NO19G01910.1, NO19G01910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01910.1
Unique NameNO19G01910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1895
Alignment locationchr19:563338..565232 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:563338..565232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01910.1 vs.
Match: EWM23705.1 (Protein-tyrosine phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 290.4 bits (742), Expect = 7.300e-75
Identity = 149/269 (55.39%), Postives = 175/269 (65.06%), Query Frame = 0 
Query:   58 DSVNDNPPDYAVAKVLQKITKWKDYTNYGQPLGNSRVIPMKTPLPLDLQRHHFPTSPSSS------------AVLHKDAESEAHVHTIGKFVKEQADLGRNVGLVVDLSNHSCLYEDDLSRDCPLVKYEHFFFVAKEIPSHAICQRVNQCITAYVLANPQDYVAIHCSYGWNRTGFVCATYLVEELHYGASQALAAFTSARSPGIRHEHFISEFLSRYSDSGGDAVGMTGERSVVGQETGEEKGTVLLGAQTEGNGRETNNETLGAVLG 315
            D+++      +VA VLQKITKWKDY NYG P+G SRVIPMKTPL L+LQ  HFP + SSS              +    E++  VHTI KFV+EQA LGR +GLVVDLSNH CLYE+DL RDCP V YEHF FVAK IP    C+ V +CIT Y+  NP+ YVAIHCSYGWNRTG++CA YLVEEL Y AS ALAAF  AR PGI+HEHF+SEFL+RY++         G R+                A+T    RE NNETLG  LG
Sbjct:   43 DTMSTTMLPQSVASVLQKITKWKDYANYGNPVGESRVIPMKTPLTLELQGAHFPPATSSSPSHTPNTEVTGSGEISSKPEADFQVHTIQKFVQEQAILGRTIGLVVDLSNHECLYEEDLKRDCPHVSYEHFLFVAKNIPDRNGCRDVGRCITGYLAGNPEHYVAIHCSYGWNRTGYICAAYLVEELRYTASDALAAFAQARPPGIKHEHFLSEFLARYTEKTEKPPRQEGARTKSASSV----------AETARGQREINNETLGPSLG 301
The following BLAST results are available for this feature:
BLAST of NO19G01910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23705.17.300e-7555.39Protein-tyrosine phosphatase [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01910NO19G01910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01910.1NO19G01910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01910.1.cds1NO19G01910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01910.1 ID=NO19G01910.1|Name=NO19G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1895bp
TTGCGAGTCGGACATAAACAATATTAATAGAGTCGGTCACTTCTAAACGC
CTCTATTCCACTGTGAACACTTAAGCTAGACGCGTTAGGCAGCAGATAAA
TACGACTGGCAAGACCAGCGGAGCCTGTCCCGCGTGCGGCCTTGGGTAAG
GGGTCCCCCCCTGGGGAGGACGCACGCAGTGGAAGGAGATGCACCCCCCT
CTCAAGGCTCGTACTTGCATGAATGAATTAACGCTCCCACGTACAATACA
ATCCATAACAAGACAACAGCCTGGTTTCGTTGGAGTGCAGATACAAGGAT
AAGAACAAGGGGGCAAGTAATAACGGAGCTGTCTTTTCCCTCTTCGTCCC
GGACCCAGGGCTACGCCTGCCTCCCTTCAGCTCAAGCACAAATCCTCTCT
CTGTGAAAGAAACAATGTTGGACGAGACGCGAAGTCTTGAGACGCACGCT
CCTGCAGCCGCGGATGGCCTGATGGGGCAAGCTTATGGAAGAGGCCGCTA
CGGGCACGCACACGAGCAGCACAAGAGCCATCCTAAACTGGAGAGCACTC
ACACACCTGTGCAGCCTCAAGCTGCCCGAGGGCAAGACAGCGTTAACGAC
AATCCCCCGGATTACGCCGTGGCAAAGGTGCTTCAAAAGATCACAAAATG
GAAAGATTACACGAACTACGGTCAACCCCTTGGCAACTCCCGCGTCATTC
CTATGAAGACTCCTCTGCCCCTTGACTTGCAGCGTCATCACTTTCCAACG
