAAGTACACCACACCTGAGCAAATTTCAAGTAATTCTCGAAGAC
ACCT
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Coding sequence (CDS) from alignment at chr19:590541..593394+

>NO19G02020.2 ID=NO19G02020.2|Name=NO19G02020.2|organism=Nannochloropsis oceanica|type=CDS|length=1494bp|location=Sequence derived from alignment at chr19:590541..593394+ (Nannochloropsis oceanica)
ATGAGCACGGGCTGCGGCAGCACGGCCCCGCCTGCGCCGAGGGACGCGGG
TGCATCGTCTACCGTGCAGCAGGAAGAATTTACGCTTGATCGCGCTGCCT
TTACTCGTACGCTGCGGGTGGTGGCCCTGCGCCTCCCAACCAAGCTCTGC
AACGCCGCCGTGAAACAGCTGCAGAACCACGTGCTTCGCCTCCGACACGT
GAAAGCTATTCTCAAATCTGATGATGGGAACGACGAGCGCCGCGTGGTGC
TCCTCGCTACCGAGGTCGAGGAGGGCAAAACTGGCGATGACATCACGCTG
GCCGACCTACCAGCCCCTGTCAAAGCTTTTGTGGAGGCTGCAAAGGAAGA
GCAGGCATCTGACCCCATCATTTCGTCGTCCCCGTCCTCACCAATTTCTT
TGACCATCCACCAAGTGATCATGGACTACAACTGCTTCACTGTGGAGGAA
GTTCTCAAGCAATTCTTCGCTCCCCTGCAAATGGAAGCCCCTACCTCCTT
CGAAACCATCGACCATGTCGCGCATATCAACCTCCGCGATGCCTACCTTC
CATACAAGCGTCTTATCGCCCAAGTCATCCTTGACAAGAACTCTCCCCGT
ATTCGTACCGTGGTAAATAAAACAGGCAACATCGAAACGCGCTTCCGGAC
CTTCCCCCTCGAGGTCCTGGCTGGGGAGAACAACCTGGAGGTGTCCGTCC
GAGAGAGCGGGGCCACCTTCCACTTCAATTACGCCGAGGTTTATTGGAAT
AGCCGCCTCTCCACAGAACACGGTCGTCTGATCCACTCCATCACCAAGCA
GTTTCAAGCGAGGCACCCTCGAAGCCCACTGGCGGCGTGTGTGGTCTGGG
ACGTGTTCGCGGGCGTCGGGCCATTCGCCGTCCCTCTCGGTGTGAAAGGC
TGCGTCGTCCATGCCAATGACCTGAACCCCCGCTCGCACCACTACCTTCT
TGCCAACATCAACAAGAACAAGGTGGACTGCCATGTGACCCCCTACAACG
AGGACGGCCGGGTTTTCCTCCGGGAGCGGGCACGGCGCCGTTTACCCGTG
CATCACGTGATCATGAACCTCCCTGCGTCTGCCCTCGAGTTCCTGGACGA
ATTTTCCGCTCAGAGGGAGCGAGAGGAGGAAGGAAAGGAAGGACAAGAAG
AAGAGGAAGAAGAAGCAGAAGGGCTGTTTGATTATTTGGAGGAGCGGCCT
TACGTACACGTGCATTGTTTTAGCAAGGCCGACGACCCGACAACGGAGGC
TCTGGCTCACGCCTCCGATGCCCTGGGGTGTGAACTCTTGAATGGCAAAA
ATGGGGTGAGTGTTCACCGAGTCAGAGACGTGGCGCCGAAGAAGGAGATG
TTGTGCATATCCTTTCCTTTGCCGCGGTACAGCGAGCTGAGGAGAGGTGG
TGGCGGTGGGAAGAGAGGAACTAAAAGGACGCTGGACGAGGAGGGAAAAG
GCGATTCTAAAGCTGTGGTCCAGAGCAATGCGAAGGAAGAATGA
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Synonyms
Publications