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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr19 | genome | chr19:590541..593394 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G02020.1 vs.
Match: EWM23671.1 (trna (guanine-n -)-methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 604.4 bits (1557), Expect = 3.500e-169 Identity = 308/472 (65.25%), Postives = 367/472 (77.75%), Query Frame = 0
Query: 69 EEFTLDRAAFTRTLRVVALRLPTKLCNAAVKQLQNHVLRLRHVKAILKSDDGNDERRVVLLATEVEEGKTGDDITLADLPAPVKAFVEAAKEEQASDPIISSSPS-SPISLTIHQVIMDYNCFTVEEVLKQFFAPLQMEAPTSFETIDHVAHINLRDAYLPYKRLIAQVILDKNSPRIRTVVNKTGNIETRFRTFPLEVLAGENNLEVSVRESGATFHFNYAEVYWNSRLSTEHGRLIHSITKQFQARHPRSPLAACVVWDVFAGVGPFAVPLGVKGCVVHANDLNPRSHHYLLANINKNKVDCHVTPYNEDGRVFLRERARRRLPVHHVIMNLPASALEFLDEFSAQREREEEGKEGQEEEEEEAEGLFDYLEERPYVHVHCFSKADDPTTEALAHASDALGCELLNGKNGVSVHRVRDVAPKKEMLCISFPLPRYSELRRGGGGGKRGTKRTLDEEGKGDSKAVVQSNAK 540
EE +LD +AF RT RV ALRLP K CN+AVKQLQ H+LRLRHVK I+K +DG D R++LLATEV E + L DLP VK FV A ++ P + P S +SLT HQV +DY F+ EEVL+Q FAPL++EAPTSFET+DHVAH+NLRDA+LPYKRLIAQVILDKN+PRIRTVVNK G+I+T++RTFPLEVLAGE++L VSVRE+GATF FN+AEVYWNSRLSTEH RL++++ F A PR PLA+CVVWDVFAGVGPFA+PLG++GCVVHANDLNPRSHHYL+ NI +NKV +VTPYN DGR FLRERAR+ PV H+IMNLPA+ALEFLD F+A+RE E EEE + GLFDYLE RP VH +CFSKA+DPT EALA AS LGC L+NGKNGVSVHRVRDVAPKKEMLC+SFPLPR+ E KR + ++EG+ D+ +VQ +K
Sbjct: 24 EEVSLDPSAFRRTFRVAALRLPAKYCNSAVKQLQPHLLRLRHVKGIVKPEDGGDTHRLLLLATEVNEQHEDTAVELTDLPDDVKTFVHATNAQEDPTPAAEAEPPCSRVSLTTHQVHLDYASFSAEEVLRQVFAPLRLEAPTSFETVDHVAHLNLRDAHLPYKRLIAQVILDKNAPRIRTVVNKLGSIQTQYRTFPLEVLAGESDLNVSVREAGATFRFNFAEVYWNSRLSTEHARLVNAVVAHFHASRPRVPLASCVVWDVFAGVGPFAIPLGLRGCVVHANDLNPRSHHYLVDNIARNKVGAYVTPYNRDGRDFLRERARQHQPVDHIIMNLPATALEFLDTFAAERE------ETAGEEEGRSRGLFDYLEARPIVHAYCFSKAEDPTAEALARASAILGCVLVNGKNGVSVHRVRDVAPKKEMLCLSFPLPRHCEF---NFSRKRAMESEREKEGREDTVDMVQKRSK 486
