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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr19 | genome | chr19:515490..518387 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G01710.1 vs.
Match: EWM23700.1 (cysteinyl-trna synthetase [Nannochloropsis gaditana]) HSP 1 Score: 550.8 bits (1418), Expect = 6.600e-153 Identity = 330/629 (52.46%), Postives = 403/629 (64.07%), Query Frame = 0
Query: 46 SSSLTRLLLDREAASTPNQGVAWKWYACGPTVYDSAHLGHARTYVCQDIIRRVLTNYFGQDVMFAMGVTDVDDKILRRAAEIKEDPWALARRYEAEFWRDMRALNVLEPTAVVRVTEHIDAIIAYVQRIQKNGFAYETSSGVYFDVAAFVKKGFTYRKLRQIEGVQGAGEEIPASAAGGGVRGGEGAVVGREEKRGRRDFALWKRSKAGEEEDMCWDSPWGHGRPGWHIECSAMTHHLLRDRLEIHSGGIDLCFPHHTNEIAQCEAFGYKAEEREGTVEEDGKLGKGCCPSSYAAAPTTAGEEWVKAWLHTGHLYIQGLKMSKSLKNFITVQECLKRHHADDFRIFCLQRRYGANVNYSESAMREAQNLRRQFCNFVSLAISTQHGSSSSSSSSSSSSSSSSSIRSKSKRWGPKEVAVMTELERVKRSVGKALLEGGIDTPEVLRLLQGLVATGHMYMREGREGGSEAGCVE---EVLRNVAGYVIYILRLFGVQSIDDAMQSFSSSSPLSSSSMATTAATTEALSRAVVDFRACVRAAALEDREEHGCFRETGATGGEKPKSSSSTELARRLLRLCDDFRDGELARLGLQVKDLGVGKCHWALGAPPPPPPSPSPPPSNLPPSPLAAA 672
SS L LL +++A P+ A KWYACGPTVYDSAHLGHARTYV QD+IRRVLT++ GQDV+F MG+TDVDDKIL+RA E KEDP ALARRYEA+F DMRALNVLEP+A+VRVTEHI II Y+++I NG AYETSSGVYFDV AF KK F Y KL+ + V+ A E P G VVG +EK+ RDF LWK +K GE M WDSPWG GRPGWHIECSAMT HLL L+IHSGG+DLCFPHHTNEIAQ +AF + ED WV AWLHTGHLYI+GLKMSKSLKNFI+V+E L H ADDFR+FCLQRR+ A+V+YSESA+ EA++LR+ F NFVSLA H S R KRWG KE +M EL RVK V KA ++GG+DTP+VLRLL+ LV GH Y+R+G E E EV+ N+A YV +L L G ++ F+ + L S+ + A E+L++++VDFRA VRAAALE R R + K ++ LA+RLL LCD+FR+ +L LG+QVKD GVG+C W L +P P + ++P L A+
Sbjct: 43 SSPLIPLL--KKSAERPSLE-ALKWYACGPTVYDSAHLGHARTYVSQDVIRRVLTDFLGQDVIFVMGITDVDDKILQRAMERKEDPRALARRYEADFLADMRALNVLEPSALVRVTEHIRDIIDYIKQIDTNGMAYETSSGVYFDVRAFSKK-FAYGKLKTKDRVRSANAEAPVGREEGQQERIGVDVVGMDEKKDLRDFVLWKFNKPGEAA-MSWDSPWGRGRPGWHIECSAMTQHLLGPHLDIHSGGVDLCFPHHTNEIAQSDAF---------RMSED--------------------PAWVGAWLHTGHLYIKGLKMSKSLKNFISVREFLAGHDADDFRMFCLQRRFDADVDYSESALLEARSLRQVFINFVSLAQQRVHVLS----------------RDGCKRWGAKEFEIMAELARVKVGVRKAFVQGGLDTPQVLRLLRDLVGLGHEYLRQGDGKAEERDGTEARGEVVSNLAAYVAKLLALLG-------LRCFNQFTLLHRGSL--SGADVESLAKSLVDFRARVRAAALEGRR-----RRPRDGSDVEEKEGTTAALAQRLLVLCDEFRERDLIELGIQVKDTGVGECSWTLASPSSAPCEAADQKLDVPGVTLLAS 607
