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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr19 | genome | chr19:575363..577333 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G01970.1 vs.
Match: EWM23692.1 (aaa-type atpase family protein [Nannochloropsis gaditana]) HSP 1 Score: 680.2 bits (1754), Expect = 6.200e-192 Identity = 401/669 (59.94%), Postives = 468/669 (69.96%), Query Frame = 0
Query: 1 MLHQRKAAMAAAAAGACRSIRSVASTLPSSSLSTRIYFMDHPPLHTARPASMASS-----SSSSNAWLPAALVAVATASVLTSLTEAAPPTA----AASAPDSSDDTKDNSK--ENVLPMREVMALIESRLKPFRTERFLSSRPRRSSRSGSGTFPPTVGEHDLPTVASKTFPKIAVLSKGKGVDEPYTIEVPLPPTASRETNVLAACLHALQKKGHTLTFHTGLTTNNGTSLSFVFGDQSGSVLLTSSSAVAAPSSSTEVMPSTGTGKSSLLLYKTKGFTEADVDAVVDSYIMAWRSSPDDQLTGSFLSNFTDVLDALRIGGGGGGKYAFDHEQDVPYSSPQRPVPPHSPFSRPSSTRGESIVERGGGIGSGQNGTAVMGENDPVSRLKKLGAEVFEKATEEELDWTCLAGYESIKAEVEDTVVMALQHAEAYDAIARQTRERYESNRPRAVLFEGPPGTGKTLTARIIASRTEVPLVFISTERVLSKWYGDSEKNLAKVFEACKELGGAIIFIDEVDALAASRDTNMHEATRRLLSVILQSIEGFRGRNKNVLICATNRKQDLDSALLSRFDVSIKFDLPTCPARQAIFARYAKHLAGNELARLAEASEAYSCRDIKEVCENTERKWASKTIRGQADGLTPPLKEYLNQLKAQTLSDHQTLP--HNV 657
M+ +R AA+ AAA +R+ + +P++ S + + P T M S + +A + ALVA A ASV + A P T A P S + DNSK + +LPM EVM+ I+ RLK FRTERFL+ R RSG T P A+ +FPKIAVL+KG+ +EP+TIEVPLP E VLAA L ALQKKGHT+TFHTGL ++ GTSLSFV DQSGS+LLTSS A + PS + + + G S LLL+K +GFTE DVDAVV+SYI AW + D + G NF +LDA R GG G + D EQD P PF P STRG ++R G + G T G NDPV+RL+KLGAEVFEK EE+DW+CLAGYE +KAEVEDTVVMALQHAEAY+AIARQTRERYESNRPRAVLFEGPPGTGKTLTARI+ASRTEVPLVF+ TERVLSKWYGDSEKNLAK+FEAC+ELGGAIIFIDEVDALA SRD+NMHEATRRLLSVILQSIEGF+G ++NVLICATNR+QDLDSALLSRFDVSIKF+LP ARQAIFARYAKHL ELARLAEASE +SCRDIKE CEN ERKWASKT+RGQ G TP L+EYL QLKA L+ H+ P HN+
Sbjct: 1 MIRKRHAAVGPAAA----LLRTSSGAIPATPFSFFVPSCESRPSCTWTARGMPSRPLHVRQAKDSASVDRALVAAALASVAAASFIAQPWTKSDMEAVQGPGGSGGSDDNSKVKDKLLPMSEVMSQIQDRLKQFRTERFLAPSHRGPGRSGGEGSRRTRD----PLQAATSFPKIAVLTKGRSAEEPFTIEVPLPARGGSEARVLAASLQALQKKGHTITFHTGLASDQGTSLSFVLADQSGSLLLTSSPAASVPSEAPQAVLPARPGTSRLLLFKKEGFTEGDVDAVVESYISAWSGNAGDPIAG----NFASILDAFRAGGTAGVQQFLDSEQDTPL-----------PFF-PPSTRGA--LDRPGVVMGGNQETDTAGRNDPVARLRKLGAEVFEKGKGEEVDWSCLAGYEGVKAEVEDTVVMALQHAEAYEAIARQTRERYESNRPRAVLFEGPPGTGKTLTARIVASRTEVPLVFVPTERVLSKWYGDSEKNLAKIFEACQELGGAIIFIDEVDALATSRDSNMHEATRRLLSVILQSIEGFKGGSQNVLICATNRRQDLDSALLSRFDVSIKFELPALGARQAIFARYAKHLKAEELARLAEASEGFSCRDIKETCENVERKWASKTLRGQERGPTPVLQEYLQQLKAMHLA-HRRSPQSHNL 642
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G01970.1 ID=NO19G01970.1|Name=NO19G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1971bp
ATGCTCCACCAGCGGAAAGCGGCGATGGCAGCCGCCGCTGCCGGCGCGTG
CCGCAGCATTCGCAGCGTCGCATCGACCTTGCCCTCCTCTTCGCTCTCGA
CACGCATCTATTTTATGGACCACCCGCCGCTCCACACCGCGCGCCCCGCG
TCTATGGCATCCTCTTCTTCGTCGTCTAATGCTTGGCTGCCAGCCGCGCT
GGTGGCCGTGGCAACTGCTTCCGTCCTGACGTCGCTGACAGAGGCAGCGC
CACCTACAGCGGCGGCGTCGGCACCGGACAGCAGCGACGACACCAAAGAT
AATTCAAAGGAAAATGTGTTGCCTATGCGAGAGGTCATGGCATTGATCGA
AAGCCGGCTGAAGCCCTTTCGCACGGAGCGCTTCCTTTCTTCTCGACCTC
GCAGAAGTAGCAGAAGCGGCAGCGGTACATTTCCTCCTACCGTCGGGGAG
CACGACCTCCCCACCGTTGCCAGCAAAACTTTCCCCAAAATCGCCGTGTT
GAGCAAGGGCAAGGGCGTGGATGAGCCCTACACCATCGAAGTTCCCTTGC
CGCCAACGGCCAGTAGGGAAACAAATGTGCTCGCAGCCTGCCTACATGCC
TTGCAGAAGAAGGGGCACACGCTCACGTTCCACACGGGCTTGACCACAAA
CAATGGAACCAGCCTTTCCTTCGTCTTCGGCGACCAGTCCGGATCCGTCC
TTCTGACCTCTTCGTCGGCTGTCGCGGCGCCATCATCGTCGACTGAGGTG
ATGCCATCGACAGGGACAGGCAAATCAAGCCTCCTTCTGTACAAGACCAA
GGGCTTTACAGAAGCGGACGTAGACGCGGTTGTTGATTCGTACATCATGG
CTTGGAGGAGCAGCCCAGACGATCAGCTCACCGGCTCATTCCTCAGCAAT
TTTACGGATGTCCTAGATGCGCTCCGTATTGGTGGCGGCGGTGGTGGCAA
ATACGCATTTGATCACGAGCAGGACGTCCCTTACTCGTCCCCTCAGCGCC
CCGTCCCACCACATTCCCCCTTTTCCCGGCCGTCCTCGACCCGCGGGGAA
AGCATAGTTGAGCGAGGCGGCGGTATCGGGAGCGGGCAGAATGGCACTGC
TGTGATGGGAGAAAACGACCCGGTGTCCAGGCTAAAGAAGCTTGGCGCGG
AGGTGTTCGAAAAGGCGACGGAAGAGGAACTGGACTGGACTTGCCTAGCG
GGATACGAGAGCATCAAGGCTGAGGTAGAGGATACAGTAGTCATGGCCTT
GCAGCACGCCGAGGCCTACGATGCTATTGCCCGTCAGACCCGCGAGCGTT
ATGAGAGTAATCGCCCAAGGGCCGTTCTTTTTGAGGGCCCTCCAGGGACG
GGCAAGACATTGACCGCTCGCATCATTGCTAGCCGTACGGAGGTGCCGTT
GGTCTTCATTTCAACAGAGCGCGTCCTCAGTAAATGGTATGGCGATTCGG