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G02020.1 ID=NO19G02020.1|Name=NO19G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2286bp GACTTTACTTGCGAAGTGCGCTGTGTTTCGTGTGGAAGAATGGACCGGGA CATATCTGAGGATACATCAACAAGGAATATTGAGACCTGATGACAGGCTT GTCCTAAAGGAGATAGCTGTTCAAGGACAGCGACAAAGACAGATGAGTAG AAGGGGCAATCACATCGACCGGTAAGCAAACAAGAAAACCACGTGCAATA GAGAACATCTGTGCGGCGAATGTGCTTATTGAGGTAACGTCAAGTTATGG CGACATCCTCTTCGGACGCTGCTAATCCCACCACCCTGAGCACAGAAAAA TAGCTGTTTAGATAAGATACCTTGCCCGAAAGACGGTCCTCATCTCAAGC TATAACCTACTCGTTTATCGCTTTTGACTTTGACGAGGGCACAACGCACA ACACAGAACAACCACAACCTCTCAGAATCTTGGAATTATGTGGACCCACA TACACACCATCATTGTCGGGCGGGGAGATTGAGAAGTCCATCCAGTGATT GATTGAGATAGGCCATGACAAGACATATTTAGGTGAATAGTACCCGCTAG AAAGGTGTTAATGCCAGCATCGGTGAGATTACAGAGTGCCAGCATTTTGG TTTTTGAGGTTCAACAAGTTGTTCGCGGGGGCTCCCCGAAATGGTCTTGT GACTTTCAGTCGAATATCATGCTAAAGGTATCCAAACCCACCATGAGCAC GGGCTGCGGCAGCACGGCCCCGCCTGCGCCGAGGGACGCGGGTGCATCGT CTACCGTGCAGCAGGAAGAATTTACGCTTGATCGCGCTGCCTTTACTCGT ACGCTGCGGGTGGTGGCCCTGCGCCTCCCAACCAAGCTCTGCAACGCCGC CGTGAAACAGCTGCAGAACCACGTGCTTCGCCTCCGACACGTGAAAGCTA TTCTCAAATCTGATGATGGGAACGACGAGCGCCGCGTGGTGCTCCTCGCT ACCGAGGTCGAGGAGGGCAAAACTGGCGATGACATCACGCTGGCCGACCT ACCAGCCCCTGTCAAAGCTTTTGTGGAGGCTGCAAAGGAAGAGCAGGCAT CTGACCCCATCATTTCGTCGTCCCCGTCCTCACCAATTTCTTTGACCATC CACCAAGTGATCATGGACTACAACTGCTTCACTGTGGAGGAAGTTCTCAA GCAATTCTTCGCTCCCCTGCAAATGGAAGCCCCTACCTCCTTCGAAACCA TCGACCATGTCGCGCATATCAACCTCCGCGATGCCTACCTTCCATACAAG CGTCTTATCGCCCAAGTCATCCTTGACAAGAACTCTCCCCGTATTCGTAC CGTGGTAAATAAAACAGGCAACATCGAAACGCGCTTCCGGACCTTCCCCC TCGAGGTCCTGGCTGGGGAGAACAACCTGGAGGTGTCCGTCCGAGAGAGC GGGGCCACCTTCCACTTCAATTACGCCGAGGTTTATTGGAATAGCCGCCT CTCCACAGAACACGGTCGTCTGATCCACTCCATCACCAAGCAGTTTCAAG CGAGGCACCCTCGAAGCCCACTGGCGGCGTGTGTGGTCTGGGACGTGTTC GCGGGCGTCGGGCCATTCGCCGTCCCTCTCGGTGTGAAAGGCTGCGTCGT CCATGCCAATGACCTGAACCCCCGCTCGCACCACTACCTTCTTGCCAACA TCAACAAGAACAAGGTGGACTGCCATGTGACCCCCTACAACGAGGACGGC CGGGTTTTCCTCCGGGAGCGGGCACGGCGCCGTTTACCCGTGCATCACGT GATCATGAACCTCCCTGCGTCTGCCCTCGAGTTCCTGGACGAATTTTCCG CTCAGAGGGAGCGAGAGGAGGAAGGAAAGGAAGGACAAGAAGAAGAGGAA GAAGAAGCAGAAGGGCTGTTTGATTATTTGGAGGAGCGGCCTTACGTACA CGTGCATTGTTTTAGCAAGGCCGACGACCCGACAACGGAGGCTCTGGCTC ACGCCTCCGATGCCCTGGGGTGTGAACTCTTGAATGGCAAAAATGGGGTG AGTGTTCACCGAGTCAGAGACGTGGCGCCGAAGAAGGAGATGTTGTGCAT ATCCTTTCCTTTGCCGCGGTACAGCGAGCTGAGGAGAGGTGGTGGCGGTG