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G01710.1 ID=NO19G01710.1|Name=NO19G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2575bp TCTCCGTCCCTGGGTGATGACTGTCGCGGCGGGATGTATGTAGAGAATAC GTGTGGGCTTGTGCGCACACAAAGAATTTTGAAGTATCAAAAAACGGCCC GCATATCATCATCGTGCGACCCTCGGTGAGACCTCCTCCCTCTCTCCCTC CCATCCCTGTTACACGCGCACAACGCTCCATATGACACACACATACGCAC AGATACAAGAAGTATCATGACAACAGCAAGTACGAGGATCGCAACCTGTC AATAGTGCCCACTATCTCATAATGTGGGGCAAACAGCGTGTAGGGTTCGC CTCGCGGCGGCTTTTGCTCGGGGTCAGGGGGGGCTGCCATGCTCAAGGCT CCTCCGGTTGGGTCATCGCATACCGCCGCCACGGCACATCCATCTCTTCC TCGGTTTCCTCGTCCCTGACACGCCTGTTGTTGGATCGAGAGGCGGCATC CACCCCCAATCAAGGGGTGGCATGGAAGTGGTATGCATGCGGCCCGACCG TGTACGATTCGGCCCACCTAGGCCATGCGCGAACCTACGTCTGCCAAGAC ATTATTCGCCGGGTACTTACAAATTATTTCGGCCAAGACGTGATGTTTGC TATGGGCGTCACGGACGTGGACGACAAGATCCTCCGGCGGGCTGCGGAAA TCAAAGAAGATCCCTGGGCTCTAGCCCGTCGATATGAAGCCGAATTTTGG AGGGACATGCGGGCACTGAACGTGCTGGAACCCACGGCCGTGGTGCGCGT CACGGAGCACATTGACGCCATAATTGCTTATGTTCAGCGGATCCAAAAGA ATGGATTTGCGTACGAGACGAGCAGCGGGGTTTATTTTGATGTGGCGGCT TTTGTAAAGAAGGGTTTCACATACAGAAAGCTGAGGCAGATAGAGGGAGT GCAGGGGGCGGGGGAGGAGATACCGGCATCAGCAGCGGGAGGAGGAGTAA GAGGAGGAGAAGGAGCTGTAGTGGGCCGGGAGGAAAAGAGGGGTAGGCGT GATTTTGCACTGTGGAAACGAAGTAAGGCAGGCGAGGAAGAAGACATGTG TTGGGATTCTCCGTGGGGTCATGGGCGGCCAGGCTGGCACATTGAATGCT CGGCGATGACTCACCATTTGCTACGGGATCGGCTGGAGATCCACTCCGGC GGCATTGATTTGTGTTTTCCCCATCATACGAATGAGATTGCACAGTGTGA GGCTTTTGGATACAAAGCGGAGGAAAGAGAAGGGACAGTGGAAGAGGATG GGAAGCTCGGCAAGGGATGTTGTCCATCTTCTTATGCTGCTGCTCCCACC ACTGCTGGGGAGGAGTGGGTGAAGGCGTGGCTACACACCGGACATCTGTA TATCCAGGGTTTGAAGATGAGTAAGAGCCTAAAAAACTTCATCACGGTGC AGGAGTGCTTGAAGAGGCATCATGCGGATGATTTTAGGATTTTTTGTTTG CAGCGCCGGTATGGGGCGAATGTGAATTACAGCGAAAGCGCCATGCGAGA AGCCCAAAATCTCCGCCGGCAGTTCTGCAACTTTGTTTCCCTCGCCATTT CAACACAACATGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAGCAGCAGCATAAGGAGCAAAAGTAAGCGATGGGGCCCGAAAGA AGTAGCGGTGATGACTGAGCTGGAGCGAGTGAAGAGGAGCGTTGGAAAGG CGCTGCTGGAGGGGGGGATTGACACACCTGAGGTCCTACGGTTACTCCAG GGGCTGGTGGCGACCGGCCACATGTATATGCGAGAAGGGAGGGAGGGAGG GAGTGAAGCAGGATGCGTGGAGGAGGTACTGAGGAATGTGGCAGGGTACG TGATCTATATTTTGAGACTATTTGGTGTGCAGAGCATTGATGATGCTATG CAGTCCTTCTCTTCGTCGTCCCCTCTGTCATCTTCGTCCATGGCCACTAC AGCTGCCACCACAGAGGCTCTTTCTAGGGCTGTGGTGGACTTCCGGGCTT GTGTGCGCGCTGCTGCCTTGGAGGACCGGGAAGAACATGGGTGTTTTAGA GAAACTGGCGCGACGGGAGGGGAGAAGCCGAAGAGTAGCAGTAGTACAGA GCTTGCGCGTAGGTTGTTGCGTTTGTGCGATGATTTCCGAGATGGTGAGT TGGCTCGCTTGGGTCTGCAGGTGAAAGACCTTGGGGTGGGAAAATGTCAC TGGGCTCTGGGAGCCCCTCCTCCTCCTCCTCCCTCTCCTTCTCCACCTCC TTCCAATCTTCCTCCTTCTCCACTTGCCGCTGCTGCTGCTGCTTCGGCGT CTGCTACTGCCTCTATGGCTGCGCCACGTGTCGGCAGGCAGCACAAGAGG CCTAGAGCTAGTGTTGCCCTTTCGGAGCTTTTCAAGCAGGGCCCATATGA AGGCAAGTTCACATCGTTTGATGAGTTGGAGATTCCCACAGCAGACGCAA AAGGGCGTCCTCTCAGCAAGAATTTGCGCGCGAAACTCGAGAAGCAGCAT GCGCGGCATGTGGCTCTCCTTGCGGAGGTTAAGCAGAAGGATGACGGGAA TGGCGGTGGAAAAGGAAGAGATTGA back to topprotein sequence of NO19G01710.1 >NO19G01710.1-protein ID=NO19G01710.1-protein|Name=NO19G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=768bp MWGKQRVGFASRRLLLGVRGGCHAQGSSGWVIAYRRHGTSISSSVSSSLT RLLLDREAASTPNQGVAWKWYACGPTVYDSAHLGHARTYVCQDIIRRVLT NYFGQDVMFAMGVTDVDDKILRRAAEIKEDPWALARRYEAEFWRDMRALN VLEPTAVVRVTEHIDAIIAYVQRIQKNGFAYETSSGVYFDVAAFVKKGFT YRKLRQIEGVQGAGEEIPASAAGGGVRGGEGAVVGREEKRGRRDFALWKR SKAGEEEDMCWDSPWGHGRPGWHIECSAMTHHLLRDRLEIHSGGIDLCFP HHTNEIAQCEAFGYKAEEREGTVEEDGKLGKGCCPSSYAAAPTTAGEEWV KAWLHTGHLYIQGLKMSKSLKNFITVQECLKRHHADDFRIFCLQRRYGAN VNYSESAMREAQNLRRQFCNFVSLAISTQHGSSSSSSSSSSSSSSSSSIR SKSKRWGPKEVAVMTELERVKRSVGKALLEGGIDTPEVLRLLQGLVATGH MYMREGREGGSEAGCVEEVLRNVAGYVIYILRLFGVQSIDDAMQSFSSSS PLSSSSMATTAATTEALSRAVVDFRACVRAAALEDREEHGCFRETGATGG EKPKSSSSTELARRLLRLCDDFRDGELARLGLQVKDLGVGKCHWALGAPP PPPPSPSPPPSNLPPSPLAAAAAASASATASMAAPRVGRQHKRPRASVAL SELFKQGPYEGKFTSFDELEIPTADAKGRPLSKNLRAKLEKQHARHVALL AEVKQKDDGNGGGKGRD* back