AGAAGAATTTGGCGAAGGTTTTCGAGGCATGCAAAGAACTGGGAGGGGCT
ATCATCTTTATTGACGAAGTAGACGCGTTGGCTGCCAGCCGAGACACTAA
CATGCACGAGGCTACGAGGCGTCTCCTTAGTGTCATACTGCAGAGTATCG
AGGGCTTTAGAGGCCGCAACAAAAACGTGCTCATATGCGCCACCAACCGC
AAGCAAGACCTCGATTCGGCCTTACTTTCTCGATTTGACGTATCCATCAA
GTTTGACCTGCCCACATGCCCTGCCCGTCAGGCGATCTTTGCCCGGTACG
CAAAACATTTGGCCGGGAATGAGCTAGCCCGTCTGGCGGAGGCTTCCGAA
GCCTACTCCTGCAGGGATATTAAGGAGGTGTGTGAAAATACGGAGCGGAA
GTGGGCTTCCAAAACCATTCGTGGACAAGCGGACGGCCTCACACCGCCAC
TCAAGGAGTACCTCAATCAACTCAAAGCGCAGACCCTTTCCGATCATCAA
ACCCTGCCTCATAACGTTTAA back to topprotein sequence of NO19G01970.1 >NO19G01970.1-protein ID=NO19G01970.1-protein|Name=NO19G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=657bp
MLHQRKAAMAAAAAGACRSIRSVASTLPSSSLSTRIYFMDHPPLHTARPA
SMASSSSSSNAWLPAALVAVATASVLTSLTEAAPPTAAASAPDSSDDTKD
NSKENVLPMREVMALIESRLKPFRTERFLSSRPRRSSRSGSGTFPPTVGE
HDLPTVASKTFPKIAVLSKGKGVDEPYTIEVPLPPTASRETNVLAACLHA
LQKKGHTLTFHTGLTTNNGTSLSFVFGDQSGSVLLTSSSAVAAPSSSTEV
MPSTGTGKSSLLLYKTKGFTEADVDAVVDSYIMAWRSSPDDQLTGSFLSN
FTDVLDALRIGGGGGGKYAFDHEQDVPYSSPQRPVPPHSPFSRPSSTRGE
SIVERGGGIGSGQNGTAVMGENDPVSRLKKLGAEVFEKATEEELDWTCLA
GYESIKAEVEDTVVMALQHAEAYDAIARQTRERYESNRPRAVLFEGPPGT
GKTLTARIIASRTEVPLVFISTERVLSKWYGDSEKNLAKVFEACKELGGA
IIFIDEVDALAASRDTNMHEATRRLLSVILQSIEGFRGRNKNVLICATNR
KQDLDSALLSRFDVSIKFDLPTCPARQAIFARYAKHLAGNELARLAEASE
AYSCRDIKEVCENTERKWASKTIRGQADGLTPPLKEYLNQLKAQTLSDHQ
TLPHNV* back to topmRNA from alignment at chr19:575363..577333- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G01970.1 ID=NO19G01970.1|Name=NO19G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1971bp|location=Sequence derived from alignment at chr19:575363..577333- (Nannochloropsis oceanica)
ATGCTCCACCAGCGGAAAGCGGCGATGGCAGCCGCCGCTGCCGGCGCGTG
CCGCAGCATTCGCAGCGTCGCATCGACCTTGCCCTCCTCTTCGCTCTCGA
CACGCATCTATTTTATGGACCACCCGCCGCTCCACACCGCGCGCCCCGCG
TCTATGGCATCCTCTTCTTCGTCGTCTAATGCTTGGCTGCCAGCCGCGCT
GGTGGCCGTGGCAACTGCTTCCGTCCTGACGTCGCTGACAGAGGCAGCGC
CACCTACAGCGGCGGCGTCGGCACCGGACAGCAGCGACGACACCAAAGAT
AATTCAAAGGAAAATGTGTTGCCTATGCGAGAGGTCATGGCATTGATCGA
