NO19G01590.1, NO19G01590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G01590.1
Unique NameNO19G01590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1634
Alignment locationchr19:477338..479880 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:477338..479880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G01590.1 vs.
Match: EWM23702.1 (developmentally regulated gtp binding protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 607.8 bits (1566), Expect = 2.200e-170
Identity = 300/310 (96.77%), Postives = 308/310 (99.35%), Query Frame = 0 
Query:    1 MSTIQKIAELEAEYAKTQKNKATNYHLGLIKAKLAKLRRELIEPTGGGGGKGGDGFDVAKSGDTRVGLVGFPSVGKSTLLTKLTGTFSEAASYEFTTLTAIPGTLHYRGARIQIVDLPGIIEGAKDGKGRGRQVISAARTCNIILVVLDVAKPATHKILIERELDGFGIRLNQEPPRIMFRKKDKGGINYQAFVPQTSLDAEAVTAICREYKIHNADVHLRCDATVDQIIDVVEGNRKYMPAVYVLNKIDQISVEELDIISRLPHCVPISASHGWNLDELIDQVWDECKMIRIYTKPKGQIPDYTAPVIL 311
            MST+QKIAELEAEYAKTQKNKATNYHLGLIKAKLAKLRRELIEP+GGGGGKGG+GFDVAKSGDTRVGLVGFPSVGKSTLLTKLTGTFSEAASYEFTTLTAIPGTLHYRGARIQ+VDLPGIIEGAKDGKGRGRQVISAARTCNIILVVLDVAKPATHKILIERELDGFGIRLNQEPPRIMFRKKDKGGIN+QAFVPQT+LDAEAVTAICREYKIHNADVHLRCDATVDQIIDVVEGNRKYMPAVYVLNKIDQIS+EELDIISRLPHCVPISA HGWNLDELID+VWDECKMIRIYTKPKGQIPDYTAPV L
Sbjct:    1 MSTLQKIAELEAEYAKTQKNKATNYHLGLIKAKLAKLRRELIEPSGGGGGKGGEGFDVAKSGDTRVGLVGFPSVGKSTLLTKLTGTFSEAASYEFTTLTAIPGTLHYRGARIQVVDLPGIIEGAKDGKGRGRQVISAARTCNIILVVLDVAKPATHKILIERELDGFGIRLNQEPPRIMFRKKDKGGINFQAFVPQTTLDAEAVTAICREYKIHNADVHLRCDATVDQIIDVVEGNRKYMPAVYVLNKIDQISIEELDIISRLPHCVPISAQHGWNLDELIDKVWDECKMIRIYTKPKGQIPDYTAPVSL 310
The following BLAST results are available for this feature:
BLAST of NO19G01590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23702.12.200e-17096.77developmentally regulated gtp binding protein 1 [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G01590NO19G01590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G01590.1NO19G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G01590.1.cds1NO19G01590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01590.1.cds2NO19G01590.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01590.1.cds3NO19G01590.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01590.1.cds4NO19G01590.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G01590.1.cds5NO19G01590.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G01590.1 ID=NO19G01590.1|Name=NO19G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1634bp