TCCCCTTCTTCGAGCGCTGTCCTACACAAGGACGCCGAGTCCGAGGCGCA
TGTGCACACCATCGGAAAGTTTGTCAAGGAGCAGGCTGACCTCGGGCGGA
ATGTTGGGCTAGTCGTGGACCTCTCCAACCACTCATGTTTGTACGAGGAC
GACCTGAGTCGAGACTGCCCTCTCGTCAAGTATGAACACTTCTTTTTCGT
GGCCAAGGAGATTCCCAGTCACGCTATTTGTCAGCGCGTGAATCAATGCA
TTACGGCATACGTCTTGGCCAATCCGCAGGACTACGTAGCAATCCACTGC
AGCTATGGATGGAACCGCACTGGATTCGTCTGCGCCACCTACTTGGTGGA
GGAGCTACATTATGGCGCGTCCCAGGCCCTGGCTGCATTCACCTCGGCCC
GATCACCAGGGATTCGACACGAACACTTCATAAGTGAGTTCTTGTCACGC
TATAGTGATAGTGGCGGCGATGCCGTCGGCATGACAGGGGAGAGGTCGGT
GGTAGGGCAAGAGACTGGCGAGGAAAAGGGAACGGTCCTGCTTGGGGCGC
AGACGGAGGGAAATGGCCGAGAGACCAATAATGAGACGCTGGGAGCCGTG
CTGGGACTAGAAATGCTGCAGGCCCTTCAAAAAGCGTCTCGAAGGCAGGG
AGGCGGATTCGCGGACGAGCCGCGGCGGATGTCGTCGATGAGGAGCTGCT
GCTTGTCCTAGCGGTCCGCTCGGAGGGGGGTATTCTCAATGGGGACACTG
TGTGCTTGATTGTGGTCTTCTCACCTTCAGGAGACGAGATTTTATTTCTA
GGAGCAGCTGGTTGAGCATAGAGATGAAGAATGGAAGGCAGAGTGTGTCA
TGAATGCGAGGTACGGGCAGGCACCAGACTGTCAACTCTTGTATATTACG
ATATTATGTCAGCTGGGGCAGTAGGGTGTTATACGTACATTTGTGGGCAG
TTGCACAGGCAAAGCGGGGCGTGTGATATTGAGAGCTGTGCGAGGAAAAA
TCGCACACACATACACACACGAGAGACTTGCCGTCCTCTGTAAGTTGGAT
TGGTATTTGTACATGAAGGTATGTATCACAGAAAATCCTTCAGTCCTACA
CATAAAGTGTAAAGAAATGTGTGAGAAACACCGTACACGTATGTA
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protein sequence of NO19G01910.1

>NO19G01910.1-protein ID=NO19G01910.1-protein|Name=NO19G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MLDETRSLETHAPAAADGLMGQAYGRGRYGHAHEQHKSHPKLESTHTPVQ
PQAARGQDSVNDNPPDYAVAKVLQKITKWKDYTNYGQPLGNSRVIPMKTP
LPLDLQRHHFPTSPSSSAVLHKDAESEAHVHTIGKFVKEQADLGRNVGLV
VDLSNHSCLYEDDLSRDCPLVKYEHFFFVAKEIPSHAICQRVNQCITAYV
LANPQDYVAIHCSYGWNRTGFVCATYLVEELHYGASQALAAFTSARSPGI
RHEHFISEFLSRYSDSGGDAVGMTGERSVVGQETGEEKGTVLLGAQTEGN
GRETNNETLGAVLGLEMLQALQKASRRQGGGFADEPRRMSSMRSCCLS*
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mRNA from alignment at chr19:563338..565232-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01910.1 ID=NO19G01910.1|Name=NO19G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1895bp|location=Sequence derived from alignment at chr19:563338..565232- (Nannochloropsis oceanica)
TTGCGAGTCGGACATAAACAATATTAATAGAGTCGGTCACTTCTAAACGC
CTCTATTCCACTGTGAACACTTAAGCTAGACGCGTTAGGCAGCAGATAAA
TACGACTGGCAAGACCAGCGGAGCCTGTCCCGCGTGCGGCCTTGGGTAAG
GGGTCCCCCCCTGGGGAGGACGCACGCAGTGGAAGGAGATGCACCCCCCT
CTCAAGGCTCGTACTTGCATGAATGAATTAACGCTCCCACGTACAATACA
ATCCATAACAAGACAACAGCCTGGTTTCGTTGGAGTGCAGATACAAGGAT
AAGAACAAGGGGGCAAGTAATAACGGAGCTGTCTTTTCCCTCTTCGTCCC
GGACCCAGGGCTACGCCTGCCTCCCTTCAGCTCAAGCACAAATCCTCTCT
CTGTGAAAGAAACAATGTTGGACGAGACGCGAAGTCTTGAGACGCACGCT
CCTGCAGCCGCGGATGGCCTGATGGGGCAAGCTTATGGAAGAGGCCGCTA
CGGGCACGCACACGAGCAGCACAAGAGCCATCCTAAACTGGAGAGCACTC
ACACACCTGTGCAGCCTCAAGCTGCCCGAGGGCAAGACAGCGTTAACGAC
AATCCCCCGGATTACGCCGTGGCAAAGGTGCTTCAAAAGATCACAAAATG