AAGCCGGCTGAAGCCCTTTCGCACGGAGCGCTTCCTTTCTTCTCGACCTC
GCAGAAGTAGCAGAAGCGGCAGCGGTACATTTCCTCCTACCGTCGGGGAG
CACGACCTCCCCACCGTTGCCAGCAAAACTTTCCCCAAAATCGCCGTGTT
GAGCAAGGGCAAGGGCGTGGATGAGCCCTACACCATCGAAGTTCCCTTGC
CGCCAACGGCCAGTAGGGAAACAAATGTGCTCGCAGCCTGCCTACATGCC
TTGCAGAAGAAGGGGCACACGCTCACGTTCCACACGGGCTTGACCACAAA
CAATGGAACCAGCCTTTCCTTCGTCTTCGGCGACCAGTCCGGATCCGTCC
TTCTGACCTCTTCGTCGGCTGTCGCGGCGCCATCATCGTCGACTGAGGTG
ATGCCATCGACAGGGACAGGCAAATCAAGCCTCCTTCTGTACAAGACCAA
GGGCTTTACAGAAGCGGACGTAGACGCGGTTGTTGATTCGTACATCATGG
CTTGGAGGAGCAGCCCAGACGATCAGCTCACCGGCTCATTCCTCAGCAAT
TTTACGGATGTCCTAGATGCGCTCCGTATTGGTGGCGGCGGTGGTGGCAA
ATACGCATTTGATCACGAGCAGGACGTCCCTTACTCGTCCCCTCAGCGCC
CCGTCCCACCACATTCCCCCTTTTCCCGGCCGTCCTCGACCCGCGGGGAA
AGCATAGTTGAGCGAGGCGGCGGTATCGGGAGCGGGCAGAATGGCACTGC
TGTGATGGGAGAAAACGACCCGGTGTCCAGGCTAAAGAAGCTTGGCGCGG
AGGTGTTCGAAAAGGCGACGGAAGAGGAACTGGACTGGACTTGCCTAGCG
GGATACGAGAGCATCAAGGCTGAGGTAGAGGATACAGTAGTCATGGCCTT
GCAGCACGCCGAGGCCTACGATGCTATTGCCCGTCAGACCCGCGAGCGTT
ATGAGAGTAATCGCCCAAGGGCCGTTCTTTTTGAGGGCCCTCCAGGGACG
GGCAAGACATTGACCGCTCGCATCATTGCTAGCCGTACGGAGGTGCCGTT
GGTCTTCATTTCAACAGAGCGCGTCCTCAGTAAATGGTATGGCGATTCGG
AGAAGAATTTGGCGAAGGTTTTCGAGGCATGCAAAGAACTGGGAGGGGCT
ATCATCTTTATTGACGAAGTAGACGCGTTGGCTGCCAGCCGAGACACTAA
CATGCACGAGGCTACGAGGCGTCTCCTTAGTGTCATACTGCAGAGTATCG
AGGGCTTTAGAGGCCGCAACAAAAACGTGCTCATATGCGCCACCAACCGC
AAGCAAGACCTCGATTCGGCCTTACTTTCTCGATTTGACGTATCCATCAA
GTTTGACCTGCCCACATGCCCTGCCCGTCAGGCGATCTTTGCCCGGTACG
CAAAACATTTGGCCGGGAATGAGCTAGCCCGTCTGGCGGAGGCTTCCGAA
GCCTACTCCTGCAGGGATATTAAGGAGGTGTGTGAAAATACGGAGCGGAA
GTGGGCTTCCAAAACCATTCGTGGACAAGCGGACGGCCTCACACCGCCAC
TCAAGGAGTACCTCAATCAACTCAAAGCGCAGACCCTTTCCGATCATCAA
ACCCTGCCTCATAACGTTTAA back to topCoding sequence (CDS) from alignment at chr19:575363..577333- >NO19G01970.1 ID=NO19G01970.1|Name=NO19G01970.1|organism=Nannochloropsis oceanica|type=CDS|length=1971bp|location=Sequence derived from alignment at chr19:575363..577333- (Nannochloropsis oceanica)
ATGCTCCACCAGCGGAAAGCGGCGATGGCAGCCGCCGCTGCCGGCGCGTG
CCGCAGCATTCGCAGCGTCGCATCGACCTTGCCCTCCTCTTCGCTCTCGA