CAACAGGGTCCGACCATTGACTCTCAAGCAGACGGGCAAGCCAGCATCAT
AATCTGCTCCTCCACATCGTAGAAGCCAGCTACCACTTCATTAACTGCAG
CACCAGCCCAATCACAACATGTCGACGATCCAAAAAATCGCCGAGTTGGA
AGCCGAGTACGCCAAGACCCAAAAGAACAAGGCGACCAACTATCATCTCG
GCCTTATCAAAGCCAAGCTTGCCAAGCTCCGTCGTGAGCTGATTGAACCC
ACCGGCGGCGGTGGAGGGAAAGGAGGGGATGGCTTCGACGTGGCCAAGTC
AGGCGACACCCGTGTGGGTCTGGTGGGCTTTCCATCAGTAGGGAAATCGA
CCCTGTTGACGAAGCTCACGGGCACATTTTCCGAGGCGGCCTCTTATGAG
TTTACTACTTTGACGGCAATTCCAGGCACGCTGCATTACCGGGGGGCGAG
GATCCAGATTGTGGATCTACCGGGGATTATCGAGGGAGCGAAGGACGGCA
AAGGCCGTGGTCGTCAAGTCATTTCCGCAGCGCGTACATGCAACATTATT
CTCGTCGTCCTCGACGTGGCTAAGCCCGCCACCCATAAAATCTTGATCGA
ACGTGAGCTGGATGGATTTGGCATTCGCCTGAACCAGGAGCCTCCGCGCA
TCATGTTCCGGAAGAAGGACAAGGGCGGAATTAATTATCAAGCCTTTGTG
CCTCAGACGTCTCTCGACGCCGAGGCGGTGACGGCGATTTGCCGGGAGTA
CAAGATTCACAATGCGGATGTGCACTTGCGGTGTGACGCCACGGTGGACC
AGATAATTGACGTGGTTGAGGGCAATAGGAAGTACATGCCCGCCGTGTAC
GTGCTTAACAAAATTGACCAAATCTCGGTGGAGGAGCTGGACATCATCAG
CCGCCTCCCCCACTGTGTCCCCATCTCCGCTTCGCATGGATGGAACCTCG
ATGAGCTCATCGACCAAGTCTGGGATGAGTGTAAGATGATCCGGATCTAC
ACCAAGCCCAAAGGCCAAATCCCTGACTACACCGCACCGGTAATTCTCCA
TTCCCACCATCCCTCCGTCGAGGATTTCTGCAACCGCATCCATCGCACAT
TGATAAGTTCTTTTAAGTATGCCTGGGTTTGGGGCTCGAGCGTGAAGCAC
CAACCGCAAAGGGTGGGGAAAGATCATATTCTTGCCGATGAGGATGTTGT
GCAAATCGTGAAAAAGAGTGGATAGAAGGAGAAATAGACGGAGAGAGACA
GAGACAAACAGAAAGAGCCATAGAGAAAGACAGAGAGAACTAGATACAGA
GAGTGAGAGGGGGGAAGACAGGGAGAGGGAGGAGAGAGAGGCGAGGGAGA
GTATGAGAGAGGCGACAATATTTTCGACTACGGAAAAAGATGGTCACTCT
ATTGCCTGAGGACAGCTACAACAGCAGTAGTAGCAGAGGCAGCAGCAGCA
GGAGCCTCCTGCATCATTGAAGCGCTCATGTGCAGGAAGGACAAGAGAAA
GGAGGGGAAAATCGCAGCGAACGACGAGGCGGGGAAAGGGCATAGGGACG
AGGGATGAAGAGGGGTGAAGGAATAAGGGATGACGGAAGGGAAGAGACTT
AAGAAAGAAGAAGTAGGACTTGTAATTGTACCCC
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protein sequence of NO19G01590.1

>NO19G01590.1-protein ID=NO19G01590.1-protein|Name=NO19G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MSTIQKIAELEAEYAKTQKNKATNYHLGLIKAKLAKLRRELIEPTGGGGG
KGGDGFDVAKSGDTRVGLVGFPSVGKSTLLTKLTGTFSEAASYEFTTLTA
IPGTLHYRGARIQIVDLPGIIEGAKDGKGRGRQVISAARTCNIILVVLDV
AKPATHKILIERELDGFGIRLNQEPPRIMFRKKDKGGINYQAFVPQTSLD
AEAVTAICREYKIHNADVHLRCDATVDQIIDVVEGNRKYMPAVYVLNKID