GGAAGAGAGGAACTAAAAGGACGCTGGACGAGGAGGGAAAAGGCGATTCT AAAGCTGTGGTCCAGAGCAATGCGAAGGAAGAATGAATCGCACATTTCTG ATGGTGATAAAGTTTGGGGGAAGAGTGAAGCCACGATTAAAGTACACCAC ACCTGAGCAAATTTCAAGTAATTCTCGAAGACACCT back to topprotein sequence of NO19G02020.1 >NO19G02020.1-protein ID=NO19G02020.1-protein|Name=NO19G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=542bp MPASVRLQSASILVFEVQQVVRGGSPKWSCDFQSNIMLKVSKPTMSTGCG STAPPAPRDAGASSTVQQEEFTLDRAAFTRTLRVVALRLPTKLCNAAVKQ LQNHVLRLRHVKAILKSDDGNDERRVVLLATEVEEGKTGDDITLADLPAP VKAFVEAAKEEQASDPIISSSPSSPISLTIHQVIMDYNCFTVEEVLKQFF APLQMEAPTSFETIDHVAHINLRDAYLPYKRLIAQVILDKNSPRIRTVVN KTGNIETRFRTFPLEVLAGENNLEVSVRESGATFHFNYAEVYWNSRLSTE HGRLIHSITKQFQARHPRSPLAACVVWDVFAGVGPFAVPLGVKGCVVHAN DLNPRSHHYLLANINKNKVDCHVTPYNEDGRVFLRERARRRLPVHHVIMN LPASALEFLDEFSAQREREEEGKEGQEEEEEEAEGLFDYLEERPYVHVHC FSKADDPTTEALAHASDALGCELLNGKNGVSVHRVRDVAPKKEMLCISFP LPRYSELRRGGGGGKRGTKRTLDEEGKGDSKAVVQSNAKEE* back to topmRNA from alignment at chr19:590541..593394+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G02020.1 ID=NO19G02020.1|Name=NO19G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2854bp|location=Sequence derived from alignment at chr19:590541..593394+ (Nannochloropsis oceanica) GACTTTACTTGCGAAGTGCGCTGTGTTTCGTGTGGAAGAATGGACCGGGA
CATATCTGAGGATACATCAACAAGGAATATTGAGACCTGATGACAGGCTT
GTCCTAAAGGAGATAGCTGTTCAAGGACAGCGACAAAGACAGATGAGTAG
AAGGGGCAATCACATCGACCGGTAAGCAAACAAGAAAACCACGTGCAATA
GAGAACATCTGTGCGGCGAATGTGCTTATTGAGGTAACGTCAAGTTATGG
CGACATCCTCTTCGGACGCTGCTAATCCCACCACCCTGAGCACAGAAAAA
TAGCTGTTTAGATAAGATACCTTGCCCGAAAGACGGTCCTCATCTCAAGC
TATAACCTACTCGTTTATCGCTTTTGACTTTGACGAGGGCACAACGCACA
ACACAGAACAACCACAACCTCTCAGAATCTTGGAATTATGTGGACCCACA
TACACACCATCATTGTCGGGCGGGGAGATTGAGAAGTCCATCCAGTGATT
GATTGAGATAGGCCATGACAAGACATATTTAGGTGAATAGTACCCGCTAG
AAAGGTGTTAATGCCAGCATCGGTGAGATTACAGAGTGCCAGCATTTTGG
TTTTTGAGGTTCAACAAGTTGTTCGCGGGGGCTCCCCGAAATGGTCTTGT
GACTTTCAGTCGAATATCATGCTAAAGGTGAGGGTTTGTGGGGGGGCGGA
TCGTTGGAGGACGGATATTAAAATGATCTTAAAATGGTTACATTCAGGTA
CCTGCATATTCATTGGAAACAGAAGACCATAAAAGACGTTGGTCAAAGGC