CACGCATCTATTTTATGGACCACCCGCCGCTCCACACCGCGCGCCCCGCG
TCTATGGCATCCTCTTCTTCGTCGTCTAATGCTTGGCTGCCAGCCGCGCT
GGTGGCCGTGGCAACTGCTTCCGTCCTGACGTCGCTGACAGAGGCAGCGC
CACCTACAGCGGCGGCGTCGGCACCGGACAGCAGCGACGACACCAAAGAT
AATTCAAAGGAAAATGTGTTGCCTATGCGAGAGGTCATGGCATTGATCGA
AAGCCGGCTGAAGCCCTTTCGCACGGAGCGCTTCCTTTCTTCTCGACCTC
GCAGAAGTAGCAGAAGCGGCAGCGGTACATTTCCTCCTACCGTCGGGGAG
CACGACCTCCCCACCGTTGCCAGCAAAACTTTCCCCAAAATCGCCGTGTT
GAGCAAGGGCAAGGGCGTGGATGAGCCCTACACCATCGAAGTTCCCTTGC
CGCCAACGGCCAGTAGGGAAACAAATGTGCTCGCAGCCTGCCTACATGCC
TTGCAGAAGAAGGGGCACACGCTCACGTTCCACACGGGCTTGACCACAAA
CAATGGAACCAGCCTTTCCTTCGTCTTCGGCGACCAGTCCGGATCCGTCC
TTCTGACCTCTTCGTCGGCTGTCGCGGCGCCATCATCGTCGACTGAGGTG
ATGCCATCGACAGGGACAGGCAAATCAAGCCTCCTTCTGTACAAGACCAA
GGGCTTTACAGAAGCGGACGTAGACGCGGTTGTTGATTCGTACATCATGG
CTTGGAGGAGCAGCCCAGACGATCAGCTCACCGGCTCATTCCTCAGCAAT
TTTACGGATGTCCTAGATGCGCTCCGTATTGGTGGCGGCGGTGGTGGCAA
ATACGCATTTGATCACGAGCAGGACGTCCCTTACTCGTCCCCTCAGCGCC
CCGTCCCACCACATTCCCCCTTTTCCCGGCCGTCCTCGACCCGCGGGGAA
AGCATAGTTGAGCGAGGCGGCGGTATCGGGAGCGGGCAGAATGGCACTGC
TGTGATGGGAGAAAACGACCCGGTGTCCAGGCTAAAGAAGCTTGGCGCGG
AGGTGTTCGAAAAGGCGACGGAAGAGGAACTGGACTGGACTTGCCTAGCG
GGATACGAGAGCATCAAGGCTGAGGTAGAGGATACAGTAGTCATGGCCTT
GCAGCACGCCGAGGCCTACGATGCTATTGCCCGTCAGACCCGCGAGCGTT
ATGAGAGTAATCGCCCAAGGGCCGTTCTTTTTGAGGGCCCTCCAGGGACG
GGCAAGACATTGACCGCTCGCATCATTGCTAGCCGTACGGAGGTGCCGTT
GGTCTTCATTTCAACAGAGCGCGTCCTCAGTAAATGGTATGGCGATTCGG
AGAAGAATTTGGCGAAGGTTTTCGAGGCATGCAAAGAACTGGGAGGGGCT
ATCATCTTTATTGACGAAGTAGACGCGTTGGCTGCCAGCCGAGACACTAA
CATGCACGAGGCTACGAGGCGTCTCCTTAGTGTCATACTGCAGAGTATCG
AGGGCTTTAGAGGCCGCAACAAAAACGTGCTCATATGCGCCACCAACCGC
AAGCAAGACCTCGATTCGGCCTTACTTTCTCGATTTGACGTATCCATCAA
GTTTGACCTGCCCACATGCCCTGCCCGTCAGGCGATCTTTGCCCGGTACG
CAAAACATTTGGCCGGGAATGAGCTAGCCCGTCTGGCGGAGGCTTCCGAA
GCCTACTCCTGCAGGGATATTAAGGAGGTGTGTGAAAATACGGAGCGGAA
GTGGGCTTCCAAAACCATTCGTGGACAAGCGGACGGCCTCACACCGCCAC
TCAAGGAGTACCTCAATCAACTCAAAGCGCAGACCCTTTCCGATCATCAA
ACCCTGCCTCATAACGTTTAA back to top
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