QISVEELDIISRLPHCVPISASHGWNLDELIDQVWDECKMIRIYTKPKGQ
IPDYTAPVILHSHHPSVEDFCNRIHRTLISSFKYAWVWGSSVKHQPQRVG
KDHILADEDVVQIVKKSG*
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mRNA from alignment at chr19:477338..479880-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G01590.1 ID=NO19G01590.1|Name=NO19G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2543bp|location=Sequence derived from alignment at chr19:477338..479880- (Nannochloropsis oceanica)
CAACAGGGTCCGACCATTGACTCTCAAGCAGACGGGCAAGCCAGCATCAT
AATCTGCTCCTCCACATCGTAGAAGCCAGCTACCACTTCATTAACTGCAG
CACCAGCCCAATCACAACATGTCGACGATCCAAGTAAGTTTAGGGAGAAC
TAAATCTGTCGTTTCTAGTACTTTGTTTTTCACAGCGCCATGCCCGTTTC
CTTGGTTTTCACCCTCGCCCCATGTAGAAGGGAACCTCCCTCCCTCTTTT
TTTCCCCGTAGCCCCCCTCTGCAACAACTTCTGCCTGCCAAGCACGAAGA
GTTTTTGTTCTTTCTTTCTGTTCTTTCAAGAGCCTTCCTGTTCCAGCACT
GCTTCTCTCCGTATCTCCCCCTTGACCATTTCTCCCATCCTCACATCCCC
TCCCGACAGAAAATCGCCGAGTTGGAAGCCGAGTACGCCAAGACCCAAAA
GAACAAGGCGACCAACTATCATCTCGGCCTTATCAAAGCCAAGCTTGCCA
AGCTCCGTCGTGAGCTGATTGAACCCACCGGCGGCGGTGGAGGGAAAGGA
GGGGATGGCTTCGACGTGGCCAAGTCAGGCGACACCCGTGTGGGTCTGGT
GGGCTTTCCATCAGTAGGGAAATCGACCCTGTTGACGAAGCTCACGGGCA
CATTTTCCGAGGCGGCCTCTTATGAGTTTACTACTTTGACGGCAATTCCA
GGCACGCTGCATTACCGGGGGGCGAGGATCCAGATTGTGGATCTACCGGG
GATTATCGAGGGAGCGAAGGACGGCAAAGGCAAGTTCATCTTCCCTCCTT
CCCTCCTCCTCTCCCCCTCTCCCCTGAGTCCGCGAAGGAAGAATTCGGGC
TTTGCCTCTTGTTCATCAAATGATTTCTCTAGCGTTTTCATGCATTATAA
TCTTTTTTGTGCTCCCGGCCGGCCACGTCCAAAATCCTCTGCTTTTGCTC
ACCCCTCCCTCCCTCTTGCCCTCCCTCCCTCCCTTCCTCCCTTGCCCCAT
CCTATGATAGGCCGTGGTCGTCAAGTCATTTCCGCAGCGCGTACATGCAA
CATTATTCTCGTCGTCCTCGACGTGGCTAAGCCCGCCACCCATAAAATCT
TGATCGAACGTGAGCTGGATGGATTTGGCATTCGCCTGAACCAGGAGCCT
CCGCGCATCATGTTCCGGAAGAAGGACAAGGGCGGAATTAATTATCAAGC
CTTTGTGCCTCAGACGTCTCTCGACGCCGAGGCGGTGACGGCGATTTGCC
GGGAGTACAAGATTCACAATGCGGATGTGCACTTGCGGTGTGACGCCACG
GTGGACCAGATAATTGACGTGGTTGAGGGCAATAGGAAGGTGGGGAATCT
CGGGGGAGGGAAAGAGGGAGGGAGGGAAAGAGGAAGGGAAGGAAGGAGGG
AGGGAAAGAGGGAGGGAAGGAGGGATGAAAGGATTAGAAGCTGAGCTTTT
ATTTTACTGCTTTCCTCTTTCATGAAAAAAAAGACTTCATCTTGGTGACC
TTAATCCTCCCTCCCTCTCTCCCTTCCTCCCTTCCTCCCTTCCTCCCTCC
CTCCTTCTCCCACCACGTACAGTACATGCCCGCCGTGTACGTGCTTAACA
AAATTGACCAAATCTCGGTGGAGGAGCTGGACATCATCAGCCGCCTCCCC
CACTGTGTCCCCATCTCCGCTTCGCATGGATGGAACCTCGATGAGCTCAT
CGACCAAGTCTGGGATGAGTGTAAGATGATCCGGATCTACACCAAGCCCA