to topmRNA from alignment at chr19:515490..518387+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G01710.1 ID=NO19G01710.1|Name=NO19G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2898bp|location=Sequence derived from alignment at chr19:515490..518387+ (Nannochloropsis oceanica) TCTCCGTCCCTGGGTGATGACTGTCGCGGCGGGATGTATGTAGAGAATAC
GTGTGGGCTTGTGCGCACACAAAGAATTTTGAAGTATCAAAAAACGGCCC
GCATATCATCATCGTGCGACCCTCGGTGAGACCTCCTCCCTCTCTCCCTC
CCATCCCTGTTACACGCGCACAACGCTCCATATGACACACACATACGCAC
AGATACAAGAAGTATCATGACAACAGCAAGTACGAGGATCGCAACCTGTC
AATAGTGCCCACTATCTCATAATGTGGGGCAAACAGCGTGTAGGGTTCGC
CTCGCGGCGGCTTTTGCTCGGGGTCAGGGGGGGCTGCCATGCTCAAGGCT
CCTCCGGTTGGGTCATCGCATACCGCCGCCACGGCACATCCATCTCTTCC
TCGGTTTCCTCGTCCCTGACACGCCTGTTGTTGGATCGAGAGGCGGCATC
CACCCCCAATCAAGGGGTGGCATGGAAGTGGTATGCATGCGGCCCGACCG
TGTACGATTCGGCCCACCTAGGCCATGCGCGAACCTACGTCTGCCAAGAC
ATTATTCGCCGGGTACTTACAAATTATTTCGGCCAAGACGTGATGTTTGC
TATGGGCGTCACGGACGTGGACGACAAGATCCTCCGGCGGGCTGCGGAAA
TGTACGCTTCTTTCTCTTTTCCAACACCATGCCAAGTTGTCCTCCCCTTA
CGTTTACCTCTCACCATCCCCCCAAAACCTCATAAACGTAGCAAAGAAGA
TCCCTGGGCTCTAGCCCGTCGATATGAAGCCGAATTTTGGAGGGACATGC
GGGCACTGAACGTGCTGGAACCCACGGCCGTGGTGCGCGTCACGGAGCAC
ATTGACGCCATAATTGCTTATGTTCAGCGGATCCAAAAGAATGGATTTGC
GTACGAGACGAGCAGCGGGGTTTATTTTGATGTGGCGGCTTTTGTAAAGA
AGGGTTTCACATACAGAAAGCTGAGGCAGATAGAGGGAGTGCAGGGGGCG
GGGGAGGAGATACCGGCATCAGCAGCGGGAGGAGGAGTAAGAGGAGGAGA
AGGAGCTGTAGTGGGCCGGGAGGAAAAGAGGGGTAGGCGTGATTTTGCAC
TGTGGTAGGTAGAGGCGGGAAGGGAGAAGCTTTTGATTTTCGGTCGCTTG
GACCTGCACACCTCAATACACGTCTTCATCCCCTCCCTCACCCCTATTCC
TCCCTTCTTCTTAACAGGAAACGAAGTAAGGCAGGCGAGGAAGAAGACAT
GTGTTGGGATTCTCCGTGGGGTCATGGGCGGCCAGGCTGGCACATTGAAT
GCTCGGCGATGACTCACCATTTGCTACGGGATCGGCTGGAGATCCACTCC
GGCGGCATTGATTTGTGTTTTCCCCATCATACGAATGAGATTGCACAGTG
TGAGGCTTTTGGATACAAAGCGGAGGAAAGAGAAGGGACAGTGGAAGAGG
ATGGGAAGCTCGGCAAGGGATGTTGTCCATCTTCTTATGCTGCTGCTCCC
ACCACTGCTGGGGAGGAGTGGGTGAAGGCGTGGCTACACACCGGACATCT
GTATATCCAGGGTTTGAAGATGAGTAAGAGCCTAAAAAACTTCATCACGG
TGCAGGAGTGCTTGAAGAGGCATCATGCGGATGATTTTAGGATTTTTTGT