CCGCGGCCTGCTCCTCTGTGTATTCTTCTGCCGAAGAACACCGCTCGGTG
GTCGTCAAAATGCCAAAGTGAACATGCACTCATATCACACCCATTTGCCC
TGTTTACCCCTTGGACAACCCCTTAAAAAGATCCTGTGGGGGAGCGACAT
TTGGCGGCCAAAAACAGTGCGTGGGGGTGACTGAGAACCACAGAATCAGT
TCAGGGATCCCCGAACAGGAGGTTAGGTTTGCCTTGCCCTTCATTCTTCA
CACTGTCATGTCCACTCTCCTTCGCACCCGCAGGTATCCAAACCCACCAT
GAGCACGGGCTGCGGCAGCACGGCCCCGCCTGCGCCGAGGGACGCGGGTG
CATCGTCTACCGTGCAGCAGGAAGAATTTACGCTTGATCGCGCTGCCTTT
ACTCGTACGCTGCGGGTGGTGGCCCTGCGCCTCCCAACCAAGCTCTGCAA
CGCCGCCGTGAAACAGCTGCAGAACCACGTGCTTCGCCTCCGACACGTGA
AAGCTATTCTCAAATCTGATGATGGGAACGACGAGCGCCGCGTGGTGCTC
CTCGCTACCGAGGTCGAGGAGGGCAAAACTGGCGATGACATCACGCTGGC
CGACCTACCAGCCCCTGTCAAAGCTTTTGTGGAGGCTGCAAAGGTAAGAA
CTTTCGGTGTCTACGTGATTGTCTGCAGGCAGATAGTGGTACCAAAGTGG
GACCTCCTCTTTAATTTTTTGAATTATGCCTCCTTCACTGCGTAGACCCT
TGCTCCCTCCTTCAATTTAACCCCAATTCTTCCCTTTCTCTTCCCACAAT
CTTAGGAAGAGCAGGCATCTGACCCCATCATTTCGTCGTCCCCGTCCTCA
CCAATTTCTTTGACCATCCACCAAGTGATCATGGACTACAACTGCTTCAC
TGTGGAGGAAGTTCTCAAGCAATTCTTCGCTCCCCTGCAAATGGAAGCCC
CTACCTCCTTCGAAACCATCGACCATGTCGCGCATATCAACCTCCGCGAT
GCCTACCTTCCATACAAGCGTCTTATCGCCCAAGTCATCCTTGACAAGAA
CTCTCCCCGTATTCGTACCGTGGTAAATAAAACAGGCAACATCGAAACGC
GCTTCCGGACCTTCCCCCTCGAGGTCCTGGCTGGGGAGAACAACCTGGAG
GTGTCCGTCCGAGAGAGCGGGGCCACCTTCCACTTCAATTACGCCGAGGT
TTATTGGAATAGCCGCCTCTCCACAGAACACGGTCGTCTGATCCACTCCA
TCACCAAGCAGTTTCAAGCGAGGCACCCTCGAAGCCCACTGGCGGCGTGT
GTGGTCTGGGACGTGTTCGCGGGCGTCGGGCCATTCGCCGTCCCTCTCGG
TGTGAAAGGCTGCGTCGTCCATGCCAATGACCTGAACCCCCGCTCGCACC
ACTACCTTCTTGCCAACATCAACAAGAACAAGGTGGACTGCCATGTGACC
CCCTACAACGAGGACGGCCGGGTTTTCCTCCGGGAGCGGGCACGGCGCCG
TTTACCCGTGCATCACGTGATCATGAACCTCCCTGCGTCTGCCCTCGAGT
TCCTGGACGAATTTTCCGCTCAGAGGGAGCGAGAGGAGGAAGGAAAGGAA
GGACAAGAAGAAGAGGAAGAAGAAGCAGAAGGGCTGTTTGATTATTTGGA
GGAGCGGCCTTACGTACACGTGCATTGTTTTAGCAAGGCCGACGACCCGA
CAACGGAGGCTCTGGCTCACGCCTCCGATGCCCTGGGGTGTGAACTCTTG
AATGGCAAAAATGGGGTGAGTGTTCACCGAGTCAGAGACGTGGCGCCGAA
GAAGGAGATGTTGTGCATATCCTTTCCTTTGCCGCGGTACAGCGAGCTGA
GGAGAGGTGGTGGCGGTGGGAAGAGAGGAACTAAAAGGACGCTGGACGAG
GAGGGAAAAGGCGATTCTAAAGCTGTGGTCCAGAGCAATGCGAAGGAAGA
ATGAATCGCACATTTCTGATGGTGATAAAGTTTGGGGGAAGAGTGAAGCC