AAGGCCAAATCCCTGACTACACCGCACCGGTACGCACCTCACCTCCCCCC
CCATCCCTCCTTCTCTCTTTTCTGAACGAATCCGTCGCACGTTGATGAAC
TCTGTGACGTACGTCTGATGGTGCAAGTCCTTTATCCATATGCTCACCCC
TTACCACCTTTCCCTTTCTCCTCCCTCCCCTCCCTTCTCTCCCGCCAGGT
AATTCTCCATTCCCACCATCCCTCCGTCGAGGATTTCTGCAACCGCATCC
ATCGCACATTGATAAGTTCTTTTAAGTATGCCTGGGTTTGGGGCTCGAGC
GTGAAGCACCAACCGCAAAGGGTGGGGAAAGATCATATTCTTGCCGATGA
GGATGTTGTGCAAATCGTGAAAAAGAGTGGATAGAAGGAGAAATAGACGG
AGAGAGACAGAGACAAACAGAAAGAGCCATAGAGAAAGACAGAGAGAACT
AGATACAGAGAGTGAGAGGGGGGAAGACAGGGAGAGGGAGGAGAGAGAGG
CGAGGGAGAGTATGAGAGAGGCGACAATATTTTCGACTACGGAAAAAGAT
GGTCACTCTATTGCCTGAGGACAGCTACAACAGCAGTAGTAGCAGAGGCA
GCAGCAGCAGGAGCCTCCTGCATCATTGAAGCGCTCATGTGCAGGAAGGA
CAAGAGAAAGGAGGGGAAAATCGCAGCGAACGACGAGGCGGGGAAAGGGC
ATAGGGACGAGGGATGAAGAGGGGTGAAGGAATAAGGGATGACGGAAGGG
AAGAGACTTAAGAAAGAAGAAGTAGGACTTGTAATTGTACCCC
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Coding sequence (CDS) from alignment at chr19:477338..479880-

>NO19G01590.1 ID=NO19G01590.1|Name=NO19G01590.1|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at chr19:477338..479880- (Nannochloropsis oceanica)
ATGTCGACGATCCAAAAAATCGCCGAGTTGGAAGCCGAGTACGCCAAGAC
CCAAAAGAACAAGGCGACCAACTATCATCTCGGCCTTATCAAAGCCAAGC
TTGCCAAGCTCCGTCGTGAGCTGATTGAACCCACCGGCGGCGGTGGAGGG
AAAGGAGGGGATGGCTTCGACGTGGCCAAGTCAGGCGACACCCGTGTGGG
TCTGGTGGGCTTTCCATCAGTAGGGAAATCGACCCTGTTGACGAAGCTCA
CGGGCACATTTTCCGAGGCGGCCTCTTATGAGTTTACTACTTTGACGGCA
ATTCCAGGCACGCTGCATTACCGGGGGGCGAGGATCCAGATTGTGGATCT
ACCGGGGATTATCGAGGGAGCGAAGGACGGCAAAGGCCGTGGTCGTCAAG
TCATTTCCGCAGCGCGTACATGCAACATTATTCTCGTCGTCCTCGACGTG
GCTAAGCCCGCCACCCATAAAATCTTGATCGAACGTGAGCTGGATGGATT
TGGCATTCGCCTGAACCAGGAGCCTCCGCGCATCATGTTCCGGAAGAAGG
ACAAGGGCGGAATTAATTATCAAGCCTTTGTGCCTCAGACGTCTCTCGAC
GCCGAGGCGGTGACGGCGATTTGCCGGGAGTACAAGATTCACAATGCGGA
TGTGCACTTGCGGTGTGACGCCACGGTGGACCAGATAATTGACGTGGTTG
AGGGCAATAGGAAGTACATGCCCGCCGTGTACGTGCTTAACAAAATTGAC
CAAATCTCGGTGGAGGAGCTGGACATCATCAGCCGCCTCCCCCACTGTGT
CCCCATCTCCGCTTCGCATGGATGGAACCTCGATGAGCTCATCGACCAAG
TCTGGGATGAGTGTAAGATGATCCGGATCTACACCAAGCCCAAAGGCCAA
ATCCCTGACTACACCGCACCGGTAATTCTCCATTCCCACCATCCCTCCGT
CGAGGATTTCTGCAACCGCATCCATCGCACATTGATAAGTTCTTTTAAGT
ATGCCTGGGTTTGGGGCTCGAGCGTGAAGCACCAACCGCAAAGGGTGGGG
AAAGATCATATTCTTGCCGATGAGGATGTTGTGCAAATCGTGAAAAAGAG
TGGATAG
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Synonyms
Publications