TTGCAGCGCCGGTATGGGGCGAATGTGAATTACAGGTGCGTAGGAGGACA
CTCGAGGATGAGAAAGAGGGATAGGGGAATCATAGGGGAACCGGACCCTA
CTACCCGAACTCGCACATACACCTTCCTTGTTCTCGCTCTCCCCGAATCA
CACAGCGAAAGCGCCATGCGAGAAGCCCAAAATCTCCGCCGGCAGTTCTG
CAACTTTGTTTCCCTCGCCATTTCAACACAACATGGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATAAGGAGCAAA
AGTAAGCGATGGGGCCCGAAAGAAGTAGCGGTGATGACTGAGCTGGAGCG
AGTGAAGAGGAGCGTTGGAAAGGCGCTGCTGGAGGGGGGGATTGACACAC
CTGAGGTCCTACGGTTACTCCAGGGGCTGGTGGCGACCGGCCACATGTAT
ATGCGAGAAGGGAGGGAGGGAGGGAGTGAAGCAGGATGCGTGGAGGAGGT
ACTGAGGAATGTGGCAGGGTACGTGATCTATATTTTGAGACTATTTGGTG
TGCAGAGCATTGATGATGCTATGCAGTCCTTCTCTTCGTCGTCCCCTCTG
TCATCTTCGTCCATGGCCACTACAGCTGCCACCACAGAGGCTCTTTCTAG
GGCTGTGGTGGACTTCCGGGCTTGTGTGCGCGCTGCTGCCTTGGAGGACC
GGGAAGAACATGGGTGTTTTAGAGAAACTGGCGCGACGGGAGGGGAGAAG
CCGAAGAGTAGCAGTAGTACAGAGCTTGCGCGTAGGTTGTTGCGTTTGTG
CGATGATTTCCGAGATGGTGAGTTGGCTCGCTTGGGTCTGCAGGTGAAAG
ACCTTGGGGTGGGAAAATGTCACTGGGCTCTGGGAGCCCCTCCTCCTCCT
CCTCCCTCTCCTTCTCCACCTCCTTCCAATCTTCCTCCTTCTCCACTTGC
CGCTGCTGCTGCTGCTTCGGCGTCTGCTACTGCCTCTATGGCTGCGCCAC
GTGTCGGCAGGCAGCACAAGAGGCCTAGAGCTAGTGTTGCCCTTTCGGAG
CTTTTCAAGCAGGGCCCATATGAAGGCAAGTTCACATCGTTTGATGAGTT
GGAGATTCCCACAGCAGACGCAAAAGGGCGTCCTCTCAGCAAGAATTTGC
GCGCGAAACTCGAGAAGCAGCATGCGCGGCATGTGGCTCTCCTTGCGGAG
GTTAAGCAGAAGGATGACGGGAATGGCGGTGGAAAAGGAAGAGATTGA back to topCoding sequence (CDS) from alignment at chr19:515490..518387+ >NO19G01710.1 ID=NO19G01710.1|Name=NO19G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=2304bp|location=Sequence derived from alignment at chr19:515490..518387+ (Nannochloropsis oceanica) ATGTGGGGCAAACAGCGTGTAGGGTTCGCCTCGCGGCGGCTTTTGCTCGG GGTCAGGGGGGGCTGCCATGCTCAAGGCTCCTCCGGTTGGGTCATCGCAT ACCGCCGCCACGGCACATCCATCTCTTCCTCGGTTTCCTCGTCCCTGACA CGCCTGTTGTTGGATCGAGAGGCGGCATCCACCCCCAATCAAGGGGTGGC ATGGAAGTGGTATGCATGCGGCCCGACCGTGTACGATTCGGCCCACCTAG GCCATGCGCGAACCTACGTCTGCCAAGACATTATTCGCCGGGTACTTACA AATTATTTCGGCCAAGACGTGATGTTTGCTATGGGCGTCACGGACGTGGA CGACAAGATCCTCCGGCGGGCTGCGGAAATCAAAGAAGATCCCTGGGCTC TAGCCCGTCGATATGAAGCCGAATTTTGGAGGGACATGCGGGCACTGAAC