ACGATTAAAGTACACCACACCTGAGCAAATTTCAAGTAATTCTCGAAGAC
ACCT back to topCoding sequence (CDS) from alignment at chr19:590541..593394+ >NO19G02020.1 ID=NO19G02020.1|Name=NO19G02020.1|organism=Nannochloropsis oceanica|type=CDS|length=1626bp|location=Sequence derived from alignment at chr19:590541..593394+ (Nannochloropsis oceanica) ATGCCAGCATCGGTGAGATTACAGAGTGCCAGCATTTTGGTTTTTGAGGT TCAACAAGTTGTTCGCGGGGGCTCCCCGAAATGGTCTTGTGACTTTCAGT CGAATATCATGCTAAAGGTATCCAAACCCACCATGAGCACGGGCTGCGGC AGCACGGCCCCGCCTGCGCCGAGGGACGCGGGTGCATCGTCTACCGTGCA GCAGGAAGAATTTACGCTTGATCGCGCTGCCTTTACTCGTACGCTGCGGG TGGTGGCCCTGCGCCTCCCAACCAAGCTCTGCAACGCCGCCGTGAAACAG CTGCAGAACCACGTGCTTCGCCTCCGACACGTGAAAGCTATTCTCAAATC TGATGATGGGAACGACGAGCGCCGCGTGGTGCTCCTCGCTACCGAGGTCG AGGAGGGCAAAACTGGCGATGACATCACGCTGGCCGACCTACCAGCCCCT GTCAAAGCTTTTGTGGAGGCTGCAAAGGAAGAGCAGGCATCTGACCCCAT CATTTCGTCGTCCCCGTCCTCACCAATTTCTTTGACCATCCACCAAGTGA TCATGGACTACAACTGCTTCACTGTGGAGGAAGTTCTCAAGCAATTCTTC GCTCCCCTGCAAATGGAAGCCCCTACCTCCTTCGAAACCATCGACCATGT CGCGCATATCAACCTCCGCGATGCCTACCTTCCATACAAGCGTCTTATCG CCCAAGTCATCCTTGACAAGAACTCTCCCCGTATTCGTACCGTGGTAAAT AAAACAGGCAACATCGAAACGCGCTTCCGGACCTTCCCCCTCGAGGTCCT GGCTGGGGAGAACAACCTGGAGGTGTCCGTCCGAGAGAGCGGGGCCACCT TCCACTTCAATTACGCCGAGGTTTATTGGAATAGCCGCCTCTCCACAGAA CACGGTCGTCTGATCCACTCCATCACCAAGCAGTTTCAAGCGAGGCACCC TCGAAGCCCACTGGCGGCGTGTGTGGTCTGGGACGTGTTCGCGGGCGTCG GGCCATTCGCCGTCCCTCTCGGTGTGAAAGGCTGCGTCGTCCATGCCAAT GACCTGAACCCCCGCTCGCACCACTACCTTCTTGCCAACATCAACAAGAA CAAGGTGGACTGCCATGTGACCCCCTACAACGAGGACGGCCGGGTTTTCC TCCGGGAGCGGGCACGGCGCCGTTTACCCGTGCATCACGTGATCATGAAC CTCCCTGCGTCTGCCCTCGAGTTCCTGGACGAATTTTCCGCTCAGAGGGA GCGAGAGGAGGAAGGAAAGGAAGGACAAGAAGAAGAGGAAGAAGAAGCAG AAGGGCTGTTTGATTATTTGGAGGAGCGGCCTTACGTACACGTGCATTGT TTTAGCAAGGCCGACGACCCGACAACGGAGGCTCTGGCTCACGCCTCCGA TGCCCTGGGGTGTGAACTCTTGAATGGCAAAAATGGGGTGAGTGTTCACC GAGTCAGAGACGTGGCGCCGAAGAAGGAGATGTTGTGCATATCCTTTCCT TTGCCGCGGTACAGCGAGCTGAGGAGAGGTGGTGGCGGTGGGAAGAGAGG AACTAAAAGGACGCTGGACGAGGAGGGAAAAGGCGATTCTAAAGCTGTGG TCCAGAGCAATGCGAAGGAAGAATGA back to top
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