GAAAGATTACACGAACTACGGTCAACCCCTTGGCAACTCCCGCGTCATTC
CTATGAAGACTCCTCTGCCCCTTGACTTGCAGCGTCATCACTTTCCAACG
TCCCCTTCTTCGAGCGCTGTCCTACACAAGGACGCCGAGTCCGAGGCGCA
TGTGCACACCATCGGAAAGTTTGTCAAGGAGCAGGCTGACCTCGGGCGGA
ATGTTGGGCTAGTCGTGGACCTCTCCAACCACTCATGTTTGTACGAGGAC
GACCTGAGTCGAGACTGCCCTCTCGTCAAGTATGAACACTTCTTTTTCGT
GGCCAAGGAGATTCCCAGTCACGCTATTTGTCAGCGCGTGAATCAATGCA
TTACGGCATACGTCTTGGCCAATCCGCAGGACTACGTAGCAATCCACTGC
AGCTATGGATGGAACCGCACTGGATTCGTCTGCGCCACCTACTTGGTGGA
GGAGCTACATTATGGCGCGTCCCAGGCCCTGGCTGCATTCACCTCGGCCC
GATCACCAGGGATTCGACACGAACACTTCATAAGTGAGTTCTTGTCACGC
TATAGTGATAGTGGCGGCGATGCCGTCGGCATGACAGGGGAGAGGTCGGT
GGTAGGGCAAGAGACTGGCGAGGAAAAGGGAACGGTCCTGCTTGGGGCGC
AGACGGAGGGAAATGGCCGAGAGACCAATAATGAGACGCTGGGAGCCGTG
CTGGGACTAGAAATGCTGCAGGCCCTTCAAAAAGCGTCTCGAAGGCAGGG
AGGCGGATTCGCGGACGAGCCGCGGCGGATGTCGTCGATGAGGAGCTGCT
GCTTGTCCTAGCGGTCCGCTCGGAGGGGGGTATTCTCAATGGGGACACTG
TGTGCTTGATTGTGGTCTTCTCACCTTCAGGAGACGAGATTTTATTTCTA
GGAGCAGCTGGTTGAGCATAGAGATGAAGAATGGAAGGCAGAGTGTGTCA
TGAATGCGAGGTACGGGCAGGCACCAGACTGTCAACTCTTGTATATTACG
ATATTATGTCAGCTGGGGCAGTAGGGTGTTATACGTACATTTGTGGGCAG
TTGCACAGGCAAAGCGGGGCGTGTGATATTGAGAGCTGTGCGAGGAAAAA
TCGCACACACATACACACACGAGAGACTTGCCGTCCTCTGTAAGTTGGAT
TGGTATTTGTACATGAAGGTATGTATCACAGAAAATCCTTCAGTCCTACA
CATAAAGTGTAAAGAAATGTGTGAGAAACACCGTACACGTATGTA
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Coding sequence (CDS) from alignment at chr19:563338..565232-

>NO19G01910.1 ID=NO19G01910.1|Name=NO19G01910.1|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at chr19:563338..565232- (Nannochloropsis oceanica)
ATGTTGGACGAGACGCGAAGTCTTGAGACGCACGCTCCTGCAGCCGCGGA
TGGCCTGATGGGGCAAGCTTATGGAAGAGGCCGCTACGGGCACGCACACG
AGCAGCACAAGAGCCATCCTAAACTGGAGAGCACTCACACACCTGTGCAG
CCTCAAGCTGCCCGAGGGCAAGACAGCGTTAACGACAATCCCCCGGATTA
CGCCGTGGCAAAGGTGCTTCAAAAGATCACAAAATGGAAAGATTACACGA
ACTACGGTCAACCCCTTGGCAACTCCCGCGTCATTCCTATGAAGACTCCT
CTGCCCCTTGACTTGCAGCGTCATCACTTTCCAACGTCCCCTTCTTCGAG
CGCTGTCCTACACAAGGACGCCGAGTCCGAGGCGCATGTGCACACCATCG
GAAAGTTTGTCAAGGAGCAGGCTGACCTCGGGCGGAATGTTGGGCTAGTC
GTGGACCTCTCCAACCACTCATGTTTGTACGAGGACGACCTGAGTCGAGA
CTGCCCTCTCGTCAAGTATGAACACTTCTTTTTCGTGGCCAAGGAGATTC
CCAGTCACGCTATTTGTCAGCGCGTGAATCAATGCATTACGGCATACGTC
TTGGCCAATCCGCAGGACTACGTAGCAATCCACTGCAGCTATGGATGGAA
CCGCACTGGATTCGTCTGCGCCACCTACTTGGTGGAGGAGCTACATTATG
GCGCGTCCCAGGCCCTGGCTGCATTCACCTCGGCCCGATCACCAGGGATT
CGACACGAACACTTCATAAGTGAGTTCTTGTCACGCTATAGTGATAGTGG
CGGCGATGCCGTCGGCATGACAGGGGAGAGGTCGGTGGTAGGGCAAGAGA
CTGGCGAGGAAAAGGGAACGGTCCTGCTTGGGGCGCAGACGGAGGGAAAT
GGCCGAGAGACCAATAATGAGACGCTGGGAGCCGTGCTGGGACTAGAAAT
GCTGCAGGCCCTTCAAAAAGCGTCTCGAAGGCAGGGAGGCGGATTCGCGG
ACGAGCCGCGGCGGATGTCGTCGATGAGGAGCTGCTGCTTGTCCTAG
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Synonyms
Publications