GTGCTGGAACCCACGGCCGTGGTGCGCGTCACGGAGCACATTGACGCCAT AATTGCTTATGTTCAGCGGATCCAAAAGAATGGATTTGCGTACGAGACGA GCAGCGGGGTTTATTTTGATGTGGCGGCTTTTGTAAAGAAGGGTTTCACA TACAGAAAGCTGAGGCAGATAGAGGGAGTGCAGGGGGCGGGGGAGGAGAT ACCGGCATCAGCAGCGGGAGGAGGAGTAAGAGGAGGAGAAGGAGCTGTAG TGGGCCGGGAGGAAAAGAGGGGTAGGCGTGATTTTGCACTGTGGAAACGA AGTAAGGCAGGCGAGGAAGAAGACATGTGTTGGGATTCTCCGTGGGGTCA TGGGCGGCCAGGCTGGCACATTGAATGCTCGGCGATGACTCACCATTTGC TACGGGATCGGCTGGAGATCCACTCCGGCGGCATTGATTTGTGTTTTCCC CATCATACGAATGAGATTGCACAGTGTGAGGCTTTTGGATACAAAGCGGA GGAAAGAGAAGGGACAGTGGAAGAGGATGGGAAGCTCGGCAAGGGATGTT GTCCATCTTCTTATGCTGCTGCTCCCACCACTGCTGGGGAGGAGTGGGTG AAGGCGTGGCTACACACCGGACATCTGTATATCCAGGGTTTGAAGATGAG TAAGAGCCTAAAAAACTTCATCACGGTGCAGGAGTGCTTGAAGAGGCATC ATGCGGATGATTTTAGGATTTTTTGTTTGCAGCGCCGGTATGGGGCGAAT GTGAATTACAGCGAAAGCGCCATGCGAGAAGCCCAAAATCTCCGCCGGCA GTTCTGCAACTTTGTTTCCCTCGCCATTTCAACACAACATGGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATAAGG AGCAAAAGTAAGCGATGGGGCCCGAAAGAAGTAGCGGTGATGACTGAGCT GGAGCGAGTGAAGAGGAGCGTTGGAAAGGCGCTGCTGGAGGGGGGGATTG ACACACCTGAGGTCCTACGGTTACTCCAGGGGCTGGTGGCGACCGGCCAC ATGTATATGCGAGAAGGGAGGGAGGGAGGGAGTGAAGCAGGATGCGTGGA GGAGGTACTGAGGAATGTGGCAGGGTACGTGATCTATATTTTGAGACTAT TTGGTGTGCAGAGCATTGATGATGCTATGCAGTCCTTCTCTTCGTCGTCC CCTCTGTCATCTTCGTCCATGGCCACTACAGCTGCCACCACAGAGGCTCT TTCTAGGGCTGTGGTGGACTTCCGGGCTTGTGTGCGCGCTGCTGCCTTGG AGGACCGGGAAGAACATGGGTGTTTTAGAGAAACTGGCGCGACGGGAGGG GAGAAGCCGAAGAGTAGCAGTAGTACAGAGCTTGCGCGTAGGTTGTTGCG TTTGTGCGATGATTTCCGAGATGGTGAGTTGGCTCGCTTGGGTCTGCAGG TGAAAGACCTTGGGGTGGGAAAATGTCACTGGGCTCTGGGAGCCCCTCCT CCTCCTCCTCCCTCTCCTTCTCCACCTCCTTCCAATCTTCCTCCTTCTCC ACTTGCCGCTGCTGCTGCTGCTTCGGCGTCTGCTACTGCCTCTATGGCTG CGCCACGTGTCGGCAGGCAGCACAAGAGGCCTAGAGCTAGTGTTGCCCTT TCGGAGCTTTTCAAGCAGGGCCCATATGAAGGCAAGTTCACATCGTTTGA TGAGTTGGAGATTCCCACAGCAGACGCAAAAGGGCGTCCTCTCAGCAAGA ATTTGCGCGCGAAACTCGAGAAGCAGCATGCGCGGCATGTGGCTCTCCTT GCGGAGGTTAAGCAGAAGGATGACGGGAATGGCGGTGGAAAAGGAAGAGA TTGA back to top
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